Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
5.4k
views
Comment: Comment: 2021: state and usage of compressed file standards better than BAM and FASTQ
3.4 years ago by quentin54520 ▴ 120
10
votes
11
replies
7.0k
views
6 follow
Read bam/cram file with IGV from aws s3
s3 IGV aws amazon
3.4 years ago by quentin54520 ▴ 120
2
votes
0
replies
7.0k
views
Answer: Answer: Read bam/cram file with IGV from aws s3
3.4 years ago by quentin54520 ▴ 120
0
votes
1
reply
647
views
Tools for rare variant burden analysis
variant-burden
updated 2.4 years ago by 45k • written 3.6 years ago by ▴ 120
0
votes
1
reply
3.7k
views
Comment: Comment: Annotations vep : keep high impact in any transcript + canonical
3.6 years ago by quentin54520 ▴ 120
5
votes
7
replies
3.7k
views
Annotations vep : keep high impact in any transcript + canonical
annotations Vep ensembl
updated 3.6 years ago by 45k • written 3.6 years ago by ▴ 120
0
votes
1
reply
774
views
Vcf stat about consequences
Vcf vep statistic
updated 3.7 years ago by ★ 90k • written 3.7 years ago by ▴ 120
4
votes
7
replies
2.1k
views
Vcf : remove variant absent in affected sample
Vcf
updated 3.7 years ago by ▴ 480 • written 3.7 years ago by ▴ 120
0
votes
0
replies
2.1k
views
Comment: Comment: Vcf : remove variant absent in affected sample
3.7 years ago by quentin54520 ▴ 120
0
votes
1
reply
2.1k
views
Comment: Comment: Vcf : remove variant absent in affected sample
3.7 years ago by quentin54520 ▴ 120
0
votes
1
reply
2.1k
views
Comment: Comment: Vcf : remove variant absent in affected sample
3.7 years ago by quentin54520 ▴ 120
0
votes
0
replies
1.0k
views
Comment: Comment: Ensembl VEP on aws
3.7 years ago by quentin54520 ▴ 120
0
votes
2
replies
1.0k
views
Ensembl VEP on aws
Vep aws ensembl
3.7 years ago by quentin54520 ▴ 120
0
votes
1
reply
732
views
RNA-seq alignment in 2 pass mode
RNA-seq alignment 2-PASS
updated 3.7 years ago by ▴ 840 • written 3.7 years ago by ▴ 120
1
vote
5
replies
2.6k
views
Samtools on arm / aws
Samtools arm aws
updated 3.8 years ago by ▴ 390 • written 3.8 years ago by ▴ 120
1
vote
1
reply
1.1k
views
Dragen joint genotyping
genotyping Dragen joint-genotyping wgs
updated 3.2 years ago by 23k • written 3.8 years ago by ▴ 120
0
votes
0
replies
7.0k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
3.8 years ago by quentin54520 ▴ 120
0
votes
1
reply
7.0k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
3.8 years ago by quentin54520 ▴ 120
0
votes
1
reply
7.0k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
3.8 years ago by quentin54520 ▴ 120
0
votes
1
reply
7.0k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
3.8 years ago by quentin54520 ▴ 120
1
vote
1
reply
1.2k
views
Basespace illumina how to use ?
