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440
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chromosome name confusion
chromosome
updated 22 months ago by 43k • written 22 months ago by ▴ 80
0
votes
2
replies
571
views
Splitting human bam file into fixed regions
Bam
updated 23 months ago by 100k • written 23 months ago by ▴ 80
4
votes
2
replies
596
views
Extract Reads From A Bam File That Fall OUTSIDE A Given Region
bam
updated 23 months ago by 161k • written 23 months ago by ▴ 80
1
vote
0
replies
468
views
Batch correction of whole genome bisulfite methylation data
WGBS
2.8 years ago by irfanwustl ▴ 80
0
votes
5
replies
1.3k
views
Comparing two bai files
BAM BAI
updated 2.9 years ago by 14k • written 2.9 years ago by ▴ 80
4
votes
4
replies
4.5k
views
Installing samtools version 1.12
samtools
updated 2.9 years ago by 104k • written 2.9 years ago by ▴ 80
0
votes
1
reply
619
views
Get overlapping features with certain fraction max
genome bedtools
updated 3.2 years ago by 161k • written 3.2 years ago by ▴ 80
0
votes
1
reply
726
views
List of all promoter position
gene
updated 3.2 years ago by 13k • written 3.2 years ago by ▴ 80
0
votes
1
reply
955
views
Genomic position to genomic feature
genome DMR Methylation
3.3 years ago by irfanwustl ▴ 80
1
vote
2
replies
685
views
paired reads aligned at the same genomic position
alignment bam
updated 3.6 years ago by ★ 1.4k • written 3.6 years ago by ▴ 80
0
votes
0
replies
618
views
How to know the aligned base of a specific position from a read
alignment bam
3.6 years ago by irfanwustl ▴ 80
1
vote
0
replies
723
views
Which read should be considered to calculate methylation value?
Methylation BISCUIT bam
updated 3.6 years ago by 20 • written 3.6 years ago by ▴ 80
0
votes
0
replies
785
views
"C strand" and "G strand" from bisulfite converted bam files
Methylation bam Bisulfite
3.6 years ago by irfanwustl ▴ 80
0
votes
1
reply
686
views
Resource for hands on experience
RNA-Seq Methylation
updated 3.6 years ago by 82k • written 3.7 years ago by ▴ 80
0
votes
1
reply
928
views
Blueprint WGBS pipeline
sequencing Blueprint WGBS
updated 19 months ago by ★ 9.4k • written 3.7 years ago by ▴ 80
0
votes
8
replies
3.8k
views
Bedtools intersect with header file
Bedtools
updated 3.9 years ago by 35k • written 4.4 years ago by ▴ 80
3
votes
2
replies
2.0k
views
All CpG position of hg38
sequence CpG
updated 3.9 years ago by 87k • written 3.9 years ago by ▴ 80
0
votes
2
replies
958
views
Biscuit: Is alignment stochastic?
alignment biscuit
updated 4.3 years ago by ▴ 120 • written 4.6 years ago by ▴ 80
0
votes
0
replies
1.4k
views
WGBS database for cell free dna
next-gen
updated 4.5 years ago by 20 • written 4.7 years ago by ▴ 80
3
votes
6
replies
5.1k
views
cram to bam conversion
alignment genome
4.6 years ago by irfanwustl ▴ 80
4
votes
2
replies
1.5k
views
Merging unaligned bam files
next-gen
4.6 years ago by irfanwustl ▴ 80
1
vote
1
reply
678
views
Paired Fastq files from Whole-Genome Bisulfite Sequencing?
next-gen
updated 4.7 years ago by 82k • written 4.7 years ago by ▴ 80
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