0
votes
0
replies
9
views
0
votes
1
reply
30
views
0
votes
1
reply
182
views
0
votes
0
replies
32
views
0
votes
3
replies
170
views
0
votes
4
replies
142
views
0
votes
1
reply
66
views
updated 4 hours ago by
Ram
43k
•
written 7 hours ago by
Petchimuthu
•
0
3
votes
7
replies
157
views
0
votes
0
replies
33
views
5 hours ago by
Lluís R.
★
1.2k
4
votes
7
replies
470
views
4 hours ago by
e.r.zakiev
▴
200
0
votes
0
replies
42
views
0
votes
2
replies
80
views
updated 4 hours ago by
Mensur Dlakic
★
27k
•
written 5 hours ago by
alenew.am
•
0
0
votes
5
replies
281
views
0
votes
0
replies
64
views
0
votes
3
replies
109
views
0
votes
0
replies
37
views
3
votes
5
replies
171
views
0
votes
2
replies
93
views
6 hours ago by
Bosberg
▴
50
3
votes
0
replies
60
views
0
votes
1
reply
83
views
0
votes
1
reply
235
views
0
votes
0
replies
43
views
1
vote
4
replies
316
views
7 hours ago by
hagl
▴
10
0
votes
1
reply
86
views
updated 10 hours ago by
Mohamed Abderrahmane
▴
20
•
written 10 hours ago by
matteo.levorato
•
0
0
votes
2
replies
95
views
10 hours ago by
Lluís R.
★
1.2k
0
votes
1
reply
93
views
0
votes
0
replies
62
views
5
votes
16
replies
553
views
13 hours ago by
Ruqaiya
•
0
0
votes
2
replies
101
views
34
votes
22
replies
1.5k
views
10 follow
0
votes
0
replies
52
views
0
votes
0
replies
57
views
updated 8 hours ago by
GenoMax
141k
•
written 16 hours ago by
aliraza3119
•
0
0
votes
1
reply
86
views
2
votes
7
replies
1.2k
views
6 follow
updated 20 hours ago by
Gordon Smyth
★
7.1k
•
written 8 months ago by
Calum
▴
10
0
votes
1
reply
165
views
updated 12 hours ago by
christopher medway
▴
450
•
written 21 hours ago by
Tigran
•
0
2
votes
2
replies
153
views
0
votes
0
replies
82
views
11 hours ago by
carlopecoraro2
★
2.5k
0
votes
7
replies
299
views
0
votes
9
replies
2.5k
views
6 follow
2
votes
5
replies
409
views
1 day ago by
ashaneev07
▴
20
0
votes
1
reply
130
views
0
votes
1
reply
721
views
2
votes
2
replies
251
views
0
votes
0
replies
94
views
updated 5 hours ago by
dariober
14k
•
written 1 day ago by
rene.j.erhardt
▴
20
1
vote
3
replies
250
views
0
votes
0
replies
119
views
0
votes
0
replies
124
views
2 days ago by
Chris
▴
260
0
votes
1
reply
311
views
0
votes
2
replies
323
views
Recent Votes
Recent Locations •
All
Canada, 2 minutes ago
United States, 3 minutes ago
Palau, 4 minutes ago
United States, 4 minutes ago
United States, 5 minutes ago
rome, 6 minutes ago
United States, 6 minutes ago
Recent Awards •
All
Popular Question to
cwwong13
▴
40
Popular Question to
v.berriosfarias
▴
140
Popular Question to
scarey
•
0
Scholar to
e.r.zakiev
▴
200
Popular Question to
Bine
▴
60
Popular Question to
Deepak Tanwar
★
4.2k
Popular Question to
Chris
▴
260
Recent Replies
Comment: Landmark gene selection in L1000.
by
GenoMax
141k
Paper referred to in question: https://pubmed.ncbi.nlm.nih.gov/29195078/
> so I want to understand how you reduced the 12063 genes to 978…
Comment: Batch effects : ComBat or removebatcheffects (limma package) ?
by
cwwong13
▴
40
@kevin May I know whether your comments and edits were mainly based on the fact that "Previously, [crazy] people had been using the origina…
Comment: Programmatically retrieving positions of protein active site residues
by
Wayne
★
2.0k
Wow, I was shocked at this AI answer that looks to be a good start for using UniProt. Sharing it in case it is useful. (It will work in ses…
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴
570
> Can you clarify what you mean by "100% of reads pass cutadapt, even
> though 70% of reads contain adapters and get trimmed.
The header o…
Comment: Software to separate reads from different individuals
by
GenoMax
141k
If you have independent information available (e.g. genotype data for both individuals) then you *may* be able to assign reads based on the…
Answer: Extract protein sequence
by
Matthias Zepper
4.5k
You didn't mention what kind of organism you are working with and what kind of protein you are looking for?
If it happens to be a microbia…
Comment: How to use limma to find differentially expressed genes in response to a continu
by
pairedttest
▴
10
Thank you Gordon for your expertise. One question that I have now that I have a list of DE genes is how to interpret logFC of this continuo…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
salias
•
0
Yes I plan to use QIIME2, but I'm Cutadapting outside QIIME so its easier to MultiQC without importing/unzipping QZAs (and QIIME2 importing…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
GenoMax
141k
> 3' adapters were removed aprox. 90 times each one, so there sohuld not be read-through at all here
Then you have data that has poor Q sc…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
salias
•
0
Following your advice, I checked the primer and adapters sequences and edited the question accordingly
Comment: How should I make kallisto indexes?
by
dsull
★
5.9k
We can't phase them out per se, because ``kallisto index`` is still the engine responsible for creating the index under the hood (and there…
Comment: When to use .vcf or .gvcf files from GATK HaplotypeCaller?
by
Medhat
9.7k
"./." in your gVCF files typically indicates a lack of information or uncertainty about the genotype at that particular position.
This co…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
salias
•
0
Fungal ITS2 region (length is really variable so read-through can be an issue)
Answer: Is it possible to bulk download files from GEO repository?
by
noodle
▴
570
Also try the NCBI AWS bucket transfer tool. It's extremely convenient, however it's not instantaneous and you need to have a (paid) AWS acc…
Traffic: 2902 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6