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478
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Replace heterozygous genotypes with minor allele in a vcf file
genotype SNP vcf heterozygous
8 months ago by kumar.vinod81 ▴ 340
2
votes
1
reply
1.8k
views
Plink to bimbam format for gemma-wrapper
gemma
updated 3.4 years ago by • 0 • written 3.9 years ago by ▴ 340
3
votes
4
replies
2.6k
views
6 follow
Segmentation fault in bcftools while changing the sample names
vcftools bcftools
updated 4.4 years ago by 154k • written 4.6 years ago by ▴ 340
0
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0
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2.2k
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Comment: Comment: How to calculate frequency of heterozygous SNPs in multisample VCF file and to
4.6 years ago by kumar.vinod81 ▴ 340
0
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2
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2.2k
views
How to calculate frequency of heterozygous SNPs in multisample VCF file and to filter out over a specific range?
bcftools vcftools
4.6 years ago by kumar.vinod81 ▴ 340
3
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0
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2.6k
views
Answer: Answer: Segmentation fault in bcftools while changing the sample names
4.6 years ago by kumar.vinod81 ▴ 340
2
votes
1
reply
2.6k
views
How to speed up the GenotypeGVCF?
GenotypeGVCF GATK
updated 4.9 years ago by 166k • written 4.9 years ago by ▴ 340
1
vote
8
replies
3.6k
views
SNPRelate; Plot looking blank
SNPRelate
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 340
0
votes
2
replies
4.0k
views
Phenotypic Variation Explained By Snps In Gwas
snp
updated 6.1 years ago by 20 • written 13.0 years ago by ▴ 340
0
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0
replies
2.2k
views
Interpretation for regression coeffecient and T statistics from haplotype association in PLINK
haplotype association
updated 6.5 years ago by 20 • written 9.5 years ago by ▴ 340
3
votes
1
reply
2.2k
views
Is Re-Sequencing Of Trait-Associated-Regions Required To Capture The Causal Variant?
variant snp
updated 6.7 years ago by 20 • written 12.6 years ago by ▴ 340
0
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0
replies
1.9k
views
Estimation of haplotype block frequency and phylogentic analysis
hapltype frequency estimation phylogenetic tree
updated 6.9 years ago by 20 • written 10.2 years ago by ▴ 340
0
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0
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6.4k
views
Comment: C: Phenotypic Variation Explained By Snps In Gwas
7.1 years ago by kumar.vinod81 ▴ 340
0
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0
replies
954
views
phenotypic variance explained by non-additive model in GenABEL
gwas non-additive model
7.1 years ago by kumar.vinod81 ▴ 340
0
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1
reply
6.4k
views
Comment: C: Phenotypic Variation Explained By Snps In Gwas
7.1 years ago by kumar.vinod81 ▴ 340
0
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1
reply
1.8k
views
Answer: A: recode SNPs ATGC illumina
7.3 years ago by kumar.vinod81 ▴ 340
0
votes
0
replies
1.1k
views
VIFGC_ovedom function in GenABEL
Genabel non-additive models
7.3 years ago by kumar.vinod81 ▴ 340
1
vote
1
reply
2.3k
views
Simulation in quantitative genetics, mapping and gwas
gwas simulation
9.4 years ago by kumar.vinod81 ▴ 340
1
vote
1
reply
2.5k
views
Boxplot of phenotype~SNP1:SNP2
SNP boxplot
9.4 years ago by kumar.vinod81 ▴ 340
0
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0
replies
2.9k
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Comment: C: haplotype association with quantitative traits
9.6 years ago by kumar.vinod81 ▴ 340
0
votes
2
replies
2.9k
views
haplotype association with quantitative traits
GWAS haplotype
updated 9.6 years ago by ★ 1.0k • written 9.6 years ago by ▴ 340
1
vote
0
replies
3.4k
views
Comment: C: Data format to produces a heatmap like this
10.0 years ago by kumar.vinod81 ▴ 340
0
votes
1
reply
2.0k
views
Is academic license for fastPHASE disabled?
