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3
votes
4
replies
747
views
Conceptual and statistical help in creating a synthetic RNAseq cohort from a real-world cohort of samples
statistics DESeq2 RNAseq
updated 4 months ago by 87k • written 4 months ago by ▴ 150
0
votes
1
reply
747
views
Comment: Comment: Conceptual and statistical help in creating a synthetic RNAseq cohort from a rea
4 months ago by K.patel5 ▴ 150
0
votes
2
replies
850
views
How to obtain Node/ Edge information from a Reactome Pathway
R API pathways reactome databases
updated 12 months ago by 150k • written 13 months ago by ▴ 150
0
votes
0
replies
850
views
Comment: Comment: How to obtain Node/ Edge information from a Reactome Pathway
13 months ago by K.patel5 ▴ 150
0
votes
0
replies
523
views
How to read count information from an old RGB based Agilent DNA array
CNV Agilent DNA WGS
20 months ago by K.patel5 ▴ 150
1
vote
0
replies
471
views
Can ART be used to generate a WES .sam file rather than a WGS file?
genomics biology WGS synthetic WES
2.5 years ago by K.patel5 ▴ 150
1
vote
5
replies
1.3k
views
Advice on how to generate synthetic Copy Number Variation data
CNV genomics biology synthetic WES
updated 2.5 years ago by ▴ 290 • written 2.5 years ago by ▴ 150
0
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0
replies
1.3k
views
Comment: Comment: Advice on how to generate synthetic Copy Number Variation data
2.5 years ago by K.patel5 ▴ 150
0
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1
reply
1.3k
views
Comment: Comment: Advice on how to generate synthetic Copy Number Variation data
2.5 years ago by K.patel5 ▴ 150
0
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0
replies
1.7k
views
Comment: Comment: How to add transcript and cpg site information to a bed file
2.5 years ago by K.patel5 ▴ 150
0
votes
0
replies
1.7k
views
Comment: Comment: How to add transcript and cpg site information to a bed file
2.5 years ago by K.patel5 ▴ 150
0
votes
1
reply
1.3k
views
VEP/ CADD error - ERROR: Assembly is GRCh38 but CADD file does not contain GRCh38 in header.
CADD trio WES VEP
updated 23 months ago by ▴ 750 • written 2.7 years ago by ▴ 150
0
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1
reply
1.6k
views
Comment: Comment: Plot GSEA software results into R
3.0 years ago by K.patel5 ▴ 150
0
votes
0
replies
573
views
Comment: Comment: Dataset or repository to look for RNA seq datasets using ribosomal depletion for
3.0 years ago by K.patel5 ▴ 150
3
votes
4
replies
1.7k
views
How to add transcript and cpg site information to a bed file
genomics annotations cpg BED
2.5 years ago by K.patel5 ▴ 150
0
votes
0
replies
2.3k
views
Comment: Comment: How to pipe bcftools query to bcftools fill-tags
3.1 years ago by K.patel5 ▴ 150
2
votes
2
replies
2.3k
views
How to pipe bcftools query to bcftools fill-tags
BCFtools variant-calling genomics
updated 22 months ago by 45k • written 3.1 years ago by ▴ 150
0
votes
0
replies
665
views
Comment: Comment: miRNA-lncRNA interaction prediction
3.1 years ago by K.patel5 ▴ 150
0
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0
replies
1.0k
views
Comment: Comment: RNAseq and future analysis
3.2 years ago by K.patel5 ▴ 150
0
votes
0
replies
1.3k
views
Comment: Comment: How to use BCFtools to keep variants if they are `DP > 10` in all samples?
3.2 years ago by K.patel5 ▴ 150
4
votes
3
replies
1.3k
views
How to use BCFtools to keep variants if they are `DP > 10` in all samples?
BCFtools variant-calling genomics
updated 22 months ago by 45k • written 3.2 years ago by ▴ 150
0
votes
1
reply
2.5k
views
Comment: Comment: Transcription factors database
3.2 years ago by K.patel5 ▴ 150
1
vote
0
replies
1.3k
views
Comment: Comment: Network Analysis - how to generate the edges and vertices dataset?
3.2 years ago by K.patel5 ▴ 150
0
votes
1
reply
3.2k
views
Comment: Comment: Biomart getLDS between two plant genomes does not work
3.2 years ago by K.patel5 ▴ 150
2
votes
0
replies
3.2k
views
Answer: Answer: Binary heatmap using R
3.2 years ago by K.patel5 ▴ 150
0
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1
reply
3.2k
views
Comment: Comment: Heatmap R
3.2 years ago by K.patel5 ▴ 150
1
vote
1
reply
2.9k
views
Comment: Comment: GATK4 - To be known or not to be known, that is the question.
