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questions
2
votes
1
reply
3.7k
views
Meaning of stat values in DESeq2 result
DESeq2
updated 10 months ago by
Ram
44k • written 17 months ago by
woongjaej
▴ 20
0
votes
0
replies
402
views
WGS trimming end of the reads for specific bp before alignment and call somatic variants
read
trim
WGS
somatic
variant
22 months ago by
woongjaej
▴ 20
1
vote
2
replies
654
views
Curious about way to start scRNA-seq analysis and machine learning using gene expression data
learning
python
cell
single
RNA-seq
R
machine
2.2 years ago by
woongjaej
▴ 20
0
votes
0
replies
404
views
How can I understand aggregate in FAN-C tool using Hi-C data?
Hi-C
TAD
FAN-C
aggregate
fanc
2.2 years ago by
woongjaej
▴ 20
1
vote
1
reply
2.2k
views
How to analysis 4c seq 3c seq data
3c seq
4c seq
alignment
updated 3.4 years ago by
kalavattam
▴ 270 • written 6.4 years ago by
woongjaej
▴ 20
3
votes
5
replies
2.4k
views
What does DESeq2 non symmetric MA plot mean in differential analysis?? (hi-chip)
Hi-ChIP
DESeq2
MA plot
differential analysis
updated 3.6 years ago by
ATpoint
84k • written 3.6 years ago by
woongjaej
▴ 20
1
vote
2
replies
2.4k
views
mapping rate of small rna-seq with different references
smRNA-seq
mapping rate
reference
2.2 years ago by
woongjaej
▴ 20
3
votes
10
replies
5.0k
views
DESeq2 DEG analysis using different sequencing depth data
deseq2
RNA-Seq
sequencing
depth
DEG
updated 5.9 years ago by
h.mon
35k • written 5.9 years ago by
woongjaej
▴ 20
0
votes
0
replies
1.3k
views
qualimap transcript coverage profile truncated in smRNA-seq( ENCODE PIPELINE)
qaulimap2
smRNA-seq
STAR
6.2 years ago by
woongjaej
▴ 20
1
vote
2
replies
1.0k
views
sequencing of control sample in ChIP-seq??
ChIP-Seq
sequencing
updated 6.3 years ago by
Devon Ryan
104k • written 6.3 years ago by
woongjaej
▴ 20
0
votes
6
replies
2.9k
views
Are merged bam files and merge fastq file -> bam files same?
sequencing
bam
merge
updated 6.5 years ago by
Devon Ryan
104k • written 6.5 years ago by
woongjaej
▴ 20
0
votes
2
replies
3.3k
views
Cutadapt using issue
cutadapt
trimming
trim_galore
updated 6.5 years ago by
Biostar
20 • written 6.7 years ago by
woongjaej
▴ 20
0
votes
5
replies
4.1k
views
smRNA-seq adapter trimming cutadapt
cutadapt
smRNA-seq
trimming
Illumina
6.7 years ago by
woongjaej
▴ 20
1
vote
4
replies
4.2k
views
trimming RNA-seq reads with adapter sequence?index? using trimmomatic
RNA-Seq
trimmomatic
adapter
trim
updated 6.7 years ago by
Jake Warner
▴ 840 • written 6.7 years ago by
woongjaej
▴ 20
0
votes
3
replies
3.0k
views
Identify differentially expressed genes in scatter plot
RNA-Seq
scatter plot
DEG
updated 6.8 years ago by
Hussain Ather
▴ 990 • written 6.8 years ago by
woongjaej
▴ 20
1
vote
4
replies
1.6k
views
occupancy at common specific TF binding sites
ChIP-Seq
R
peak
density
bins
updated 6.8 years ago by
Kevin Blighe
88k • written 6.8 years ago by
woongjaej
▴ 20
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