Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
21 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
16
views
Phasing VCF Files and Analyzing Reads with Multiple Variants
haplotypes
vcf
phasing
39 minutes ago by
HarperReed
• 0
0
votes
1
reply
24
views
genome assembly records not present in assembly_summary.txt
ncbi
bacteria
assembly
updated 40 minutes ago by
Joe
21k • written 1 hour ago by
sapuizait
▴ 10
1
vote
0
replies
31
views
Simulation of label-free bottom-up proteomics expression dataset
label-free
bottom-up
lc-ms
proteomics
3 hours ago by
KABILAN
▴ 50
0
votes
0
replies
34
views
Running Phylogenetic Analysis With NCBI Genome
population
genetics
phylogenetic
species
sequencing
3 hours ago by
SineWave
• 0
0
votes
0
replies
29
views
RNA-seq: full length gene
identification
gene
full
length
3 hours ago by
Nargis
• 0
0
votes
1
reply
59
views
what is the purpose of indexing the reference genome (Kallisto)
indexing
Kallisto
updated 1 hour ago by
ATpoint
82k • written 4 hours ago by
Aaliya
▴ 10
0
votes
3
replies
128
views
Create a new bed file with all pairwise combinations between two other bed files, based on bp distance
SNPs
BED
eqtl
bedtools
updated 2 hours ago by
Pierre Lindenbaum
161k • written 4 hours ago by
J
• 0
0
votes
0
replies
32
views
Haplotype Phased Assembly Contigs to Chromosome Annotations
Assembly
phased
Haplotype
Annotation
5 hours ago by
turcoa1
• 0
0
votes
0
replies
54
views
Designing single-stable RNA molecules
structure
RNA
12 hours ago by
Edna
• 0
0
votes
0
replies
63
views
How to visualize/predict the final transcript from Delly output?
WGS
DELLY
12 hours ago by
simplitia
▴ 130
0
votes
1
reply
100
views
Normalize scRNAseq data to housekeeping genes to compare several datasets
RNA-sequencing
housekeeping
Single-cell
normalization
updated 13 hours ago by
ATpoint
82k • written 14 hours ago by
AaronJaime
• 0
0
votes
0
replies
67
views
Is there a way to increase the automatic label text size in Cytoscape?
Cytoscape
16 hours ago by
avocado123
• 0
0
votes
0
replies
57
views
How to calculate correlation coefficient for chipseq?
chipseq
bigwigsummary
correlation
16 hours ago by
Emily
▴ 10
1
vote
0
replies
76
views
How to calculate reliable Ka/Ks or dN/dS ratio for genes of interest from VCF file
dnds
kaks
VCF
17 hours ago by
rohitsatyam102
▴ 850
0
votes
0
replies
61
views
how to read graph_test output of monocle 3
monocle3
17 hours ago by
synat.keam
▴ 100
0
votes
1
reply
391
views
GAPIT p-value significance threshold
GAPIT
p-value
GWAS
updated 18 hours ago by
ginellegrenier
• 0 • written 4 months ago by
Clayton
• 0
0
votes
2
replies
155
views
Highest variable features in single cell data
single-cell
updated 13 hours ago by
Ram
43k • written 1 day ago by
Kazo
• 0
0
votes
2
replies
168
views
PCA plot
DESeq2
PCAplot
updated 30 minutes ago by
ATpoint
82k • written 1 day ago by
Aaliya
▴ 10
0
votes
2
replies
203
views
Annovar using R package
Annovar
gnomAD
R
13 hours ago by
DKA
▴ 40
0
votes
5
replies
282
views
Is it possible to get a list of representative genomes from a past RefSeq release?
representative
ncbi
asembly
refseq
updated 20 hours ago by
GenoMax
141k • written 1 day ago by
Bertalan_Takacs
▴ 90
0
votes
11
replies
456
views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
STARSolo
scRNA-seq
STAR
snRNA-seq
MGI
9 hours ago by
atowns21
• 0
21 results • Page
1 of 1
Recent Votes
Simulation of label-free bottom-up proteomics expression dataset
How to normalize long-read RNA-seq data for comparison with short-reads
EdgeR analysis with CPM normalzed counts
Alternative splicing convention
cellular niches analysis with spatial transcriptome data in Seurat and Bioconductor
Answer: Seurat merge and batch correction
Comment: How to convert plink files to Hapmap Format
Recent Locations •
All
EMBL Heidelberg, Germany,
just now
Belgium, Brussels,
just now
Finland,
1 minute ago
United Kingdom,
1 minute ago
Germany,
2 minutes ago
USA,
3 minutes ago
Istanbul, Turkey,
4 minutes ago
Recent Awards •
All
Popular Question
to
sapuizait
▴ 10
Voter
to
analyst
▴ 30
Scholar
to
ATpoint
82k
Popular Question
to
zdiazmar
▴ 30
Popular Question
to
hkarakurt
▴ 180
Student
to
John Torcivia
▴ 70
Popular Question
to
bioinfo
▴ 150
Recent Replies
Comment: CDS vs cDNA vs transcript for mapping RNA-Seq reads
by
Antonio R. Franco
★ 5.1k
You cannot do it with Kallisto either. In fact, the indexation will fail in attempting to index a genome file
Comment: PCA plot
by
ATpoint
82k
What is your question? Add details and clarity. Ask a precise question and please avoid opening more questions on the same underlying issue…
Comment: genome assembly records not present in assembly_summary.txt
by
Joe
21k
If you have the accession numbers can you not use something like `eutils`?
Comment: what is the purpose of indexing the reference genome (Kallisto)
by
ATpoint
82k
For question 1: For question 1: Purpose of indexing a genome/transcriptome/book/anything: https://www.biostars.org/p/212594/ For question …
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> Next, I tried using bedtools window but in your original post you said > tried finding the intersection of these bed files using bedto…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
Lada
▴ 30
Thank you very much! I tried it out! This is a handy tool useful for many different applications, and in regards to my problem - although …
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
• 0
Thank you for replying Pierre. I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP awk 'B…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> using bcftools Show us what you tried
Answer: gvcf joint calling
by
Jeremy Leipzig
22k
> Hi, guys, there is a question about the genomic gVCF file. I wonder > that since gVCF contains the non-var block records, why after merge…
Comment: Missing protein (VEGF-A) in String db
by
shalespringer
• 0
Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
Comment: How to convert plink files to Hapmap Format
by
Sofia
• 0
These are the first lines of the output: (Please is it normal to have NA in the P value column ?) CHR …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
atowns21
• 0
So I used the barcodes that I created (combos of positions 1-10 and 11-20) and I obtained similar alignment stats as the paper I pulled the…
Comment: How to convert plink files to Hapmap Format
by
Sofia
• 0
Thank you so much, it actually worked!
Answer: Rare Disease Variant Pathway Analysis
by
LauferVA
4.2k
Hi @efc1e545 , First a caveat. the information we most need in order to help guide you to a successful conclusion is not provided in thi…
Answer: Sequence read length shorter than flow cell specification
by
swbarnes2
14k
The company probably had you share your run with someone who needed the extra bases. So you get the extra bases free. Just use them unle…
Traffic: 2956 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6