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Plink to bimbam format for gemma-wrapper
gemma
updated 12 days ago by • 0 • written 7 months ago by ▴ 320
3
votes
4
replies
860
views
6 follow
Segmentation fault in bcftools while changing the sample names
vcftools bcftools
updated 12 months ago by 117k • written 15 months ago by ▴ 320
0
votes
0
replies
1.0k
views
Comment: Comment: How to calculate frequency of heterozygous SNPs in multisample VCF file and to
15 months ago by kumar.vinod81 ▴ 320
0
votes
2
replies
1.0k
views
How to calculate frequency of heterozygous SNPs in multisample VCF file and to filter out over a specific range?
bcftools vcftools
15 months ago by kumar.vinod81 ▴ 320
3
votes
0
replies
860
views
Answer: Answer: Segmentation fault in bcftools while changing the sample names
15 months ago by kumar.vinod81 ▴ 320
2
votes
1
reply
1.3k
views
How to speed up the GenotypeGVCF?
GenotypeGVCF GATK
updated 18 months ago by 146k • written 18 months ago by ▴ 320
1
vote
8
replies
2.3k
views
SNPRelate; Plot looking blank
SNPRelate
updated 6 months ago by 36k • written 7.9 years ago by ▴ 320
0
votes
2
replies
3.0k
views
Phenotypic Variation Explained By Snps In Gwas
snp
updated 2.8 years ago by 20 • written 9.6 years ago by ▴ 320
0
votes
0
replies
1.8k
views
Interpretation for regression coeffecient and T statistics from haplotype association in PLINK
haplotype association
updated 3.2 years ago by 20 • written 6.2 years ago by ▴ 320
3
votes
1
reply
1.7k
views
Is Re-Sequencing Of Trait-Associated-Regions Required To Capture The Causal Variant?
variant snp
updated 3.3 years ago by 20 • written 9.3 years ago by ▴ 320
0
votes
0
replies
1.5k
views
Estimation of haplotype block frequency and phylogentic analysis
hapltype frequency estimation phylogenetic tree
updated 3.6 years ago by 20 • written 6.9 years ago by ▴ 320
0
votes
0
replies
4.6k
views
Comment: C: Phenotypic Variation Explained By Snps In Gwas
3.7 years ago by kumar.vinod81 ▴ 320
0
votes
0
replies
584
views
phenotypic variance explained by non-additive model in GenABEL
gwas non-additive model
3.7 years ago by kumar.vinod81 ▴ 320
0
votes
1
reply
4.6k
views
Comment: C: Phenotypic Variation Explained By Snps In Gwas
3.7 years ago by kumar.vinod81 ▴ 320
0
votes
1
reply
1.1k
views
Answer: A: recode SNPs ATGC illumina
4.0 years ago by kumar.vinod81 ▴ 320
0
votes
0
replies
612
views
VIFGC_ovedom function in GenABEL
Genabel non-additive models
4.0 years ago by kumar.vinod81 ▴ 320
1
vote
1
reply
1.7k
views
Simulation in quantitative genetics, mapping and gwas
gwas simulation
6.0 years ago by kumar.vinod81 ▴ 320
1
vote
1
reply
1.8k
views
Boxplot of phenotype~SNP1:SNP2
SNP boxplot
6.0 years ago by kumar.vinod81 ▴ 320
0
votes
0
replies
2.1k
views
Comment: C: haplotype association with quantitative traits
6.2 years ago by kumar.vinod81 ▴ 320
0
votes
2
replies
2.1k
views
haplotype association with quantitative traits
GWAS haplotype
updated 6.2 years ago by ★ 1.0k • written 6.2 years ago by ▴ 320
1
vote
0
replies
2.4k
views
Comment: C: Data format to produces a heatmap like this
6.7 years ago by kumar.vinod81 ▴ 320
0
votes
1
reply
1.4k
views
Is academic license for fastPHASE disabled?
fastPHASE
updated 6.8 years ago by 21k • written 6.8 years ago by ▴ 320
3
votes
1
reply
1.7k
views
GenABEL: missing sex in plant gwas
genabel gwas
updated 5 weeks ago by 36k • written 7.1 years ago by ▴ 320
2
votes
0
replies
2.4k
views
How to start a SNP prioritization in GWAS
gwas snp prioritization
updated 7.0 years ago by 20 • written 7.2 years ago by ▴ 320
0
votes
1
reply
1.6k
views
FastPhase:Output file not written in the specified folder
fastphase
updated 7.2 years ago by 20 • written 7.2 years ago by ▴ 320
1
vote
1
reply
3.2k
views
fastPHASE output format to PLINK input format
fastPHASE PLINK File format
7.2 years ago by kumar.vinod81 ▴ 320
0
votes
0
replies
2.6k
views
Comment: C: combining gds files into one gds file
7.2 years ago by kumar.vinod81 ▴ 320
0
votes
0
replies
1.5k
views
Comment: C: Can SNP arrays distinguish 3 different alleles at a certain position?
