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4
votes
12
replies
10k
views
Extract fasta sequence from gff3 file
sequence
updated 21 months ago by ▴ 10 • written 4.5 years ago by ▴ 10
1
vote
2
replies
987
views
Combine files that have partial filename matches
Sequence
updated 2.6 years ago by 166k • written 2.7 years ago by ▴ 10
0
votes
0
replies
932
views
Comment: Comment: Split file into multiple individual files based on specific attributes
2.7 years ago by genomes_and_MGEs ▴ 10
1
vote
3
replies
932
views
Split file into multiple individual files based on specific attributes
Sequence
2.7 years ago by genomes_and_MGEs ▴ 10
0
votes
1
reply
1.1k
views
Comment: Comment: Parsing genbank or gff files based on specific nucleotide coordinates
2.9 years ago by genomes_and_MGEs ▴ 10
1
vote
3
replies
1.1k
views
Parsing genbank or gff files based on specific nucleotide coordinates
Sequence
updated 2.9 years ago by 22k • written 2.9 years ago by ▴ 10
3
votes
1
reply
637
views
Separate letters in the same column into different rows
sequence
updated 3.2 years ago by 166k • written 3.2 years ago by ▴ 10
3
votes
3
replies
1.8k
views
Extract first and last column of fasta-header
sequence
updated 3.2 years ago by ▴ 400 • written 3.2 years ago by ▴ 10
3
votes
3
replies
1.4k
views
Count values based on condition
sequence
updated 3.3 years ago by 14k • written 3.3 years ago by ▴ 10
2
votes
2
replies
876
views
Add new column with filename
sequence
updated 3.3 years ago by 21k • written 3.3 years ago by ▴ 10
1
vote
2
replies
823
views
Rename filenames based on list
sequence
updated 3.4 years ago by 5.1k • written 3.4 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Comment: Comment: Append assembly accession to nucleotide accession number in RefSeq Genbank file
3.5 years ago by genomes_and_MGEs ▴ 10
0
votes
3
replies
1.2k
views
Append assembly accession to nucleotide accession number in RefSeq Genbank file
sequence
updated 3.4 years ago by 21k • written 3.5 years ago by ▴ 10
0
votes
0
replies
681
views
Comment: Comment: Filter numeric matrix only show large network clusters in Cytoscape
3.5 years ago by genomes_and_MGEs ▴ 10
0
votes
1
reply
681
views
Filter numeric matrix only show large network clusters in Cytoscape
sequence
3.5 years ago by genomes_and_MGEs ▴ 10
0
votes
1
reply
859
views
Comment: Comment: Sequence length of fasta sequences with special characters removed
3.5 years ago by genomes_and_MGEs ▴ 10
3
votes
3
replies
859
views
Sequence length of fasta sequences with special characters removed
sequence
updated 3.5 years ago by 21k • written 3.5 years ago by ▴ 10
3
votes
3
replies
1.9k
views
Count number of basepairs and exclude other characters
sequence
updated 3.9 years ago by 89k • written 3.9 years ago by ▴ 10
1
vote
1
reply
959
views
Split multi-fasta file and keep structure
sequence
updated 4.0 years ago by 21k • written 4.0 years ago by ▴ 10
0
votes
1
reply
2.0k
views
Comment: Comment: Remove whitespaces on fasta files, except on fasta-header
4.1 years ago by genomes_and_MGEs ▴ 10
1
vote
3
replies
2.0k
views
Remove whitespaces on fasta files, except on fasta-header
sequence
updated 4.1 years ago by 21k • written 4.1 years ago by ▴ 10
1
vote
10
replies
2.8k
views
Extract NCBI's refseq assembly accession number from nuccore IDs
sequence
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 10
0
votes
0
replies
2.8k
views
Comment: Comment: Extract NCBI's refseq assembly accession number from nuccore IDs
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 10
0
votes
0
replies
2.8k
views
Comment: Comment: Extract NCBI's refseq assembly accession number from nuccore IDs
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 10
0
votes
1
reply
2.8k
