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questions
0
votes
0
replies
231
views
admixfrog for high-coverage data
introgression
7 months ago by
gubrins
▴ 350
3
votes
3
replies
955
views
Whole-genome alignment visualization
cactus
maf
bigmaf
updated 8 months ago by
SanjidaR_NCBI
▴ 60 • written 8 months ago by
gubrins
▴ 350
3
votes
1
reply
486
views
gene alignment (microsynteny)
alignment
microsynteny
updated 8 months ago by
cmdcolin
★ 4.0k • written 8 months ago by
gubrins
▴ 350
0
votes
3
replies
885
views
Gemoma error with gff file
gemoma
annotation
10 months ago by
gubrins
▴ 350
0
votes
2
replies
573
views
Extract reference and alternate SNPs for different samples
vcftools
bcftools
SNPs
updated 14 months ago by
GenoMax
146k • written 14 months ago by
gubrins
▴ 350
2
votes
1
reply
1.2k
views
Visualize mitochondrial genome
mitochondria
mitogenome
updated 16 months ago by
shelkmike
★ 1.4k • written 16 months ago by
gubrins
▴ 350
1
vote
6
replies
2.3k
views
Problem creating new conda environment
conda
updated 20 months ago by
Ram
44k • written 2.1 years ago by
gubrins
▴ 350
0
votes
3
replies
914
views
problem accesing perl script
perl
updated 23 months ago by
Wayne
★ 2.1k • written 23 months ago by
gubrins
▴ 350
0
votes
1
reply
586
views
qc3C software for testing Hi-C data
qc3C
Hi-C
updated 2.0 years ago by
M.O.L.S
▴ 100 • written 2.1 years ago by
gubrins
▴ 350
8
votes
12
replies
8.6k
views
unexpected error in conda when installing new packages or environments
conda
updated 23 months ago by
Jesse
▴ 850 • written 2.0 years ago by
gubrins
▴ 350
3
votes
3
replies
1.2k
views
Remove NA from file while reading
python
R
updated 2.1 years ago by
dariober
15k • written 2.1 years ago by
gubrins
▴ 350
3
votes
8
replies
1.9k
views
Decontamination of genome assembly
genome
assembly
updated 2.2 years ago by
Michael
55k • written 2.2 years ago by
gubrins
▴ 350
1
vote
2
replies
1.0k
views
problem sorting bed and bam files
bedtools
updated 16 months ago by
Ram
44k • written 2.2 years ago by
gubrins
▴ 350
0
votes
2
replies
721
views
QC Hi-C data
QC
Hi-C
2.3 years ago by
gubrins
▴ 350
2
votes
4
replies
922
views
Counting variants with SnpEff
snpEff
updated 2.4 years ago by
Pierre Lindenbaum
164k • written 2.4 years ago by
gubrins
▴ 350
0
votes
8
replies
2.3k
views
sliding windows over genome
bash
2.5 years ago by
gubrins
▴ 350
1
vote
1
reply
977
views
Calculating bootstrap for psmc
psmc
updated 2.5 years ago by
ziwei.liu
▴ 10 • written 3.0 years ago by
gubrins
▴ 350
3
votes
1
reply
2.0k
views
how to exclude a region with bcftools
bcftools
2.5 years ago by
gubrins
▴ 350
6
votes
6
replies
1.0k
views
Remove observations from txt file
bash
updated 2.6 years ago by
cpad0112
21k • written 2.6 years ago by
gubrins
▴ 350
1
vote
1
reply
574
views
create vcf from bed coordinates
bash
2.6 years ago by
gubrins
▴ 350
4
votes
2
replies
755
views
Plink ped format
Plink
2.6 years ago by
gubrins
▴ 350
2
votes
0
replies
524
views
Scale total height phylogenetic tree
phylogeny
2.8 years ago by
gubrins
▴ 350
7
votes
3
replies
4.0k
views
iqtree vs raxml
phylogeny
updated 2.8 years ago by
Istvan Albert
101k • written 2.8 years ago by
gubrins
▴ 350
3
votes
3
replies
754
views
Filter number of N's fasta file
bash
programming
fasta
updated 2.9 years ago by
GenoMax
