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1,000 results • Page
7 of 20
Sort: Rank
Rank
Views
Votes
Replies
1
vote
5
replies
362
views
Introduce SNPs on FASTA
simulation
snps
haplotypes
pharmacogenetics
11 days ago by
Riccardo
▴ 10
0
votes
0
replies
140
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 14 days ago by
Ram
43k • written 14 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
135
views
Somatic variant calling with Mutect2 using 2 matched-normals for one sample
cancer
mutect
variant-calling
GATK
somatic-variants
updated 14 days ago by
Ram
43k • written 14 days ago by
Alexandros
• 0
0
votes
1
reply
184
views
unable to get feature count results
featureCounts
updated 14 days ago by
Ram
43k • written 14 days ago by
Ravita
• 0
0
votes
3
replies
310
views
KEGG Pathways
r
RNA-seq
updated 14 days ago by
Ram
43k • written 14 days ago by
Sudip
• 0
4
votes
6
replies
3.9k
views
Taking the difference of two VCFs (or removing singletons)
genome
sequencing
singleton
SNP
filter
updated 14 days ago by
Andres
▴ 20 • written 9.6 years ago by
hermathena
▴ 40
0
votes
0
replies
147
views
Seurat object reductions (PCA, UMAP,..) after subsetting data
Seurat
14 days ago by
Bine
▴ 60
0
votes
1
reply
206
views
Deseq2
Deseq2
updated 15 days ago by
Jack Tierney
▴ 360 • written 15 days ago by
Sudip
• 0
1
vote
1
reply
260
views
Polishing genome assembly
polishing
Nanopore
PacBio
updated 15 days ago by
Michael
54k • written 15 days ago by
Lissa Cruz Saavedra
• 0
5
votes
3
replies
308
views
6 follow
Integrate transcriptomic data and proteomics data.
OMICS
updated 15 days ago by
Lluís R.
★ 1.2k • written 15 days ago by
이민경[학생](대학원 융합의과학과)
• 0
2
votes
2
replies
213
views
MA plot of shrunken fold change
MA-plot
Deseq2
updated 15 days ago by
ATpoint
82k • written 15 days ago by
Sudip
• 0
1
vote
2
replies
236
views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
Arabidopsis-thaliana
gtf
reference-genome
updated 14 days ago by
Ram
43k • written 15 days ago by
Ravita
• 0
3
votes
3
replies
257
views
Gene Specific coverage from WGS data
WGS
SARS-CoV2
updated 1 day ago by
Ram
43k • written 15 days ago by
Adyasha
• 0
0
votes
0
replies
120
views
human gut metagenome taxonomy profile table and KO profile table from big cohort
metagenome
gut
human
15 days ago by
fanglujing
▴ 60
0
votes
0
replies
142
views
Are some metagenomes too complex for MAGs?
metagenomics
metagenome
MAGs
assembly
15 days ago by
Jacob
• 0
0
votes
3
replies
761
views
Why cd-hit-est not work when sequence identity threshold<0.95?
genome
cluster
sequence
updated 15 days ago by
weidonglu
• 0 • written 21 months ago by
JZX
• 0
0
votes
4
replies
322
views
Perfom a Gene Ontology Analysis from GO terms txt file
RNA-Seq
GO
updated 15 days ago by
Ram
43k • written 15 days ago by
Hamtaro
▴ 50
0
votes
1
reply
193
views
Differential Accessibility
DiffBind
updated 15 days ago by
Ram
43k • written 15 days ago by
Shloka
• 0
0
votes
3
replies
313
views
Landmark gene selection in L1000.
L1000
landmark-gene
cmap
updated 14 days ago by
GenoMax
142k • written 15 days ago by
kim
• 0
3
votes
2
replies
410
views
Extract protein sequence
fasta
alignment
blast
14 days ago by
anna
▴ 20
3
votes
3
replies
350
views
Is it possible to bulk download files from GEO repository?
RNA-seq
Galaxy
Tanscriptomics
updated 15 days ago by
noodle
▴ 580 • written 16 days ago by
WUSCHEL
▴ 760
0
votes
1
reply
184
views
metagenomic virome quality assessment
viromics
metagenomics
updated 15 days ago by
Ram
43k • written 15 days ago by
Petchimuthu
• 0
3
votes
7
replies
390
views
FastQC Quality per tile and per sequence behaving strange after using Cutadapt
fastqc
cutadapt
illumina
tile
paired-end
15 days ago by
salias
• 0
0
votes
0
replies
135
views
Using limma in methylation EM-seq?
EM-seq
methylation
15 days ago by
Lluís R.
