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comments
0
votes
0
replies
4.1k
views
Comment:
Comment: 2021: state and usage of compressed file standards better than BAM and FASTQ
2.6 years ago by
quentin54520
▴ 120
10
votes
11
replies
5.3k
views
6 follow
Read bam/cram file with IGV from aws s3
s3
IGV
aws
amazon
2.6 years ago by
quentin54520
▴ 120
2
votes
0
replies
5.3k
views
Answer:
Answer: Read bam/cram file with IGV from aws s3
2.6 years ago by
quentin54520
▴ 120
0
votes
1
reply
509
views
Tools for rare variant burden analysis
variant-burden
updated 20 months ago by
Ram
44k • written 2.8 years ago by
quentin54520
▴ 120
0
votes
1
reply
2.4k
views
Comment:
Comment: Annotations vep : keep high impact in any transcript + canonical
2.8 years ago by
quentin54520
▴ 120
5
votes
7
replies
2.4k
views
Annotations vep : keep high impact in any transcript + canonical
annotations
Vep
ensembl
updated 2.8 years ago by
Ram
44k • written 2.8 years ago by
quentin54520
▴ 120
0
votes
1
reply
559
views
Vcf stat about consequences
Vcf
vep
statistic
updated 2.9 years ago by
Kevin Blighe
89k • written 2.9 years ago by
quentin54520
▴ 120
4
votes
7
replies
1.5k
views
Vcf : remove variant absent in affected sample
Vcf
updated 2.9 years ago by
sbstevenlee
▴ 480 • written 2.9 years ago by
quentin54520
▴ 120
0
votes
0
replies
1.5k
views
Comment:
Comment: Vcf : remove variant absent in affected sample
2.9 years ago by
quentin54520
▴ 120
0
votes
1
reply
1.5k
views
Comment:
Comment: Vcf : remove variant absent in affected sample
2.9 years ago by
quentin54520
▴ 120
0
votes
1
reply
1.5k
views
Comment:
Comment: Vcf : remove variant absent in affected sample
2.9 years ago by
quentin54520
▴ 120
0
votes
0
replies
793
views
Comment:
Comment: Ensembl VEP on aws
2.9 years ago by
quentin54520
▴ 120
0
votes
2
replies
793
views
Ensembl VEP on aws
Vep
aws
ensembl
2.9 years ago by
quentin54520
▴ 120
0
votes
1
reply
561
views
RNA-seq alignment in 2 pass mode
RNA-seq
alignment
2-PASS
updated 2.9 years ago by
brunobsouzaa
▴ 840 • written 2.9 years ago by
quentin54520
▴ 120
1
vote
5
replies
2.1k
views
Samtools on arm / aws
Samtools
arm
aws
updated 3.0 years ago by
aw7
▴ 350 • written 3.0 years ago by
quentin54520
▴ 120
1
vote
1
reply
892
views
Dragen joint genotyping
genotyping
Dragen
joint-genotyping
wgs
updated 2.4 years ago by
Jeremy Leipzig
23k • written 3.0 years ago by
quentin54520
▴ 120
0
votes
0
replies
5.3k
views
Comment:
Comment: Read bam/cram file with IGV from aws s3
3.0 years ago by
quentin54520
▴ 120
0
votes
1
reply
5.3k
views
Comment:
Comment: Read bam/cram file with IGV from aws s3
3.0 years ago by
quentin54520
▴ 120
0
votes
1
reply
5.3k
views
Comment:
Comment: Read bam/cram file with IGV from aws s3
3.0 years ago by
quentin54520
▴ 120
0
votes
1
reply
5.3k
views
Comment:
Comment: Read bam/cram file with IGV from aws s3
3.1 years ago by
quentin54520
▴ 120
1
vote
1
reply
931
views
Basespace illumina how to use ?