fastPHASE
updated 3.1 years ago by 45k • written 10.1 years ago by ▴ 340
3
votes
1
reply
2.2k
views
GenABEL: missing sex in plant gwas
genabel gwas
updated 3.4 years ago by 45k • written 10.5 years ago by ▴ 340
2
votes
0
replies
2.9k
views
How to start a SNP prioritization in GWAS
gwas snp-prioritization
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 340
0
votes
1
reply
2.2k
views
FastPhase:Output file not written in the specified folder
fastphase
updated 10.5 years ago by 20 • written 10.5 years ago by ▴ 340
1
vote
1
reply
4.0k
views
fastPHASE output format to PLINK input format
PLINK fastPHASE
updated 2.6 years ago by 45k • written 10.5 years ago by ▴ 340
0
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0
replies
3.4k
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Comment: C: combining gds files into one gds file
10.5 years ago by kumar.vinod81 ▴ 340
0
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0
replies
2.2k
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Comment: C: Can SNP arrays distinguish 3 different alleles at a certain position?
10.5 years ago by kumar.vinod81 ▴ 340
0
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0
replies
8.5k
views
Comment: Comment: ROH by PLINK
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 340
0
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0
replies
5.8k
views
Comment: Comment: PED & MAP file extension
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 340
10
votes
4
replies
7.4k
views
Need Recommendation On Good Tutorials For Performing Gwas
gwas
updated 2.7 years ago by 45k • written 12.6 years ago by ▴ 340
3
votes
2
replies
3.6k
views
SNPRelate: how to give specific color to a population in PCA plot
SNPRelate
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 340
0
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0
replies
8.0k
views
Comment: Comment: how can I make input file for Haploview from Output files of inferred haplotypes
updated 4.0 years ago by 45k • written 11.1 years ago by ▴ 340
0
votes
1
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8.0k
views
Comment: Comment: how can I make input file for Haploview from Output files of inferred haplotypes
updated 4.0 years ago by 45k • written 11.1 years ago by ▴ 340
0
votes
0
replies
2.0k
views
Comment: Comment: generating MAP input file
updated 3.9 years ago by 45k • written 11.1 years ago by ▴ 340
0
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1
reply
3.6k
views
Comment: C: SNPRelate; Plot looking blank
11.2 years ago by kumar.vinod81 ▴ 340
0
votes
1
reply
3.6k
views
Comment: Comment: SNPRelate; Plot looking blank
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 340
0
votes
1
reply
3.6k
views
Comment: Comment: SNPRelate; Plot looking blank
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 340
0
votes
0
replies
2.2k
views
Haplotype based NJ tree to have more accurate about subpopulations
haplotype
11.2 years ago by kumar.vinod81 ▴ 340
0
votes
1
reply
1.9k
views
Imputation using MACH 1.0
SNP-Imputation
updated 4.1 years ago by 45k • written 11.5 years ago by ▴ 340
0
votes
3
replies
2.7k
views
Any Tool Which Remark The Boundries Like Regulatory, Intron And Exon In Gene Sequence
utr gene exon
updated 2.3 years ago by 45k • written 12.6 years ago by ▴ 340
2
votes
1
reply
3.2k
views
Plink --Update-Alleles Command Is Not Resulting In Right Way
plink command-line
updated 11.5 years ago by 20 • written 12.6 years ago by ▴ 340
0
votes
1
reply
4.5k
views
Comment: C: How To Calculate Recombination Rate From R^2 Data?
11.7 years ago by kumar.vinod81 ▴ 340
0
votes
0
replies
2.4k
views
Association Mapping: Can Mlm Find More Association Than Glm?
11.7 years ago by kumar.vinod81 ▴ 340
1
vote
0
replies
4.2k
views
Haplotype Reconstruction And Gwas For Quantitative Traits In Plants
gwas
updated 11.8 years ago by 20 • written 12.6 years ago by ▴ 340
0
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0
replies
9.0k
views
Answer: A: Imputation Without A Reference Panel
11.8 years ago by kumar.vinod81 ▴ 340
0
votes
0
replies
10k
views
Comment: C: Arlequin Input Format
11.8 years ago by kumar.vinod81 ▴ 340
0
votes
0
replies
9.0k
views
Comment: C: What Does Bed Stand For?
11.8 years ago by kumar.vinod81 ▴ 340
0
votes
1
reply
10k
views
Answer: A: Arlequin Input Format
11.8 years ago by kumar.vinod81 ▴ 340
108 results • Page 1 of 3
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