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Showing :
questions
2
votes
0
replies
221
views
What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
20 days ago by
Alexander
▴ 220
5
votes
2
replies
2.9k
views
Biopython error: "ModuleNotFoundError: No module named 'Bio.SubsMat'"
biopython
updated 5 months ago by
IkramInf
▴ 20 • written 12 months ago by
Alexander
▴ 220
2
votes
2
replies
791
views
How does ncbi-blastP calculate the score ? (Why it is lower than mean-diagonal(blossum62) * length ) ?
protein
alignment
10 months ago by
Alexander
▴ 220
0
votes
4
replies
942
views
What are recommended parameters for the local protein alignment ?
protein
alignment
11 months ago by
Alexander
▴ 220
2
votes
7
replies
1.4k
views
What is "pident" (percentage of identical matches) in the "Diamond" protein alignment ?
protein
alignment
updated 11 months ago by
LauferVA
4.2k • written 11 months ago by
Alexander
▴ 220
0
votes
0
replies
507
views
What controls splicing to switch from CD45RA to CD45RO isoforms ?
scRNA-seq
CD-genes
14 months ago by
Alexander
▴ 220
2
votes
1
reply
579
views
Understanding "drop-out" for scRNA-seq data
scRNA-seq
updated 14 months ago by
zdebruine
▴ 120 • written 14 months ago by
Alexander
▴ 220
5
votes
8
replies
1.7k
views
What kinase phosphorylates WNK2 at site s49 (and s45) ? And how to deal with chatGPT with such questions ?
chatGPT
phosphorylation
updated 15 months ago by
harold.smith.tarheel
★ 4.9k • written 15 months ago by
Alexander
▴ 220
3
votes
2
replies
672
views
Looking for list(s) of human genes which are differentially expressed between male and female (better for hematopoetic progenitor cells)
human
genes
updated 15 months ago by
ATpoint
82k • written 15 months ago by
Alexander
▴ 220
0
votes
1
reply
872
views
Biological reason for correlation of CD36 with S100A4 , S100A6
scRNA-seq
CD-genes
16 months ago by
Alexander
▴ 220
0
votes
1
reply
486
views
Any biological reason for correlation between CD115-CD88-CD71, and other correlations between CD** proteins ?
scRNA-seq
CD-genes
updated 19 months ago by
jv
★ 1.8k • written 19 months ago by
Alexander
▴ 220
0
votes
0
replies
322
views
Which genes (their RNA transcripts) may influence : CD** genes protein levels ?
scRNA-seq
CD-genes
19 months ago by
Alexander
▴ 220
5
votes
4
replies
913
views
Databases with Genes <-> Diseases relations
Cancer
Genes
updated 19 months ago by
cmdcolin
★ 3.8k • written 19 months ago by
Alexander
▴ 220
0
votes
0
replies
307
views
Interpretation for increase of counts of non-zero values in single cell ATAC-seq samples ?
ATAC-seq
scRNA-seq
19 months ago by
Alexander
▴ 220
1
vote
1
reply
617
views
What can we "see" with single cell ATAC-seq data ? (e.g. cell cycle - possible or not ? )
ATAC-seq
updated 19 months ago by
ATpoint
82k • written 19 months ago by
Alexander
▴ 220
3
votes
10
replies
1.5k
views
Ewing sarcoma "related" genes ?
ewing
sarcoma
updated 23 months ago by
LauferVA
4.2k • written 23 months ago by
Alexander
▴ 220
1
vote
2
replies
669
views
What is known about mechanisms which switch "fast" cell cycle for ESC to "normal" cell cycle for normal cells?
cellcycle
stemcells
24 months ago by
Alexander
▴ 220
6
votes
5
replies
2.5k
views
How to save to CSV file scRNA-seq datasets obtained by R-package "scRNAseq"
scRNA-seq
updated 2.0 years ago by
rpolicastro
13k • written 2.0 years ago by
Alexander
▴ 220
4
votes
2
replies
759
views
Searching for MCF10a cell line single cell RNA sequencing data
MCF10a
scRNA-seq
updated 2.0 years ago by
mmfansler
▴ 450 • written 2.0 years ago by
Alexander
▴ 220
1
vote
0
replies
526
views
How to get full list of ID-s of scRNA datasets in EBI Single Cell Expression Atlas ?
scanpy
scRNA-seq
written 2.2 years ago by
Alexander
▴ 220
0
votes
2
replies
1.8k
views
Installing R-packages without sudo rights
server
R
updated 2.3 years ago by
shiyang_bio
▴ 170 • written 2.3 years ago by
Alexander
▴ 220
0
votes
0
replies
1.3k
views
Is there infer CNV like python library which works for Python 3.7.1 (colab/kaggle) ? (Problem: infercnvpy - needs 3.8)
cnv
scRNA-seq
2.6 years ago by
Alexander
▴ 220
3
votes
2
replies
1.5k
views
How to interpret bimodal distribution of GC-content for RNAseq and can it be remedied ?
RNA-Seq
GCcontent
FastQC
RNAseq
updated 2.7 years ago by
GenoMax
142k • written 2.7 years ago by
Alexander
▴ 220
1
vote
4
replies
1.3k
views
Does scRNA-seq Tabula Sapiens store: counts or log2( 1+counts ) or most probably something else ?
scRNA-seq
scRNAseq
TabulaSapiens
2.8 years ago by
Alexander
▴ 220
6
votes
11
replies
2.7k
views
Python fast way to get ONLY MAIN metadata for GSE ? (not walking through thousands underlying GSM-samples : slow or even endless)
GEO
GEOparse
updated 2.8 years ago by
GenoMax
142k • written 2.8 years ago by
Alexander
▴ 220
2
votes
5
replies
1.1k
views
How to automatically distinguish single vs. bulk GEO datasets (in ARCHS4 collection or in general) ?
scRNAseq
2.8 years ago by
Alexander
▴ 220
2
votes
3
replies
868
views
Description (of at least top levels) of Gene Ontology hierarchy ?
GO
2.8 years ago by
Alexander
▴ 220
2
votes
0
replies
490
views
scRNA-seq datasets for different cell lines
scRNAseq
2.8 years ago by
Alexander
▴ 220
0
votes
0
replies
541
views
Visualization of the cell cycle for ESC (or iPSC) from scRNA-seq data
cell
cycle
ESC
2.9 years ago by
Alexander
▴ 220
1
vote
4
replies
1.0k
views
Looking for dataset with scRNA-seq data for normal (non cancer, non iPSCs) but prolifirating cells human (may be mouse or other )
RNA-seq
2.9 years ago by
Alexander
▴ 220
3
votes
2
replies
855
views
Is anticancer action of HDAC inhibitors - cancer cells specific or it may cause death to other cell types ?
cancer
updated 3.0 years ago by
Jean-Karim Heriche
27k • written 3.0 years ago by
Alexander
▴ 220
31 results • Page
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