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0
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0
replies
175
views
admixfrog for high-coverage data
introgression
6 weeks ago by gubrins ▴ 290
3
votes
3
replies
651
views
Whole-genome alignment visualization
cactus maf bigmaf
updated 8 weeks ago by ▴ 60 • written 10 weeks ago by ▴ 290
3
votes
1
reply
270
views
gene alignment (microsynteny)
alignment microsynteny
updated 8 weeks ago by ★ 3.8k • written 8 weeks ago by ▴ 290
0
votes
3
replies
629
views
Gemoma error with gff file
gemoma annotation
4 months ago by gubrins ▴ 290
0
votes
2
replies
458
views
Extract reference and alternate SNPs for different samples
vcftools bcftools SNPs
updated 7 months ago by 141k • written 7 months ago by ▴ 290
2
votes
1
reply
844
views
Visualize mitochondrial genome
mitochondria mitogenome
updated 10 months ago by ★ 1.2k • written 10 months ago by ▴ 290
1
vote
6
replies
1.8k
views
Problem creating new conda environment
conda
updated 14 months ago by 43k • written 19 months ago by ▴ 290
0
votes
3
replies
727
views
problem accesing perl script
perl
updated 17 months ago by ★ 2.0k • written 17 months ago by ▴ 290
0
votes
1
reply
473
views
qc3C software for testing Hi-C data
qc3C Hi-C
updated 18 months ago by ▴ 100 • written 19 months ago by ▴ 290
8
votes
12
replies
7.2k
views
unexpected error in conda when installing new packages or environments
conda
updated 16 months ago by ▴ 740 • written 18 months ago by ▴ 290
3
votes
3
replies
944
views
Remove NA from file while reading
python R
updated 19 months ago by 14k • written 19 months ago by ▴ 290
3
votes
8
replies
1.5k
views
Decontamination of genome assembly
genome assembly
updated 20 months ago by 54k • written 20 months ago by ▴ 290
1
vote
2
replies
862
views
problem sorting bed and bam files
bedtools
updated 10 months ago by 43k • written 20 months ago by ▴ 290
0
votes
2
replies
588
views
QC Hi-C data
QC Hi-C
21 months ago by gubrins ▴ 290
2
votes
4
replies
800
views
Counting variants with SnpEff
snpEff
updated 23 months ago by 161k • written 23 months ago by ▴ 290
0
votes
8
replies
1.8k
views
sliding windows over genome
bash
23 months ago by gubrins ▴ 290
0
votes
1
reply
835
views
Calculating bootstrap for psmc
psmc
updated 24 months ago by • 0 • written 2.5 years ago by ▴ 290
2
votes
1
reply
1.6k
views
how to exclude a region with bcftools
bcftools
2.0 years ago by gubrins ▴ 290
6
votes
6
replies
828
views
Remove observations from txt file
bash
updated 2.0 years ago by 21k • written 2.0 years ago by ▴ 290
1
vote
1
reply
479
views
create vcf from bed coordinates
bash
2.0 years ago by gubrins ▴ 290
4
votes
2
replies
656
views
Plink ped format
Plink
2.1 years ago by gubrins ▴ 290
0
votes
0
replies
438
views
Scale total height phylogenetic tree
phylogeny
2.3 years ago by gubrins ▴ 290
7
votes
3
replies
3.2k
views
iqtree vs raxml
phylogeny
updated 2.3 years ago by 100k • written 2.3 years ago by ▴ 290
3
votes
3
replies
638
views
Filter number of N's fasta file
bash programming fasta
updated 2.4 years ago by 141k • written 2.4 years ago by ▴ 290
1
vote
3
replies
1.1k
views
No quality in non-variant sites GATK
GATK
2.4 years ago by gubrins ▴ 290
0
votes
5
replies
1.1k
views
group maximum likelihood's trees together
iqtree ML phylogeny raxml
updated 2.4 years ago by 54k • written 2.4 years ago by ▴ 290
2
votes
2
replies
582
views
Selecting fastas for sliding windows
bash
updated 2.4 years ago by 21k • written 2.4 years ago by ▴ 290
2
votes
2
replies
541
views
print next line IF statement
bash
2.5 years ago by gubrins ▴ 290
0
votes
0
replies
880
views
plotting roh from bcftools
bcftools roh plotting
2.6 years ago by gubrins ▴ 290
8
votes
6
replies
991
views
change name several files
bash
2.7 years ago by gubrins ▴ 290
0
votes
0
replies
520
views
Introgression analyses
introgression Dsuite analyses
2.7 years ago by gubrins ▴ 290
6
votes
6
replies
1.9k
views
Genome-wide heterozygosity
heterozygosity genome
2.5 years ago by gubrins ▴ 290
0
votes
3
replies
1.5k
views
GNU plot problem
psmc bash
2.8 years ago by gubrins ▴ 290
4
votes
4
replies
1.6k
views
How much weights a million reads
sequencing
2.9 years ago by gubrins ▴ 290
1
vote
2
replies
652
views
merge paired-end sequencing
SNP merge gatk
3.1 years ago by gubrins ▴ 290
0
votes
0
replies
1.1k
views
Calculating ROHs and Heterozygosity from GATK
ROHs GATK Heterozygosity
3.2 years ago by gubrins ▴ 290
1
vote
4
replies
1.1k
views
SRA TOOLKIT error
SRA
2.0 years ago by gubrins ▴ 290
1
vote
0
replies
1000
views
Convert vcf to eigenstrat
vcf eigenstrat
3.3 years ago by gubrins ▴ 290
0
votes
0
replies
987
views
Multisample BAM file
bam snp calling samtools
written 3.3 years ago by ▴ 290
3
votes
6
replies
1.3k
views
Filter per tile quality
fastqc tile genomes
3.4 years ago by gubrins ▴ 290
9
votes
8
replies
8.2k
views
genome coverage visualization
bam genome coverage bedtools
updated 2.9 years ago by ★ 3.4k • written 3.4 years ago by ▴ 290
4
votes
7
replies
1.2k
views
problem with a for loop
linux shell loop
updated 3.4 years ago by 20 • written 3.5 years ago by ▴ 290
5
votes
6
replies
945
views
where to practise bash
bash programming learning
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 290
11
votes
4
replies
961
views
transfer data from cluster to cluster
cluster data
3.5 years ago by gubrins ▴ 290
5
votes
8
replies
1.1k
views
repeating bwa alignment
bwa whole-genome sequencing
updated 3.5 years ago by 20 • written 3.6 years ago by ▴ 290
13
votes
10
replies
4.8k
views
comparing softwares for trimming adaptors
trimming adaptors cutadapt trimmomatic
3.6 years ago by gubrins ▴ 290
5
votes
4
replies
12k
views
saving ggplotly as html
R ggplotly
updated 3.7 years ago by 3.2k • written 3.7 years ago by ▴ 290
5
votes
6
replies
1.9k
views
Merging bam files with GATK
gatk bam merge
3.7 years ago by gubrins ▴ 290
5
votes
4
replies
1.5k
views
high sequence duplication ddRAD
ddrad duplication sequencing SNP
updated 3.8 years ago by 12k • written 3.8 years ago by ▴ 290
2
votes
1
reply
1.6k
views
Tutorial STACKS ddRADseq
STACKS ddRADseq
updated 3.8 years ago by 141k • written 3.8 years ago by ▴ 290
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