wgs
Basespace
illumina
updated 3.1 years ago by
GenoMax
149k • written 3.1 years ago by
quentin54520
▴ 120
1
vote
4
replies
2.3k
views
Dragen-gatk for trio
Gatk
germline
dragen
updated 3.1 years ago by
cpad0112
21k • written 3.2 years ago by
quentin54520
▴ 120
0
votes
0
replies
2.3k
views
Answer:
Answer: Dragen-gatk for trio
3.1 years ago by
quentin54520
▴ 120
0
votes
0
replies
674
views
Gatk pipeline wdl on multiples sample input
Gatk
germline
3.2 years ago by
quentin54520
▴ 120
1
vote
1
reply
1.1k
views
Vep : MNP phased genotype
mnp
Vep
phased
updated 3.3 years ago by
Ben Moore
★ 2.4k • written 3.4 years ago by
quentin54520
▴ 120
0
votes
0
replies
2.4k
views
Comment:
Comment: Alamut batch vs free annotation tools like VEP
3.4 years ago by
quentin54520
▴ 120
1
vote
1
reply
3.2k
views
Answer:
Answer: Ensembl vep singularity
3.4 years ago by
quentin54520
▴ 120
0
votes
3
replies
2.4k
views
Alamut batch vs free annotation tools like VEP
genome
updated 2.3 years ago by
ED
• 0 • written 3.9 years ago by
quentin54520
▴ 120
0
votes
0
replies
3.2k
views
Comment:
Comment: Ensembl vep singularity
3.4 years ago by
quentin54520
▴ 120
0
votes
1
reply
3.2k
views
Comment:
Comment: Ensembl vep singularity
3.4 years ago by
quentin54520
▴ 120
1
vote
7
replies
3.2k
views
Ensembl vep singularity
vep
ensembl
Singularity
updated 20 months ago by
Ben Moore
★ 2.4k • written 3.4 years ago by
quentin54520
▴ 120
0
votes
1
reply
1.4k
views
Comment:
Comment: Dragen-gatk pipeline information ?
3.4 years ago by
quentin54520
▴ 120
0
votes
3
replies
1.4k
views
Dragen-gatk pipeline information ?
germline
gatk
dragen
wgs
updated 3.4 years ago by
German.M.Demidov
★ 2.9k • written 3.4 years ago by
quentin54520
▴ 120
0
votes
0
replies
1.6k
views
Comment:
Comment: MarkduplicatesSpark How to speed-up ?
3.5 years ago by
quentin54520
▴ 120
0
votes
0
replies
1.6k
views
Comment:
Comment: MarkduplicatesSpark How to speed-up ?
3.5 years ago by
quentin54520
▴ 120
0
votes
3
replies
1.6k
views
MarkduplicatesSpark How to speed-up ?
spark
gatk
genome
3.5 years ago by
quentin54520
▴ 120
1
vote
1
reply
842
views
GATK VQSR for human WGS
WGS
alignment
genome
updated 3.5 years ago by
samuelandjw
▴ 270 • written 3.6 years ago by
quentin54520
▴ 120
0
votes
0
replies
469
views
Germline calling with differents sample source
WGS
alignment
genome
3.6 years ago by
quentin54520
▴ 120
0
votes
0
replies
1.3k
views
Comment:
Comment: Filter bam file AND header
3.6 years ago by
quentin54520
▴ 120
0
votes
1
reply
1.3k
views
Comment:
Comment: Filter bam file AND header
3.6 years ago by
quentin54520
▴ 120
1
vote
4
replies
1.3k
views
Filter bam file AND header
filter
header
BAM
3.6 years ago by
quentin54520
▴ 120
0
votes
1
reply
958
views
Comment:
Comment: Ngs : how check if two samples come frome the same family?
3.6 years ago by
quentin54520
▴ 120
3
votes
3
replies
958
views
Ngs : how check if two samples come frome the same family?
exome
family
Genome
updated 3.6 years ago by
ATpoint
86k • written 3.6 years ago by
quentin54520
▴ 120
0
votes
0
replies
1.4k
views
Comment:
Comment: gVCF size human genome
3.6 years ago by
quentin54520
▴ 120
3
votes
2
replies
1.4k
views
gVCF size human genome
variant
Gatk
gvcf
3.6 years ago by
quentin54520
▴ 120
0
votes
0
replies
979
views
HaplotypeCaller run time ?
WGS
Haplotypecaller
GATK
3.7 years ago by
quentin54520
▴ 120
0
votes
1
reply
2.3k
views
Comment:
Comment: HaplotypeCallerSpark
3.9 years ago by
quentin54520
▴ 120
1
vote
4
replies
2.3k
views
HaplotypeCallerSpark
Variant
gatk
haplotypecaller
updated 2.9 years ago by
Mansi
• 0 • written 3.9 years ago by
quentin54520
▴ 120
0
votes
0
replies
884
views
SAM: why NM and MD tag are changed by the picard tool SetNmMdandUqtag ?
alignment
gatk
sam
3.9 years ago by
quentin54520
▴ 120
0
votes
0
replies
907
views
Should i calculated Nm, UQ and MD tag of bam ?
alignment
bam
gatk
3.9 years ago by
quentin54520
▴ 120
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