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3.4k
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Comment: Comment: 2021: state and usage of compressed file standards better than BAM and FASTQ
21 months ago by quentin54520 ▴ 120
10
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11
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3.8k
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6 follow
Read bam/cram file with IGV from aws s3
s3 IGV aws amazon
22 months ago by quentin54520 ▴ 120
2
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0
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3.8k
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Answer: Answer: Read bam/cram file with IGV from aws s3
22 months ago by quentin54520 ▴ 120
0
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1
reply
405
views
Tools for rare variant burden analysis
variant-burden
updated 10 months ago by 43k • written 2.0 years ago by ▴ 120
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1
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1.6k
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Comment: Comment: Annotations vep : keep high impact in any transcript + canonical
2.1 years ago by quentin54520 ▴ 120
5
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7
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1.6k
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Annotations vep : keep high impact in any transcript + canonical
annotations Vep ensembl
updated 2.1 years ago by 43k • written 2.1 years ago by ▴ 120
0
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1
reply
425
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Vcf stat about consequences
Vcf vep statistic
updated 2.1 years ago by 87k • written 2.1 years ago by ▴ 120
4
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7
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1.1k
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Vcf : remove variant absent in affected sample
Vcf
updated 2.1 years ago by ▴ 480 • written 2.1 years ago by ▴ 120
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0
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1.1k
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Comment: Comment: Vcf : remove variant absent in affected sample
2.1 years ago by quentin54520 ▴ 120
0
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1
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1.1k
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Comment: Comment: Vcf : remove variant absent in affected sample
2.1 years ago by quentin54520 ▴ 120
0
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1
reply
1.1k
views
Comment: Comment: Vcf : remove variant absent in affected sample
2.1 years ago by quentin54520 ▴ 120
0
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0
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610
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Comment: Comment: Ensembl VEP on aws
2.1 years ago by quentin54520 ▴ 120
0
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2
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610
views
Ensembl VEP on aws
Vep aws ensembl
2.1 years ago by quentin54520 ▴ 120
0
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1
reply
452
views
RNA-seq alignment in 2 pass mode
RNA-seq alignment 2-PASS
updated 2.1 years ago by ▴ 830 • written 2.1 years ago by ▴ 120
1
vote
5
replies
1.6k
views
Samtools on arm / aws
Samtools arm aws
updated 2.2 years ago by ▴ 270 • written 2.2 years ago by ▴ 120
1
vote
1
reply
712
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Dragen joint genotyping
genotyping Dragen joint-genotyping wgs
updated 19 months ago by 22k • written 2.2 years ago by ▴ 120
0
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0
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3.8k
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Comment: Comment: Read bam/cram file with IGV from aws s3
2.3 years ago by quentin54520 ▴ 120
0
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1
reply
3.8k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
2.3 years ago by quentin54520 ▴ 120
0
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1
reply
3.8k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
2.3 years ago by quentin54520 ▴ 120
0
votes
1
reply
3.8k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
2.3 years ago by quentin54520 ▴ 120
1
vote
1
reply
764
views
Basespace illumina how to use ?
wgs Basespace illumina
updated 2.3 years ago by 141k • written 2.3 years ago by ▴ 120
1
vote
4
replies
1.9k
views
Dragen-gatk for trio
Gatk germline dragen
updated 2.3 years ago by 21k • written 2.4 years ago by ▴ 120
0
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0
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1.9k
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Answer: Answer: Dragen-gatk for trio
2.3 years ago by quentin54520 ▴ 120
0
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0
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562
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Gatk pipeline wdl on multiples sample input
Gatk germline
2.4 years ago by quentin54520 ▴ 120
1
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1
reply
895
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Vep : MNP phased genotype
mnp Vep phased
updated 2.6 years ago by ★ 2.4k • written 2.6 years ago by ▴ 120
0
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0
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2.0k
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Comment: Comment: Alamut batch vs free annotation tools like VEP
2.6 years ago by quentin54520 ▴ 120
1
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1
reply
2.5k
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Answer: Answer: Ensembl vep singularity
2.6 years ago by quentin54520 ▴ 120
0
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3
replies
2.0k
views
Alamut batch vs free annotation tools like VEP
genome
updated 18 months ago by • 0 • written 3.2 years ago by ▴ 120
0
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0
replies
2.5k
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Comment: Comment: Ensembl vep singularity
2.6 years ago by quentin54520 ▴ 120
0
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1
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2.5k
views
Comment: Comment: Ensembl vep singularity
2.6 years ago by quentin54520 ▴ 120
1
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7
replies
2.5k
views
Ensembl vep singularity
vep ensembl Singularity
updated 10 months ago by ★ 2.4k • written 2.6 years ago by ▴ 120
0
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1
reply
1.2k
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Comment: Comment: Dragen-gatk pipeline information ?
2.6 years ago by quentin54520 ▴ 120
0
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3
replies
1.2k
views
Dragen-gatk pipeline information ?
germline gatk dragen wgs
updated 2.6 years ago by ★ 2.9k • written 2.6 years ago by ▴ 120
0
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0
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1.3k
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Comment: Comment: MarkduplicatesSpark How to speed-up ?
2.7 years ago by quentin54520 ▴ 120
0
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0
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1.3k
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Comment: Comment: MarkduplicatesSpark How to speed-up ?
2.7 years ago by quentin54520 ▴ 120
0
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3
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1.3k
views
MarkduplicatesSpark How to speed-up ?
spark gatk genome
2.7 years ago by quentin54520 ▴ 120
1
vote
1
reply
697
views
GATK VQSR for human WGS
WGS alignment genome
updated 2.7 years ago by ▴ 250 • written 2.8 years ago by ▴ 120
0
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0
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392
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Germline calling with differents sample source
WGS alignment genome
2.8 years ago by quentin54520 ▴ 120
0
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0
replies
984
views
Comment: Comment: Filter bam file AND header
2.8 years ago by quentin54520 ▴ 120
0
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1
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984
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Comment: Comment: Filter bam file AND header
2.8 years ago by quentin54520 ▴ 120
1
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4
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984
views
Filter bam file AND header
filter header BAM
2.8 years ago by quentin54520 ▴ 120
0
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1
reply
797
views
Comment: Comment: Ngs : how check if two samples come frome the same family?
2.8 years ago by quentin54520 ▴ 120
3
votes
3
replies
797
views
Ngs : how check if two samples come frome the same family?
exome family Genome
updated 2.8 years ago by 82k • written 2.8 years ago by ▴ 120
0
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0
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1.1k
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Comment: Comment: gVCF size human genome
2.8 years ago by quentin54520 ▴ 120
3
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2
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1.1k
views
gVCF size human genome
variant Gatk gvcf
2.8 years ago by quentin54520 ▴ 120
0
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0
replies
883
views
HaplotypeCaller run time ?
WGS Haplotypecaller GATK
2.9 years ago by quentin54520 ▴ 120
0
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1
reply
2.0k
views
Comment: Comment: HaplotypeCallerSpark
3.1 years ago by quentin54520 ▴ 120
1
vote
4
replies
2.0k
views
HaplotypeCallerSpark
Variant gatk haplotypecaller
updated 2.1 years ago by • 0 • written 3.1 years ago by ▴ 120
0
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0
replies
759
views
SAM: why NM and MD tag are changed by the picard tool SetNmMdandUqtag ?
alignment gatk sam
3.1 years ago by quentin54520 ▴ 120
0
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0
replies
779
views
Should i calculated Nm, UQ and MD tag of bam ?
alignment bam gatk
3.1 years ago by quentin54520 ▴ 120
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