wgs Basespace illumina
updated 3.9 years ago by 154k • written 3.9 years ago by ▴ 120
1
vote
4
replies
3.2k
views
Dragen-gatk for trio
Gatk germline dragen
updated 3.9 years ago by 21k • written 3.9 years ago by ▴ 120
0
votes
0
replies
3.2k
views
Answer: Answer: Dragen-gatk for trio
3.9 years ago by quentin54520 ▴ 120
0
votes
0
replies
851
views
Gatk pipeline wdl on multiples sample input
Gatk germline
4.0 years ago by quentin54520 ▴ 120
1
vote
1
reply
1.5k
views
Vep : MNP phased genotype
mnp Vep phased
updated 4.1 years ago by ★ 2.4k • written 4.1 years ago by ▴ 120
0
votes
0
replies
2.9k
views
Comment: Comment: Alamut batch vs free annotation tools like VEP
4.2 years ago by quentin54520 ▴ 120
1
vote
1
reply
4.0k
views
Answer: Answer: Ensembl vep singularity
4.2 years ago by quentin54520 ▴ 120
0
votes
3
replies
2.9k
views
Alamut batch vs free annotation tools like VEP
genome
updated 3.1 years ago by • 0 • written 4.7 years ago by ▴ 120
0
votes
0
replies
4.0k
views
Comment: Comment: Ensembl vep singularity
4.2 years ago by quentin54520 ▴ 120
0
votes
1
reply
4.0k
views
Comment: Comment: Ensembl vep singularity
4.2 years ago by quentin54520 ▴ 120
1
vote
7
replies
4.0k
views
Ensembl vep singularity
vep ensembl Singularity
updated 2.5 years ago by ★ 2.4k • written 4.2 years ago by ▴ 120
0
votes
1
reply
1.8k
views
Comment: Comment: Dragen-gatk pipeline information ?
4.2 years ago by quentin54520 ▴ 120
0
votes
3
replies
1.8k
views
Dragen-gatk pipeline information ?
germline gatk dragen wgs
updated 4.2 years ago by ★ 3.0k • written 4.2 years ago by ▴ 120
0
votes
0
replies
2.0k
views
Comment: Comment: MarkduplicatesSpark How to speed-up ?
4.3 years ago by quentin54520 ▴ 120
0
votes
0
replies
2.0k
views
Comment: Comment: MarkduplicatesSpark How to speed-up ?
4.3 years ago by quentin54520 ▴ 120
0
votes
3
replies
2.0k
views
MarkduplicatesSpark How to speed-up ?
spark gatk genome
4.3 years ago by quentin54520 ▴ 120
1
vote
1
reply
1.1k
views
GATK VQSR for human WGS
WGS alignment genome
updated 4.3 years ago by ▴ 270 • written 4.3 years ago by ▴ 120
0
votes
0
replies
570
views
Germline calling with differents sample source
WGS alignment genome
4.3 years ago by quentin54520 ▴ 120
0
votes
0
replies
1.7k
views
Comment: Comment: Filter bam file AND header
4.4 years ago by quentin54520 ▴ 120
0
votes
1
reply
1.7k
views
Comment: Comment: Filter bam file AND header
4.4 years ago by quentin54520 ▴ 120
1
vote
4
replies
1.7k
views
Filter bam file AND header
filter header BAM
4.4 years ago by quentin54520 ▴ 120
0
votes
1
reply
1.3k
views
Comment: Comment: Ngs : how check if two samples come frome the same family?
4.4 years ago by quentin54520 ▴ 120
3
votes
3
replies
1.3k
views
Ngs : how check if two samples come frome the same family?
exome family Genome
updated 4.4 years ago by 90k • written 4.4 years ago by ▴ 120
0
votes
0
replies
1.7k
views
Comment: Comment: gVCF size human genome
4.4 years ago by quentin54520 ▴ 120
3
votes
2
replies
1.7k
views
gVCF size human genome
variant Gatk gvcf
4.4 years ago by quentin54520 ▴ 120
0
votes
0
replies
1.2k
views
HaplotypeCaller run time ?
WGS Haplotypecaller GATK
4.5 years ago by quentin54520 ▴ 120
0
votes
1
reply
2.7k
views
Comment: Comment: HaplotypeCallerSpark
4.6 years ago by quentin54520 ▴ 120
1
vote
4
replies
2.7k
views
HaplotypeCallerSpark
Variant gatk haplotypecaller
updated 3.7 years ago by • 0 • written 4.6 years ago by ▴ 120
0
votes
0
replies
1.1k
views
SAM: why NM and MD tag are changed by the picard tool SetNmMdandUqtag ?
alignment gatk sam
4.7 years ago by quentin54520 ▴ 120
0
votes
0
replies
1.1k
views
Should i calculated Nm, UQ and MD tag of bam ?
alignment bam gatk
4.7 years ago by quentin54520 ▴ 120
75 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6