★ 1.2k
4
votes
7
replies
627
views
Very low RNA splicing rate for pulmonary AT2 cells
RNA-velocity
scVelo
scRNA-seq
splicing
15 days ago by
e.r.zakiev
▴ 210
0
votes
0
replies
131
views
Synteny analysis
bacterial
synteny
genome
updated 15 days ago by
GenoMax
142k • written 15 days ago by
Namil
• 0
0
votes
4
replies
290
views
Genbank File Format
gbkformat
15 days ago by
alenew.am
• 0
0
votes
5
replies
468
views
How should I make kallisto indexes?
kallisto
updated 15 days ago by
dsull
★ 6.0k • written 29 days ago by
bioinfo
▴ 150
0
votes
0
replies
259
views
Assist me in determining whether the analysis process using the limma package has been executed correctly
limma
ArrayExpress
DifferentialExpression
GEOquery
15 days ago by
SSSJec
• 0
0
votes
3
replies
242
views
Software to separate reads from different individuals
software
development
nanopore
updated 15 days ago by
GenoMax
142k • written 15 days ago by
njornet
▴ 20
0
votes
2
replies
327
views
How to update R on ubuntu
installation
update
R
apt-get
15 days ago by
Bosberg
▴ 50
4
votes
0
replies
152
views
Herald:
The Biostar Herald for Monday, April 29, 2024
herald
15 days ago by
Biostar
2.8k
1
vote
1
reply
163
views
Two references 1. genome 2. plasmid for bowtie2
WGS
BacterialGenomics
Alignment
updated 15 days ago by
GenoMax
142k • written 16 days ago by
Ruqaiya
• 0
0
votes
1
reply
289
views
Using Delly/Pindel/breakdancer for Identifying Transgene Insertion Sites in Mouse Genome
breakdancer
insertion
Pindel
variation
Delly
updated 15 days ago by
trausch
★ 1.9k • written 4 weeks ago by
zec018
• 0
0
votes
0
replies
121
views
LEfSe
LEfSe
15 days ago by
benkosta
• 0
0
votes
0
replies
97
views
How should I handle read counts derived from SGSeq when I want to build DEXSeqDataSet object
DEXSeq
DEXSeqDataSet
SGSeq
15 days ago by
Sara
▴ 30
1
vote
4
replies
435
views
Limma Analysis Agilent Microarray Data (GPL1708)
Microarray
Limma
Agilent
15 days ago by
hagl
▴ 10
0
votes
7
replies
408
views
RNAseq one control two conditions, shared and exclusive genes
conditions
RNAseq
multiple
Rstudio
updated 2 days ago by
Mohamed Abderrahmane
▴ 20 • written 15 days ago by
matteo.levorato
• 0
0
votes
2
replies
185
views
Longitudinal analysis of subpopulations: which approach is better?
differential-expression
DEG
model
15 days ago by
Lluís R.
★ 1.2k
0
votes
1
reply
160
views
How to solve DESeq2 Error in checkFullRank(modelMatrix)?
RNA-Seq
DESeq2
updated 15 days ago by
i.sudbery
19k • written 16 days ago by
DOBI
• 0
0
votes
0
replies
111
views
Comparing peptide sequences with MS/MS peptide data using MaxQuant
Transcriptomics
Mass-spectrometry
Proteins
updated 1 day ago by
Ram
43k • written 16 days ago by
atharvakarkare14
▴ 30
7
votes
16
replies
909
views
How many reads for WGS Sequencing?
WGS
Bacterial-Genomics
16 days ago by
Ruqaiya
• 0
0
votes
2
replies
226
views
What should I consider as FASTA for dataset?
PDB
FASTA
15 days ago by
Nafi
• 0
38
votes
24
replies
2.2k
views
10 follow
NGS forensics: how to know if data is fabricated
fastq
STAR
NGS
Illumina
updated 14 days ago by
i.sudbery
19k • written 17 days ago by
noodle
▴ 580
0
votes
0
replies
603
views
Differential accessibility using DiffBinf
diffbind
16 days ago by
Shloka
• 0
0
votes
0
replies
106
views
vg call vs vg surject
vg
variation
graphs
updated 15 days ago by
GenoMax
142k • written 16 days ago by
aliraza3119
• 0
2
votes
2
replies
230
views
Can I merge Hi-C fastq files from different lanes?
GenomeAssembly
BWA-MEM2
Hi-C
updated 15 days ago by
GenoMax
142k • written 16 days ago by
Winter
• 0
2
votes
7
replies
1.4k
views
6 follow
Differential Expression using Isoseq-supplemented reference transcriptome
RNA-Seq
Salmon
Isoseq
updated 16 days ago by
Gordon Smyth
★ 7.2k • written 8 months ago by
Calum
▴ 10
0
votes
1
reply
236
views
Finding batch and outlayers
Pca
updated 15 days ago by
christopher medway
▴ 460 • written 16 days ago by
Tigran
• 0
2
votes
2
replies
233
views
PDB related issue
rcsb
pdb
updated 16 days ago by
noodle
▴ 580 • written 16 days ago by
Nafi
• 0
1,000 results • Page
7 of 20
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I have one more question please. When reading the h5ad file at the very beginning, do I need to perform the usual scanpy normalization step…
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• 0
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by
schmince
• 0
Thanks, that was exactly what i needed
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• 0
Thank you! I will try searching for this more and see if it would fit my analysis purposes.
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it is not!!
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Thank you! I eventually used the information generated by three tools (samtools coverage+ mosdepth + NanoPlot).
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Thank you Sir! you are right my model is not very good. Do You know how I can improve the scores. Also I am able to color the structure by …
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Right I heard there is an issue since Perl v5.36. You may have better luck using conda. Or the best way is to use the container. Or downgra…
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pLDDT scores are stored in the so-called B-factor column in PDB files. Below the `File` ribbon select `Molecule Display` and click on `b-fa…
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Thank you so much
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