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625
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Comment:
Comment: What is the command line to map XLOC_ids from cufflinks with rice LOC_ids from m
11 months ago by
isha.lily20
▴ 10
1
vote
2
replies
625
views
What is the command line to map XLOC_ids from cufflinks with rice LOC_ids from msu
mapping
11 months ago by
isha.lily20
▴ 10
0
votes
0
replies
861
views
Comment:
Comment: How to find coordinates of TSS from 5pUTR and TTS from 3pUTR in transcriptome/ m
12 months ago by
isha.lily20
▴ 10
1
vote
2
replies
861
views
How to find coordinates of TSS from 5pUTR and TTS from 3pUTR in transcriptome/ mRNA ?
coordinates
12 months ago by
isha.lily20
▴ 10
3
votes
2
replies
1.0k
views
How to calculate/ extract co-ordinates of TSS and TTS from gtf file in excel ?
extract
TSS
gtf
calculate
TTS
updated 18 months ago by
i.sudbery
19k • written 18 months ago by
isha.lily20
▴ 10
1
vote
1
reply
450
views
How to find out TSS and TTS from rice transcriptome data ?
Transcriptome
TSS
TTS
Rice
updated 18 months ago by
LChart
3.9k • written 18 months ago by
isha.lily20
▴ 10
2
votes
2
replies
538
views
What are the Distribution in transcriptomes ?
Distribution
Transcriptomes
updated 18 months ago by
Michael
54k • written 18 months ago by
isha.lily20
▴ 10
0
votes
0
replies
491
views
How to extract promoter coordinates from transcriptome.gtf file generated after cuffmerge ? file only has exon in annotation
promoter
extract
coordinates
updated 23 months ago by
rpolicastro
13k • written 23 months ago by
isha.lily20
▴ 10
9
votes
6
replies
2.1k
views
how to fetch intron coordinates from transcriptome.gtf file ? is there any direct tool ?
intron
extract
coordinates
updated 23 months ago by
Michael
54k • written 23 months ago by
isha.lily20
▴ 10
0
votes
1
reply
2.1k
views
Comment:
Comment: how to fetch intron coordinates from transcriptome.gtf file ? is there any dir
23 months ago by
isha.lily20
▴ 10
2
votes
1
reply
575
views
how to find coordinates of 5prime and 3prime utr from transcriptome data generated after cuffmerge only contains exon in gtf
transcriptome
updated 23 months ago by
i.sudbery
19k • written 23 months ago by
isha.lily20
▴ 10
0
votes
2
replies
1.2k
views
Comment:
Comment: can i take promoter upstream 2kb from tss ?
24 months ago by
isha.lily20
▴ 10
4
votes
5
replies
1.2k
views
can i take promoter upstream 2kb from tss ?
upstream
promoter
2kb
tss
updated 23 months ago by
dthorbur
★ 1.9k • written 24 months ago by
isha.lily20
▴ 10
1
vote
1
reply
456
views
How to do transcriptome annotation through transcriptome annotation gtf file obtained after cuffllink ?
transcriptome
annotation
gtf
2.1 years ago by
isha.lily20
▴ 10
0
votes
0
replies
305
views
How to find out co-occurrence of motifs with tfbs ?
co-occurrence
tfbs
motifs
2.2 years ago by
isha.lily20
▴ 10
1
vote
1
reply
637
views
How to map query coordinates on to genome gff annotation files ?
mapping
annotation
gff
2.4 years ago by
isha.lily20
▴ 10
6
votes
4
replies
2.2k
views
How to extract promoter sequences from rice transcriptome.gtf file ?
gtf
updated 2.4 years ago by
Juke34
8.6k • written 2.5 years ago by
isha.lily20
▴ 10
1
vote
1
reply
1.1k
views
How to find/extract sequences of protein coding genes and Transposable elements from rice transciptome.gtf file ?
gtf
updated 2.5 years ago by
GenoMax
142k • written 2.5 years ago by
isha.lily20
▴ 10
0
votes
0
replies
1.7k
views
Comment:
Comment: Perl script on rna G quadruplex
2.8 years ago by
isha.lily20
▴ 10
0
votes
1
reply
1.7k
views
Comment:
Comment: Perl script on rna G quadruplex
updated 2.8 years ago by
Michael
54k • written 2.8 years ago by
isha.lily20
▴ 10
0
votes
1
reply
1.7k
views
Comment:
Comment: Perl script on rna G quadruplex
updated 2.8 years ago by
Michael
54k • written 2.8 years ago by
isha.lily20
▴ 10
6
votes
10
replies
1.7k
views
Perl script on rna G quadruplex
perl
G-quadruplex
rna
2.8 years ago by
isha.lily20
▴ 10
0
votes
1
reply
1.7k
views
Comment:
Comment: Perl script on rna G quadruplex
updated 2.8 years ago by
Michael
54k • written 2.8 years ago by
isha.lily20
▴ 10
0
votes
1
reply
1.4k
views
Comment:
Comment: GC content of specific regular expression
2.8 years ago by
isha.lily20
▴ 10
0
votes
1
reply
1.7k
views
Comment:
Comment: Perl script on rna G quadruplex
2.8 years ago by
isha.lily20
▴ 10
1
vote
1
reply
923
views
Comment:
Comment: orthology enrichment
2.8 years ago by
isha.lily20
▴ 10
0
votes
1
reply
1.4k
views
Comment:
Comment: GC content of specific regular expression
2.8 years ago by
isha.lily20
▴ 10
0
votes
1
reply
1.4k
views
Comment:
Comment: How to find out TFBS motifs within 5'-UTR sequences
2.8 years ago by
isha.lily20
▴ 10
0
votes
1
reply
1.4k
views
Comment:
Comment: How to find out TFBS motifs within 5'-UTR sequences
2.8 years ago by
isha.lily20
▴ 10
4
votes
6
replies
1.4k
views
How to find out TFBS motifs within 5'-UTR sequences
TFBSmotifs
5primeUTR
updated 2.8 years ago by
Alex Reynolds
35k • written 2.8 years ago by
isha.lily20
▴ 10
2
votes
8
replies
1.4k
views
GC content of specific regular expression
GC-content
updated 2.8 years ago by
Ram
43k • written 2.9 years ago by
isha.lily20
▴ 10
5
votes
4
replies
923
views
orthology enrichment
orthology
updated 2.8 years ago by
Ram
43k • written 2.9 years ago by
isha.lily20
▴ 10
0
votes
1
reply
9.0k
views
Comment:
Comment: Quadruplex sequence batch prediction
updated 15 months ago by
Ram
43k • written 2.9 years ago by
isha.lily20
▴ 10
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