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2
votes
0
replies
233
views
What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
4 weeks ago by Alexander ▴ 220
5
votes
2
replies
3.0k
views
Biopython error: "ModuleNotFoundError: No module named 'Bio.SubsMat'"
biopython
updated 6 months ago by ▴ 20 • written 12 months ago by ▴ 220
2
votes
2
replies
803
views
How does ncbi-blastP calculate the score ? (Why it is lower than mean-diagonal(blossum62) * length ) ?
protein alignment
11 months ago by Alexander ▴ 220
0
votes
4
replies
960
views
What are recommended parameters for the local protein alignment ?
protein alignment
11 months ago by Alexander ▴ 220
2
votes
7
replies
1.4k
views
What is "pident" (percentage of identical matches) in the "Diamond" protein alignment ?
protein alignment
updated 11 months ago by 4.2k • written 11 months ago by ▴ 220
0
votes
0
replies
516
views
What controls splicing to switch from CD45RA to CD45RO isoforms ?
scRNA-seq CD-genes
14 months ago by Alexander ▴ 220
2
votes
1
reply
593
views
Understanding "drop-out" for scRNA-seq data
scRNA-seq
updated 14 months ago by ▴ 120 • written 14 months ago by ▴ 220
5
votes
8
replies
1.7k
views
What kinase phosphorylates WNK2 at site s49 (and s45) ? And how to deal with chatGPT with such questions ?
chatGPT phosphorylation
updated 15 months ago by ★ 4.9k • written 16 months ago by ▴ 220
3
votes
2
replies
677
views
Looking for list(s) of human genes which are differentially expressed between male and female (better for hematopoetic progenitor cells)
human genes
updated 16 months ago by 82k • written 16 months ago by ▴ 220
0
votes
1
reply
879
views
Biological reason for correlation of CD36 with S100A4 , S100A6
scRNA-seq CD-genes
17 months ago by Alexander ▴ 220
0
votes
1
reply
491
views
Any biological reason for correlation between CD115-CD88-CD71, and other correlations between CD** proteins ?
scRNA-seq CD-genes
updated 19 months ago by ★ 1.8k • written 19 months ago by ▴ 220
0
votes
0
replies
323
views
Which genes (their RNA transcripts) may influence : CD** genes protein levels ?
scRNA-seq CD-genes
19 months ago by Alexander ▴ 220
5
votes
4
replies
919
views
Databases with Genes <-> Diseases relations
Cancer Genes
updated 19 months ago by ★ 3.8k • written 19 months ago by ▴ 220
0
votes
0
replies
311
views
Interpretation for increase of counts of non-zero values in single cell ATAC-seq samples ?
ATAC-seq scRNA-seq
20 months ago by Alexander ▴ 220
1
vote
1
reply
623
views
What can we "see" with single cell ATAC-seq data ? (e.g. cell cycle - possible or not ? )
ATAC-seq
updated 20 months ago by 82k • written 20 months ago by ▴ 220
3
votes
10
replies
1.6k
views
Ewing sarcoma "related" genes ?
ewing sarcoma
updated 23 months ago by 4.2k • written 23 months ago by ▴ 220
1
vote
2
replies
688
views
What is known about mechanisms which switch "fast" cell cycle for ESC to "normal" cell cycle for normal cells?
cellcycle stemcells
2.0 years ago by Alexander ▴ 220
6
votes
5
replies
2.5k
views
How to save to CSV file scRNA-seq datasets obtained by R-package "scRNAseq"
scRNA-seq
updated 2.0 years ago by 13k • written 2.0 years ago by ▴ 220
4
votes
2
replies
763
views
Searching for MCF10a cell line single cell RNA sequencing data
MCF10a scRNA-seq
updated 2.1 years ago by ▴ 450 • written 2.1 years ago by ▴ 220
1
vote
0
replies
530
views
How to get full list of ID-s of scRNA datasets in EBI Single Cell Expression Atlas ?
scanpy scRNA-seq
written 2.2 years ago by ▴ 220
0
votes
2
replies
1.8k
views
Installing R-packages without sudo rights
server R
updated 2.3 years ago by ▴ 170 • written 2.4 years ago by ▴ 220
0
votes
0
replies
1.3k
views
Is there infer CNV like python library which works for Python 3.7.1 (colab/kaggle) ? (Problem: infercnvpy - needs 3.8)
cnv scRNA-seq
2.6 years ago by Alexander ▴ 220
3
votes
2
replies
1.5k
views
How to interpret bimodal distribution of GC-content for RNAseq and can it be remedied ?
RNA-Seq GCcontent FastQC RNAseq
updated 2.8 years ago by 142k • written 2.8 years ago by ▴ 220
1
vote
4
replies
1.3k
views
Does scRNA-seq Tabula Sapiens store: counts or log2( 1+counts ) or most probably something else ?
scRNA-seq scRNAseq TabulaSapiens
2.8 years ago by Alexander ▴ 220
6
votes
11
replies
2.7k
views
Python fast way to get ONLY MAIN metadata for GSE ? (not walking through thousands underlying GSM-samples : slow or even endless)
GEO GEOparse
updated 2.8 years ago by 142k • written 2.8 years ago by ▴ 220
2
votes
5
replies
1.1k
views
How to automatically distinguish single vs. bulk GEO datasets (in ARCHS4 collection or in general) ?
scRNAseq
2.8 years ago by Alexander ▴ 220
2
votes
3
replies
875
views
Description (of at least top levels) of Gene Ontology hierarchy ?
GO
2.8 years ago by Alexander ▴ 220
2
votes
0
replies
494
views
scRNA-seq datasets for different cell lines
scRNAseq
2.9 years ago by Alexander ▴ 220
0
votes
0
replies
543
views
Visualization of the cell cycle for ESC (or iPSC) from scRNA-seq data
cell cycle ESC
2.9 years ago by Alexander ▴ 220
1
vote
4
replies
1.1k
views
Looking for dataset with scRNA-seq data for normal (non cancer, non iPSCs) but prolifirating cells human (may be mouse or other )
RNA-seq
2.9 years ago by Alexander ▴ 220
3
votes
2
replies
858
views
Is anticancer action of HDAC inhibitors - cancer cells specific or it may cause death to other cell types ?
cancer
updated 3.1 years ago by 27k • written 3.1 years ago by ▴ 220
31 results • Page 1 of 1
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