views
Comment: Comment: Extract NCBI's refseq assembly accession number from nuccore IDs
4.3 years ago by genomes_and_MGEs ▴ 10
0
votes
2
replies
2.8k
views
Comment: Comment: Extract NCBI's refseq assembly accession number from nuccore IDs
4.3 years ago by genomes_and_MGEs ▴ 10
0
votes
0
replies
10k
views
Comment: C: Extract fasta sequence from gff3 file
4.5 years ago by genomes_and_MGEs ▴ 10
0
votes
1
reply
10k
views
Comment: C: Extract fasta sequence from gff3 file
4.5 years ago by genomes_and_MGEs ▴ 10
0
votes
1
reply
10k
views
Comment: C: Extract fasta sequence from gff3 file
4.5 years ago by genomes_and_MGEs ▴ 10
1
vote
2
replies
867
views
Filter rows below a given threshold
sequence
updated 4.8 years ago by 36k • written 4.8 years ago by ▴ 10
12
votes
6
replies
2.1k
views
6 follow
Converting to decimal values
sequence
updated 4.8 years ago by 35k • written 4.8 years ago by ▴ 10
1
vote
1
reply
689
views
Convert coverage values to number of occurrence
sequence gene
updated 4.8 years ago by 166k • written 4.8 years ago by ▴ 10
2
votes
2
replies
1.2k
views
Only copy multifasta files from one directory to another
sequence assembly
updated 4.9 years ago by 22k • written 4.9 years ago by ▴ 10
5
votes
2
replies
1.7k
views
Removing text after last underscore on given column
sequence
updated 5.0 years ago by 13k • written 5.0 years ago by ▴ 10
1
vote
2
replies
1.0k
views
Extracting genomic regions based on coordinates in a text file
sequence
updated 5.0 years ago by 166k • written 5.0 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Comment: C: Append fasta header to corresponding fasta filename
updated 5.1 years ago by 45k • written 5.1 years ago by ▴ 10
1
vote
3
replies
1.2k
views
Append fasta header to corresponding fasta filename
sequence
updated 5.1 years ago by 21k • written 5.1 years ago by ▴ 10
2
votes
8
replies
2.9k
views
7 follow
Batch rename protein fasta headers
sequence
updated 5.5 years ago by 22k • written 5.5 years ago by ▴ 10
0
votes
1
reply
2.0k
views
Comment: C: Extract protein files from nucleotide accession numbers
5.5 years ago by genomes_and_MGEs ▴ 10
0
votes
6
replies
2.0k
views
Extract protein files from nucleotide accession numbers
sequence
updated 5.5 years ago by ★ 3.9k • written 5.5 years ago by ▴ 10
0
votes
0
replies
2.9k
views
Comment: C: Batch rename protein fasta headers
5.5 years ago by genomes_and_MGEs ▴ 10
4
votes
2
replies
3.4k
views
Extract fasta sequnces not matching a list
Assembly sequence
updated 5.6 years ago by 153k • written 5.6 years ago by ▴ 10
0
votes
1
reply
901
views
List names in column that match a given word in another column
sequence genome
updated 6.1 years ago by 153k • written 6.1 years ago by ▴ 10
0
votes
0
replies
9.4k
views
Comment: C: Kill nohup bash process
6.3 years ago by genomes_and_MGEs ▴ 10
14
votes
9
replies
9.4k
views
Kill nohup bash process
genome sequence
updated 6.3 years ago by 5.8k • written 6.3 years ago by ▴ 10
0
votes
0
replies
1.3k
views
Comment: C: Download genomes within a given GC content interval
6.3 years ago by genomes_and_MGEs ▴ 10
4
votes
2
replies
1.3k
views
Download genomes within a given GC content interval
Assembly genome sequence
updated 6.3 years ago by 153k • written 6.3 years ago by ▴ 10
5
votes
5
replies
1.8k
views
Remove text flanking .. on fasta-headers
genome sequence
updated 6.5 years ago by 22k • written 6.5 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Comment: C: Remove text flanking .. on fasta-headers
6.5 years ago by genomes_and_MGEs ▴ 10
0
votes
0
replies
6.4k
views
Comment: C: Outputting strain name on prokka annotation
6.5 years ago by genomes_and_MGEs ▴ 10
74 results • Page 1 of 2
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