3.2 years ago by K.patel5 ▴ 150
7
votes
3
replies
2.9k
views
GATK4 - To be known or not to be known, that is the question.
WGS WES flags GATK
updated 3.2 years ago by 5.8k • written 3.2 years ago by ▴ 150
0
votes
0
replies
1.9k
views
Comment: Comment: GATK4 -known-sites input Recalibrate Base Quality Scores
3.2 years ago by K.patel5 ▴ 150
2
votes
3
replies
2.5k
views
VEP - How to retrieve information from the INFO column of a vcf file neatly
tab vcf annotations VEP
updated 3.2 years ago by 12k • written 3.3 years ago by ▴ 150
0
votes
0
replies
2.5k
views
Comment: Comment: VEP - How to retrieve information from the INFO column of a vcf file neatly
3.3 years ago by K.patel5 ▴ 150
0
votes
0
replies
1.8k
views
Comment: Comment: Strangely too low P-value and Adjusted P-value(FDR) DESeq2 and edgeR
3.3 years ago by K.patel5 ▴ 150
0
votes
0
replies
5.1k
views
Comment: Comment: How to create specific .bed files for a panel of genes
3.3 years ago by K.patel5 ▴ 150
0
votes
0
replies
5.1k
views
Comment: Comment: How to create specific .bed files for a panel of genes
3.3 years ago by K.patel5 ▴ 150
7
votes
4
replies
5.1k
views
How to create specific .bed files for a panel of genes
panel genomics BED
3.3 years ago by K.patel5 ▴ 150
0
votes
0
replies
2.5k
views
Comment: Comment: Attempting to generate a bam.bai file but the output is not readable
3.3 years ago by K.patel5 ▴ 150
0
votes
1
reply
2.5k
views
Comment: Comment: Attempting to generate a bam.bai file but the output is not readable
3.3 years ago by K.patel5 ▴ 150
4
votes
4
replies
2.5k
views
Attempting to generate a bam.bai file but the output is not readable
exome samtools sequencing BAM
3.3 years ago by K.patel5 ▴ 150
3
votes
2
replies
1.3k
views
Is it necessary to test for multiple correction during differential expression analysis on microRNA data?
microRNA miRNA-seq differential expression stats
updated 4.2 years ago by 9.0k • written 4.2 years ago by ▴ 150
0
votes
1
reply
2.8k
views
Comment: C: How does miRdeep2 normalise sequences
4.3 years ago by K.patel5 ▴ 150
5
votes
6
replies
2.8k
views
How does miRdeep2 normalise sequences
miRNA sequencing miRDeep2
updated 3.7 years ago by ▴ 10 • written 4.3 years ago by ▴ 150
0
votes
0
replies
3.9k
views
Comment: C: Why do some gene set enrichment services do not ask for a background data set
5.2 years ago by K.patel5 ▴ 150
0
votes
1
reply
3.9k
views
Comment: C: Why do some gene set enrichment services do not ask for a background data set
5.2 years ago by K.patel5 ▴ 150
5
votes
4
replies
3.9k
views
Why do some gene set enrichment services do not ask for a background data set
enrichr panther GOrilla GSEA
5.2 years ago by K.patel5 ▴ 150
0
votes
0
replies
2.0k
views
Comment: C: Processing .raw files or out.tar files from Mass Spec
5.8 years ago by K.patel5 ▴ 150
1
vote
2
replies
2.0k
views
Processing .raw files or out.tar files from Mass Spec
mass spec R proteomics
5.8 years ago by K.patel5 ▴ 150
0
votes
1
reply
2.1k
views
Comment: C: fastq dump usage of microRNA-seq data
5.9 years ago by K.patel5 ▴ 150
0
votes
0
replies
2.1k
views
Comment: C: fastq dump usage of microRNA-seq data
5.9 years ago by K.patel5 ▴ 150
0
votes
0
replies
2.1k
views
Comment: C: fastq dump usage of microRNA-seq data
5.9 years ago by K.patel5 ▴ 150
7
votes
8
replies
2.1k
views
fastq dump usage of microRNA-seq data
RNA-Seq microRNA fastq
5.9 years ago by K.patel5 ▴ 150
51 results • Page 1 of 2
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