146k • written 2.9 years ago by
gubrins
▴ 350
1
vote
3
replies
1.2k
views
No quality in non-variant sites GATK
GATK
2.9 years ago by
gubrins
▴ 350
0
votes
5
replies
1.3k
views
group maximum likelihood's trees together
iqtree
ML
phylogeny
raxml
updated 3.0 years ago by
Michael
55k • written 3.0 years ago by
gubrins
▴ 350
2
votes
2
replies
679
views
Selecting fastas for sliding windows
bash
updated 3.0 years ago by
cpad0112
21k • written 3.0 years ago by
gubrins
▴ 350
2
votes
2
replies
591
views
print next line IF statement
bash
3.0 years ago by
gubrins
▴ 350
0
votes
0
replies
1.0k
views
plotting roh from bcftools
bcftools
roh
plotting
3.1 years ago by
gubrins
▴ 350
8
votes
6
replies
1.1k
views
change name several files
bash
3.2 years ago by
gubrins
▴ 350
0
votes
0
replies
579
views
Introgression analyses
introgression
Dsuite
analyses
3.2 years ago by
gubrins
▴ 350
6
votes
6
replies
2.2k
views
Genome-wide heterozygosity
heterozygosity
genome
3.0 years ago by
gubrins
▴ 350
0
votes
3
replies
1.7k
views
GNU plot problem
psmc
bash
3.3 years ago by
gubrins
▴ 350
4
votes
4
replies
1.9k
views
How much weights a million reads
sequencing
3.4 years ago by
gubrins
▴ 350
1
vote
2
replies
722
views
merge paired-end sequencing
SNP
merge
gatk
3.6 years ago by
gubrins
▴ 350
0
votes
0
replies
1.3k
views
Calculating ROHs and Heterozygosity from GATK
ROHs
GATK
Heterozygosity
3.7 years ago by
gubrins
▴ 350
1
vote
4
replies
1.3k
views
SRA TOOLKIT error
SRA
2.5 years ago by
gubrins
▴ 350
1
vote
0
replies
1.1k
views
Convert vcf to eigenstrat
vcf
eigenstrat
3.8 years ago by
gubrins
▴ 350
0
votes
0
replies
1.1k
views
Multisample BAM file
bam
snp calling
samtools
written 3.9 years ago by
gubrins
▴ 350
3
votes
6
replies
1.5k
views
Filter per tile quality
fastqc
tile
genomes
3.9 years ago by
gubrins
▴ 350
9
votes
8
replies
9.5k
views
genome coverage visualization
bam
genome
coverage
bedtools
updated 3.4 years ago by
bernatgel
★ 3.4k • written 4.0 years ago by
gubrins
▴ 350
4
votes
7
replies
1.3k
views
problem with a for loop
linux
shell
loop
updated 4.0 years ago by
Biostar
20 • written 4.1 years ago by
gubrins
▴ 350
5
votes
6
replies
1.1k
views
where to practise bash
bash
programming
learning
updated 4.0 years ago by
JC
13k • written 4.0 years ago by
gubrins
▴ 350
11
votes
4
replies
1.1k
views
transfer data from cluster to cluster
cluster
data
4.0 years ago by
gubrins
▴ 350
5
votes
8
replies
1.3k
views
repeating bwa alignment
bwa
whole-genome sequencing
updated 4.0 years ago by
Biostar
20 • written 4.1 years ago by
gubrins
▴ 350
13
votes
10
replies
5.8k
views
comparing softwares for trimming adaptors
trimming
adaptors
cutadapt
trimmomatic
4.1 years ago by
gubrins
▴ 350
6
votes
4
replies
13k
views
saving ggplotly as html
R
ggplotly
updated 4.2 years ago by
antonioggsousa
3.2k • written 4.2 years ago by
gubrins
▴ 350
5
votes
6
replies
2.1k
views
Merging bam files with GATK
gatk
bam
merge
4.2 years ago by
gubrins
▴ 350
5
votes
4
replies
1.7k
views
high sequence duplication ddRAD
ddrad
duplication
sequencing
SNP
updated 4.3 years ago by
GouthamAtla
12k • written 4.3 years ago by
gubrins
▴ 350
2
votes
1
reply
1.7k
views
Tutorial STACKS ddRADseq
STACKS
ddRADseq
updated 4.3 years ago by
GenoMax
146k • written 4.3 years ago by
gubrins
▴ 350
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