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0
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383
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LDhat analysis pipeline
recombination LDhat
9 months ago by chaudharyc61 ▴ 120
7
votes
1
reply
19k
views
Answer: Answer: How does samtools markdup works?
updated 3.1 years ago by 45k • written 5.8 years ago by ▴ 120
0
votes
1
reply
1.7k
views
annotation parameter in ChIPQC
ChIP-Seq ChIPQC
updated 4.3 years ago by • 0 • written 5.4 years ago by ▴ 120
0
votes
1
reply
1.3k
views
Getting position of features of chromosomes
genome centromere telomere
updated 4.8 years ago by ▴ 60 • written 5.4 years ago by ▴ 120
0
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0
replies
1.9k
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Comment: C: Does read length of RNA seq affects the results ?
4.8 years ago by chaudharyc61 ▴ 120
5
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9
replies
1.9k
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Does read length of RNA seq affects the results ?
RNA-Seq next-gen DESEq2
updated 4.8 years ago by ▴ 590 • written 4.8 years ago by ▴ 120
0
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0
replies
680
views
Plotting telomere to centromere data pf a genome
next-gen R ChIP-Seq
4.9 years ago by chaudharyc61 ▴ 120
0
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1
reply
898
views
Replicates in Bisulfite data
Bisulfite-Seq Methylation
updated 5.1 years ago by 15k • written 5.1 years ago by ▴ 120
2
votes
6
replies
3.2k
views
Bowtie2 Alignment Error
bowtie2
updated 5.2 years ago by • 0 • written 6.5 years ago by ▴ 120
2
votes
2
replies
1.2k
views
To get correlation of different ChIP-seq samples
ChIP-Seq genome next-gen
updated 5.3 years ago by ▴ 540 • written 5.3 years ago by ▴ 120
0
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0
replies
31k
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Comment: C: Positive Negative Strand
5.4 years ago by chaudharyc61 ▴ 120
0
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0
replies
1.1k
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error in reading bam file in methylKit
methylKit bisulphite
5.5 years ago by chaudharyc61 ▴ 120
0
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1
reply
2.3k
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Comment: C: About Mapping Efficiency of Bisulfite aligners
5.7 years ago by chaudharyc61 ▴ 120
0
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1
reply
2.3k
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Comment: C: About Mapping Efficiency of Bisulfite aligners
5.7 years ago by chaudharyc61 ▴ 120
1
vote
1
reply
1.0k
views
How to smooth methylation data
Bisulfite-seq Analysis
updated 5.7 years ago by 89k • written 5.7 years ago by ▴ 120
0
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1
reply
1.8k
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Extracting Multiple Mapped reads from Bismark output
alignment BS-seq data
updated 5.8 years ago by ▴ 330 • written 5.8 years ago by ▴ 120
0
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1
reply
2.3k
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Comment: C: About Mapping Efficiency of Bisulfite aligners
5.8 years ago by chaudharyc61 ▴ 120
4
votes
7
replies
2.3k
views
About Mapping Efficiency of Bisulfite aligners
BS-seq Methylation
updated 5.8 years ago by 105k • written 5.8 years ago by ▴ 120
3
votes
2
replies
2.1k
views
Plotting CpG methylation
methylation
updated 5.8 years ago by ★ 3.4k • written 5.8 years ago by ▴ 120
1
vote
3
replies
1.8k
views
About Mapping Efficiency of Bisulfite aligners
alignment Bisulfite-sequencing
updated 3.8 years ago by ▴ 160 • written 5.8 years ago by ▴ 120
0
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0
replies
47k
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Answer: A: What is P value and Padj value in DEGs ?
updated 5.8 years ago by 90k • written 5.8 years ago by ▴ 120
10
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3
replies
4.8k
views
Handling replicates in Chip-seq
ChIP-Seq replicates
updated 5.8 years ago by 20 • written 6.3 years ago by ▴ 120
3
votes
3
replies
1.1k
views
Identifying differential methylation regions
methyl-seq
updated 5.9 years ago by 90k • written 5.9 years ago by ▴ 120
0
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1
reply
849
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ChIP-seq Input correlation
ChIP-seq correlation
6.3 years ago by chaudharyc61 ▴ 120
0
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0
replies
1.3k
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Comment: C: Error in peak calling using SPP package
6.3 years ago by chaudharyc61 ▴ 120
0
votes
1
reply
2.1k
views
DiffBind package showing warnings and unable to analyse my data
ChIP-Seq DiffBind
updated 6.3 years ago by ★ 2.2k • written 6.3 years ago by ▴ 120
1
vote
0
replies
2.2k
views
Answer: C: idr command line error
6.3 years ago by chaudharyc61 ▴ 120
3
votes
8
replies
2.2k
views
idr command line error
idr ChIP-Seq
updated 6.3 years ago by 5.9k • written 6.3 years ago by ▴ 120
0
votes
1
reply
2.3k
views
Comment: C: Bedtools Intersect related
6.3 years ago by chaudharyc61 ▴ 120
0
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1
reply
2.3k
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Comment: C: Bedtools Intersect related
6.3 years ago by chaudharyc61 ▴ 120
0
votes
5
replies
2.3k
views
Bedtools Intersect related
ChIP-Seq bed bedtools
updated 2.6 years ago by 45k • written 6.3 years ago by ▴ 120
0
votes
0
replies
4.0k
views
Comment: C: MACS2 result of FDR
6.4 years ago by chaudharyc61 ▴ 120
2
votes
3
replies
4.0k
views
MACS2 result of FDR
macs2 false discovery rate q-value chip-seq
updated 6.4 years ago by 154k • written 6.4 years ago by ▴ 120
0
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1
reply
2.0k
views
Comment: C: Peak calling using spp package
6.4 years ago by chaudharyc61 ▴ 120
1
vote
3
replies
2.0k
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Peak calling using spp package
ChIP-Seq peak calling spp package
updated 6.4 years ago by 105k • written 6.4 years ago by ▴ 120
0
votes
2
replies
1.3k
views
Error in peak calling using SPP package
ChIP-Seq Peak calling spp
6.4 years ago by chaudharyc61 ▴ 120
0
votes
1
reply
2.6k
views
MACS2 result analysis
peak-calling macs2 ChIP-Seq
updated 2.4 years ago by 45k • written 6.4 years ago by ▴ 120
0
votes
1
reply
3.2k
views
Comment: C: Bowtie2 Alignment Error
6.4 years ago by chaudharyc61 ▴ 120
38 results • Page 1 of 1
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