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sorry, I have mistaken samtools with spades... running `samtools view -h...` did the trick. Thank you.
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If those logFCs are different, then that's a normalization issue.
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Thanks both for your input. It got me to look at the published methodologies more closely, and you guys were right. One paper that I was re…
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Yes it does not match at all, and those genes that are common in both analysis results have very different logFC and p values
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I am not sure what you mean by this, but I believe that is what I did. With Trinity, I matched all the paired reads together, so they shoul…
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