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5
votes
1
reply
543
views
How can I download SNPs from HapMap European populations?
snp annotation gtex
updated 20 months ago by 2.8k • written 20 months ago by ▴ 140
0
votes
0
replies
408
views
inquiry related to gtex normalization
gtex normalization gene count
21 months ago by rheab1230 ▴ 140
3
votes
2
replies
782
views
convert .bed format to .txt format
gene expression bed count
21 months ago by rheab1230 ▴ 140
2
votes
4
replies
956
views
deseq2 normalization for Gtex datasets
gene GTEX expression deseq2 tissue normalization brain
updated 21 months ago by 3.9k • written 21 months ago by ▴ 140
0
votes
0
replies
336
views
GTEx ID between vcf and gene count file
gene GTEx vcf count ID
21 months ago by rheab1230 ▴ 140
0
votes
0
replies
310
views
How to get SNP annotation file for GTEx data
SNP GTEx annotation rsid
22 months ago by rheab1230 ▴ 140
0
votes
0
replies
310
views
peertool to generate covariates file give an error
SNP covariates peertool gene
23 months ago by rheab1230 ▴ 140
0
votes
1
reply
555
views
how to predict gene expression from genotype file using already developed elastic net model
gene expression snp vcf
updated 23 months ago by 161k • written 23 months ago by ▴ 140
5
votes
7
replies
1.4k
views
error while using cyvcf2 to parse the vcf file
cyvcf2 vcf htslib
updated 11 months ago by 43k • written 23 months ago by ▴ 140
1
vote
2
replies
1.7k
views
bcftools error
vcf bcftools genotype
updated 11 months ago by 43k • written 23 months ago by ▴ 140
1
vote
2
replies
1.0k
views
plotting venndiagram and find the overlap in R for rsid between model and vcf files.
rsid venndiagram overlap
updated 2.0 years ago by 4.6k • written 2.0 years ago by ▴ 140
0
votes
2
replies
736
views
filtering out rsid from vcf files.
vcf genotype rsid gene
updated 2.2 years ago by 100k • written 2.2 years ago by ▴ 140
0
votes
2
replies
791
views
split gtex genotype file by chromosome number
genotype data vcf GTEx split_by_Chromosome
2.2 years ago by rheab1230 ▴ 140
0
votes
0
replies
494
views
GTEx RNA-seq data
tissue expression count gene specific GTEx
2.2 years ago by rheab1230 ▴ 140
0
votes
0
replies
558
views
imputed dosage to vcf
vcf impute dosage plink conversion
2.3 years ago by rheab1230 ▴ 140
0
votes
3
replies
1.6k
views
imputed dosage values for vcf files
vcf genotype predixcan dosage
updated 13 months ago by 43k • written 2.3 years ago by ▴ 140
0
votes
2
replies
1.4k
views
error while running job in michigan imputation server
vcf reference-genome michigan-imputation-server
updated 11 months ago by ▴ 840 • written 2.3 years ago by ▴ 140
0
votes
0
replies
485
views
how to get info from GTExsampleattributesDS.txt file
GTEx expression Sampleattributes.txt gene data SNP
2.3 years ago by rheab1230 ▴ 140
0
votes
3
replies
1.3k
views
packages installation in linux error
conda linux sqlite dbdriver r
updated 2.4 years ago by 3.2k • written 2.4 years ago by ▴ 140
0
votes
1
reply
566
views
DCA-MOL software installation
installation visualization DCA-MOL
2.4 years ago by rheab1230 ▴ 140
0
votes
0
replies
435
views
error while running predictdb tutorial
train predictdb model
updated 2.5 years ago by 43k • written 2.5 years ago by ▴ 140
1
vote
2
replies
913
views
error while annotating vcf file using snpEff
geneid annotation snpEff ensembl
2.5 years ago by rheab1230 ▴ 140
0
votes
1
reply
1.0k
views
DESeq2
RNA-seq DESEq2
updated 11 months ago by 43k • written 2.5 years ago by ▴ 140
5
votes
7
replies
1.6k
views
rna-seq data
extract tissues certain samples
2.5 years ago by rheab1230 ▴ 140
1
vote
3
replies
854
views
correlation analysis
correlation vcf genes.
