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5
votes
1
reply
8.9k
views
Answer: Answer: How does samtools markdup works?
updated 5 months ago by 38k • written 3.2 years ago by ▴ 90
0
votes
1
reply
967
views
annotation parameter in ChIPQC
ChIP-Seq ChIPQC
updated 20 months ago by • 0 • written 2.8 years ago by ▴ 90
0
votes
1
reply
666
views
Getting position of features of chromosomes
genome centromere telomere
updated 2.2 years ago by ▴ 40 • written 2.8 years ago by ▴ 90
0
votes
0
replies
667
views
Comment: C: Does read length of RNA seq affects the results ?
2.2 years ago by chaudharyc61 ▴ 90
5
votes
9
replies
667
views
Does read length of RNA seq affects the results ?
RNA-Seq next-gen DESEq2
updated 2.2 years ago by ▴ 540 • written 2.2 years ago by ▴ 90
0
votes
0
replies
389
views
Plotting telomere to centromere data pf a genome
next-gen R ChIP-Seq
2.3 years ago by chaudharyc61 ▴ 90
0
votes
1
reply
454
views
Replicates in Bisulfite data
Bisulfite-Seq Methylation
updated 2.5 years ago by 14k • written 2.5 years ago by ▴ 90
2
votes
6
replies
1.9k
views
Bowtie2 Alignment Error
bowtie2
updated 2.6 years ago by • 0 • written 3.8 years ago by ▴ 90
2
votes
2
replies
562
views
To get correlation of different ChIP-seq samples
ChIP-Seq genome next-gen
updated 2.7 years ago by ▴ 500 • written 2.7 years ago by ▴ 90
0
votes
0
replies
28k
views
Comment: C: Positive Negative Strand
2.8 years ago by chaudharyc61 ▴ 90
0
votes
0
replies
676
views
error in reading bam file in methylKit
methylKit bisulphite
2.9 years ago by chaudharyc61 ▴ 90
0
votes
1
reply
798
views
Comment: C: About Mapping Efficiency of Bisulfite aligners
3.1 years ago by chaudharyc61 ▴ 90
0
votes
1
reply
798
views
Comment: C: About Mapping Efficiency of Bisulfite aligners
3.1 years ago by chaudharyc61 ▴ 90
1
vote
1
reply
501
views
How to smooth methylation data
Bisulfite-seq Analysis
updated 3.1 years ago by 85k • written 3.1 years ago by ▴ 90
0
votes
1
reply
1.0k
views
Extracting Multiple Mapped reads from Bismark output
alignment BS-seq data
updated 3.2 years ago by ▴ 320 • written 3.2 years ago by ▴ 90
0
votes
1
reply
798
views
Comment: C: About Mapping Efficiency of Bisulfite aligners
3.2 years ago by chaudharyc61 ▴ 90
4
votes
7
replies
798
views
About Mapping Efficiency of Bisulfite aligners
BS-seq Methylation
updated 3.2 years ago by 103k • written 3.2 years ago by ▴ 90
3
votes
2
replies
1.3k
views
Plotting CpG methylation
methylation
updated 3.2 years ago by ★ 3.4k • written 3.2 years ago by ▴ 90
1
vote
3
replies
1.1k
views
About Mapping Efficiency of Bisulfite aligners
alignment Bisulfite-sequencing
updated 14 months ago by ▴ 100 • written 3.2 years ago by ▴ 90
0
votes
0
replies
16k
views
Answer: A: What is P value and Padj value in DEGs ?
updated 3.2 years ago by 71k • written 3.2 years ago by ▴ 90
3
votes
3
replies
2.6k
views
Handling replicates in Chip-seq
ChIP-Seq replicates
updated 3.2 years ago by 20 • written 3.7 years ago by ▴ 90
3
votes
3
replies
641
views
Identifying differential methylation regions
methyl-seq
updated 3.3 years ago by 71k • written 3.3 years ago by ▴ 90
0
votes
1
reply
525
views
ChIP-seq Input correlation
ChIP-seq correlation
3.6 years ago by chaudharyc61 ▴ 90
0
votes
0
replies
701
views
Comment: C: Error in peak calling using SPP package
3.7 years ago by chaudharyc61 ▴ 90
0
votes
1
reply
1.5k
views
DiffBind package showing warnings and unable to analyse my data
ChIP-Seq DiffBind
updated 3.7 years ago by ★ 1.7k • written 3.7 years ago by ▴ 90
1
vote
0
replies
1.4k
views
Answer: C: idr command line error
3.7 years ago by chaudharyc61 ▴ 90
3
votes
8
replies
1.4k
views
idr command line error
idr ChIP-Seq
updated 3.7 years ago by 5.7k • written 3.7 years ago by ▴ 90
0
votes
1
reply
1.0k
views
Comment: C: Bedtools Intersect related
3.7 years ago by chaudharyc61 ▴ 90
0
votes
1
reply
1.0k
views
Comment: C: Bedtools Intersect related
3.7 years ago by chaudharyc61 ▴ 90
0
votes
5
replies
1.0k
views
Bedtools Intersect related
ChIP-Seq bed bedtools
updated 10 days ago by 38k • written 3.7 years ago by ▴ 90
0
votes
0
replies
2.5k
views
Comment: C: MACS2 result of FDR
3.7 years ago by chaudharyc61 ▴ 90
2
votes
3
replies
2.5k
views
MACS2 result of FDR
macs2 false discovery rate q-value chip-seq
updated 3.8 years ago by 127k • written 3.8 years ago by ▴ 90
0
votes
1
reply
1.2k
views
Comment: C: Peak calling using spp package
3.8 years ago by chaudharyc61 ▴ 90
1
vote
3
replies
1.2k
views
Peak calling using spp package
ChIP-Seq peak calling spp package
updated 3.8 years ago by 103k • written 3.8 years ago by ▴ 90
0
votes
2
replies
701
views
Error in peak calling using SPP package
ChIP-Seq Peak calling spp
3.8 years ago by chaudharyc61 ▴ 90
0
votes
1
reply
2.0k
views
MACS2 result analysis
ChIP-Seq Tool macs2 peak calling
updated 3.8 years ago by 71k • written 3.8 years ago by ▴ 90
0
votes
1
reply
1.9k
views
Comment: C: Bowtie2 Alignment Error
3.8 years ago by chaudharyc61 ▴ 90
37 results • Page 1 of 1
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