7.2 years ago by kumar.vinod81 ▴ 320
0
votes
0
replies
7.1k
views
Comment: C: ROH by PLINK
7.2 years ago by kumar.vinod81 ▴ 320
0
votes
0
replies
4.3k
views
Comment: C: PED & MAP file extension
7.2 years ago by kumar.vinod81 ▴ 320
10
votes
4
replies
6.4k
views
Need Recommendation On Good Tutorials For Performing Gwas
gwas tutorial
updated 7.3 years ago by ▴ 10 • written 9.3 years ago by ▴ 320
3
votes
2
replies
2.7k
views
SNPRelate: how to give specific color to a population in PCA plot
SNPRelate
updated 6 weeks ago by 36k • written 7.3 years ago by ▴ 320
0
votes
0
replies
6.6k
views
Comment: Comment: how can I make input file for Haploview from Output files of inferred haplotypes
updated 8 months ago by 36k • written 7.8 years ago by ▴ 320
0
votes
1
reply
6.6k
views
Comment: Comment: how can I make input file for Haploview from Output files of inferred haplotypes
updated 8 months ago by 36k • written 7.8 years ago by ▴ 320
0
votes
0
replies
1.6k
views
Comment: Comment: generating MAP input file
updated 7 months ago by 36k • written 7.8 years ago by ▴ 320
0
votes
1
reply
2.3k
views
Comment: C: SNPRelate; Plot looking blank
7.9 years ago by kumar.vinod81 ▴ 320
0
votes
1
reply
2.3k
views
Comment: Comment: SNPRelate; Plot looking blank
updated 6 months ago by 36k • written 7.9 years ago by ▴ 320
0
votes
1
reply
2.3k
views
Comment: Comment: SNPRelate; Plot looking blank
updated 6 months ago by 36k • written 7.9 years ago by ▴ 320
0
votes
0
replies
1.8k
views
Haplotype based NJ tree to have more accurate about subpopulations
haplotype
7.9 years ago by kumar.vinod81 ▴ 320
0
votes
1
reply
1.4k
views
Imputation using MACH 1.0
SNP-Imputation
updated 9 months ago by 36k • written 8.1 years ago by ▴ 320
0
votes
3
replies
1.8k
views
Any Tool Which Remark The Boundries Like Regulatory, Intron And Exon In Gene Sequence
tool gene exon utr
updated 9 months ago by 36k • written 9.3 years ago by ▴ 320
2
votes
1
reply
2.7k
views
Plink --Update-Alleles Command Is Not Resulting In Right Way
plink command-line
updated 8.2 years ago by 20 • written 9.2 years ago by ▴ 320
0
votes
1
reply
3.7k
views
Comment: C: How To Calculate Recombination Rate From R^2 Data?
8.3 years ago by kumar.vinod81 ▴ 320
0
votes
0
replies
2.0k
views
Association Mapping: Can Mlm Find More Association Than Glm?
8.3 years ago by kumar.vinod81 ▴ 320
0
votes
0
replies
3.6k
views
Haplotype Reconstruction And Gwas For Quantitative Traits In Plants
gwas
updated 8.4 years ago by 20 • written 9.3 years ago by ▴ 320
0
votes
0
replies
6.8k
views
Answer: A: Imputation Without A Reference Panel
8.4 years ago by kumar.vinod81 ▴ 320
0
votes
0
replies
8.3k
views
Comment: C: Arlequin Input Format
8.4 years ago by kumar.vinod81 ▴ 320
0
votes
0
replies
7.6k
views
Comment: C: What Does Bed Stand For?
8.4 years ago by kumar.vinod81 ▴ 320
0
votes
1
reply
8.3k
views
Answer: A: Arlequin Input Format
8.4 years ago by kumar.vinod81 ▴ 320
1
vote
0
replies
3.9k
views
Answer: A: Gwas: Adjust For Population Stratification In Impute2 Output
8.4 years ago by kumar.vinod81 ▴ 320
107 results • Page 1 of 3
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