Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
questions
0
votes
2
replies
895
views
how to get sequences by location when pyfaidx.Fasta(read_long_names=True) creates keys from FastaRecord (dmel r6 genome build)?
selene_sdk
pyfaidx
fasta
python
flybase
updated 4 months ago by
Wayne
★ 2.0k • written 4 months ago by
mk
▴ 290
0
votes
0
replies
292
views
use GEOparse to download series supplemental files?
gse
geoparse
python
geoquery
geo
4 months ago by
mk
▴ 290
3
votes
2
replies
492
views
use bioservices.UniProt (python) to map uniprot accession to [multiple] ensembl ids
bioservices
ensembl
python
uniprot
5 months ago by
mk
▴ 290
0
votes
0
replies
307
views
pathwaycommons SPARQL endpoint down?
pathway-commons
updated 10 months ago by
Ram
43k • written 15 months ago by
mk
▴ 290
0
votes
1
reply
575
views
Any way to search [GEO, etc] by library prep protocol (looking for published single-cell multi-ome data)?
single-cell
atac-seq
rna-seq
multiomics
updated 17 months ago by
GenoMax
141k • written 17 months ago by
mk
▴ 290
2
votes
2
replies
598
views
does bioconductor/bioconductor_docker:RELEASE_X_Y install CRAN packages from a fixed snapshot?
R
Bioconductor
docker
2.2 years ago by
mk
▴ 290
1
vote
4
replies
3.2k
views
how to Seurat::RunUMAP() but run reduction="pca" on subset of features?
seurat
pca
umap
2.7 years ago by
mk
▴ 290
1
vote
5
replies
4.8k
views
seurat `<obj>@assays$RNA@counts` vs `<obj>@assays$RNA@data`?
seurat
updated 2.7 years ago by
rpolicastro
13k • written 2.7 years ago by
mk
▴ 290
5
votes
3
replies
1.5k
views
AnnotationHub::mapIds() cannot find existing ENSG (GEO supplemental data cross-referenced with ensembl.org)
ensg
annotationhub
mapping
2.7 years ago by
mk
▴ 290
0
votes
0
replies
875
views
where to get PBMC (68k) labels?
pbmc
single-cell
10x
3.1 years ago by
mk
▴ 290
0
votes
0
replies
678
views
database of ligand->receptor->TF(or transcriptional target)
database
signaling
updated 3.5 years ago by
Biostar
20 • written 3.6 years ago by
mk
▴ 290
0
votes
0
replies
976
views
Published data sets using 10x Feature Barcoding?
10x
single-cell
10x genomics
feature barcoding
3.5 years ago by
mk
▴ 290
8
votes
4
replies
4.0k
views
what is the deal with bioconda?
conda
bioconda
updated 2.9 years ago by
xiaoleiusc
▴ 140 • written 3.5 years ago by
mk
▴ 290
4
votes
6
replies
1.0k
views
content negotiation for the ontobee sparql endpoint
ontobee
sparql
obofoundry
3.6 years ago by
mk
▴ 290
3
votes
2
replies
1.1k
views
error when trying to perform a federated query in Pathway Commons SPARQL endpoint
uniprot
pathway-commons
rdf
sparql
biopax
updated 10 months ago by
Ram
43k • written 3.6 years ago by
mk
▴ 290
3
votes
2
replies
1.1k
views
what is the uniprot RDF entity for "uniprot accession"?
uniprot
rdf
updated 3.6 years ago by
me
▴ 760 • written 3.6 years ago by
mk
▴ 290
1
vote
2
replies
4.0k
views
Creation of cellDataSet in Monocle 2 wants undocumented AnnotatedDataFrame: assayData
monocle
cellDataSet
ExpressionSet
updated 3.6 years ago by
3092605072
• 0 • written 6.3 years ago by
mk
▴ 290
1
vote
1
reply
883
views
Are federated SPARQL queries pointless with the Pathway Commons BioPAX representation?
ontology
BioPAX
SPARQL
wikipathways
reactome
3.6 years ago by
mk
▴ 290
1
vote
2
replies
931
views
censoring time for ICGC records with no followup or date of death?
icgc
survival
cancer
3.8 years ago by
mk
▴ 290
2
votes
4
replies
853
views
ICGC mRNA sequencing data: where is the documentation on analysis_id?
icgc
RNA-Seq
3.9 years ago by
mk
▴ 290
2
votes
3
replies
938
views
Entrez e-utils reference for ensembl ids
ensembl
entrez
e-utils
gene
updated 3.9 years ago by
GenoMax
141k • written 3.9 years ago by
mk
▴ 290
2
votes
4
replies
1.0k
views
How long does a dbGaP controlled data access request take (US extramural)?
TCGA
4.0 years ago by
mk
▴ 290
9
votes
8
replies
1.7k
views
GenomicDataCommons request timeouts cases() %>% ... %>% results_all()
GenomicDataCommons
bioconductor
R
http
updated 4.2 years ago by
Biostar
20 • written 5.3 years ago by
mk
▴ 290
0
votes
0
replies
1.2k
views
scater/scran workflow for batches recompute size factors after MNN?
scater
scran
r
bioconductor
5.0 years ago by
mk
▴ 290
40
votes
6
replies
15k
views
7 follow
Mapping Ensembl Gene IDs with dot suffix
ensembl
gene
biomart
bioconductor
R
updated 9 months ago by
zx8754
11k • written 6.1 years ago by
mk
▴ 290
5
votes
2
replies
1.0k
views
How to submit a genomics package with lots of data to CRAN
CRAN
R
genomics
5.2 years ago by
mk
▴ 290
0
votes
0
replies
910
views
CLRS-type algorithms on sna/network
graph
network
ggnetwork
sna
r
5.4 years ago by
mk
▴ 290
0
votes
0
replies
1.7k
views
specify a root in igraph minimum-spanning-tree
igraph
minimum-spanning-tree
directed-graph
r
updated 5.6 years ago by
Biostar
20 • written 5.6 years ago by
mk
▴ 290
3
votes
1
reply
2.4k
views
How to reproduce MATLAB tsne('algorithm', 'exact') result in R?
tsne
pca
R
Rtsne
matlab
5.7 years ago by
mk
▴ 290
0
votes
1
reply
2.1k
views
kmeans error when running reduceDimension(reduction_method = 'DDRTree')
monocle
irlba
kmeans
ddrtree
updated 6.2 years ago by
Kevin Blighe
87k • written 6.3 years ago by
mk
▴ 290
1
vote
2
replies
1.7k
views
Processor count for cores with Intel hyper-threading in differentialGeneTest()
monocle
RNA-Seq
hpc
hyperthreading
written 6.3 years ago by
mk
▴ 290
0
votes
0
replies
1.0k
views
Given two sets of nucleotide n-mers, how can I learn sets of 'motifs' which are present in one and not the other?
sequencing
TF
DNA-Methylation
6.4 years ago by
mk
▴ 290
5
votes
7
replies
2.6k
views
Linking patient survival to gene-set analysis
GSEA
survival
RNA-Seq
TCGA
updated 6.4 years ago by
Kevin Blighe
87k • written 6.4 years ago by
mk
▴ 290
9
votes
7
replies
5.4k
views
GDC API query to map HT-seq FPKM UUID to a Case UUID
R
RNA-Seq
TCGA
GDC
6.4 years ago by
mk
▴ 290
34 results • Page
1 of 1
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6