updated 2.5 years ago by 87k • written 2.5 years ago by ▴ 140
0
votes
1
reply
572
views
error related to module
conda python h5py module
updated 2.6 years ago by 43k • written 2.6 years ago by ▴ 140
0
votes
0
replies
451
views
predixcan error
vcf predixcan
updated 13 months ago by 43k • written 2.6 years ago by ▴ 140
0
votes
3
replies
835
views
vcf file analysis
columns rsid vcf position
updated 2.7 years ago by 43k • written 2.7 years ago by ▴ 140
0
votes
1
reply
861
views
bed to vcf
liftover vcf bed
updated 2.7 years ago by ▴ 830 • written 2.7 years ago by ▴ 140
3
votes
2
replies
634
views
column modifications related to SNP
modify snp vcf
2.7 years ago by rheab1230 ▴ 140
2
votes
3
replies
1.5k
views
genome browser to check SNP genome build
build snp vcf genome
updated 2.7 years ago by ★ 3.8k • written 2.7 years ago by ▴ 140
0
votes
5
replies
1.2k
views
Inquiry related to vcf file and formatting
vcf bcftools
updated 13 months ago by 43k • written 2.7 years ago by ▴ 140
0
votes
6
replies
1.7k
views
Allele frequency calculation
AF VCF snp calc
updated 2.7 years ago by ▴ 480 • written 2.7 years ago by ▴ 140
4
votes
4
replies
6.0k
views
plot-vcfstats
bcftools snp vcf stats
2.7 years ago by rheab1230 ▴ 140
1
vote
7
replies
2.6k
views
vcf file summary
vcf summary statistics SNP
updated 2.7 years ago by ▴ 300 • written 2.7 years ago by ▴ 140
0
votes
19
replies
2.8k
views
error related to vcfstats
numpy snp vcf vcfstats
2.7 years ago by rheab1230 ▴ 140
3
votes
36
replies
5.1k
views
inquiry related to snpsift
rsid snp vcf
updated 2.8 years ago by 87k • written 2.8 years ago by ▴ 140
0
votes
3
replies
1.5k
views
error related to SnpSift
rsid SnpSift SNP
updated 6 months ago by • 0 • written 2.8 years ago by ▴ 140
0
votes
2
replies
737
views
inquiry related to rsid
TWAS vcf rsid predixcan
updated 13 months ago by 43k • written 2.8 years ago by ▴ 140
1
vote
17
replies
3.5k
views
SNP filtering
vcf SNP
updated 13 months ago by 43k • written 2.8 years ago by ▴ 140
0
votes
3
replies
1.4k
views
error related to annovar software
rsid annovar VCF SNP
2.8 years ago by rheab1230 ▴ 140
0
votes
0
replies
450
views
error related to predixcan
PrediXcan TWAS MetaXcan SNP
2.8 years ago by rheab1230 ▴ 140
0
votes
0
replies
565
views
error related to MetaXcan
PrediXcan TWAS MetaXcan SNP
2.8 years ago by rheab1230 ▴ 140
0
votes
5
replies
1.2k
views
error related to MetaXcan
PrediXcan TWAS MetaXcan SNP
updated 2.8 years ago by 21k • written 2.8 years ago by ▴ 140
0
votes
14
replies
1.9k
views
error relate to R
TWAS SNP R
updated 2.8 years ago by 87k • written 2.8 years ago by ▴ 140
1
vote
8
replies
2.1k
views
slurm error
TWAS slurm
2.8 years ago by rheab1230 ▴ 140
0
votes
2
replies
839
views
TWAS analysis
TWAS predixscan
3.0 years ago by rheab1230 ▴ 140
0
votes
2
replies
904
views
DESEQ2
featurecount DeSeq2
3.0 years ago by rheab1230 ▴ 140
0
votes
4
replies
913
views
Transcription factor
RNA-seq analysis
3.0 years ago by rheab1230 ▴ 140
0
votes
3
replies
762
views
Rna seq analysis
factors transcription motif
3.0 years ago by rheab1230 ▴ 140
101 results • Page 2 of 3
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