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328 results • Page
2 of 7
Sort: Votes
Rank
Views
Votes
Replies
1
vote
2
replies
1.8k
views
How can find LD between rows (SNPs) two by two?
linkage-Disequilibrium
genomics
R
updated 6 hours ago by
Ram
38k • written 7.1 years ago by
star
▴ 330
1
vote
1
reply
3.3k
views
How do I find cross-reactive species given two primers?
primer
blast
updated 41 minutes ago by
Ram
38k • written 7.8 years ago by
andytsaica
• 0
1
vote
0
replies
2.1k
views
How to split protein tandem domains fasta sequnces to multiple single sequences?
protein
redundancy
updated 4 days ago by
Ram
38k • written 8.1 years ago by
astrozheng
▴ 10
1
vote
7
replies
240
views
error bbduk
linux
bbduk
java
updated 6 days ago by
lieven.sterck
14k • written 6 days ago by
Kárita
• 0
1
vote
2
replies
598
views
how to download automatically complete genomes with biopython on ncbi
ncbi
biopython
updated 6 hours ago by
Ram
38k • written 22 months ago by
Debut
▴ 20
1
vote
1
reply
220
views
just one plot appears in the shiny application not all
plot
source
shiny
code
updated 1 day ago by
bkleiboeker
▴ 320 • written 2 days ago by
mrashad
▴ 60
1
vote
4
replies
343
views
Loading Traitdata file for WGCNA analysis
R
WGCNA
updated 5 hours ago by
Ram
38k • written 5 months ago by
priya.bmg
▴ 50
1
vote
1
reply
195
views
From where i can download the bed file of hg19 which contaning the corrdinates as well as gene name.
bed
updated 4 days ago by
Ram
38k • written 6 days ago by
Anisha
• 0
1
vote
7
replies
1.7k
views
Platypus variantcaller.c:16971 errpr
platypus
updated 1 day ago by
Ram
38k • written 4.2 years ago by
nuketbilgen
▴ 40
1
vote
1
reply
174
views
Problem in generating the BAM files using STAR
BAM
STAR
updated 1 day ago by
Ram
38k • written 6 months ago by
boomathi.91
• 0
1
vote
1
reply
477
views
How do I resemble measurements in an experimental system when simulating in r programming?
simulation
R
updated 6 hours ago by
Ram
38k • written 2.3 years ago by
bioinfonewbie
• 0
1
vote
2
replies
366
views
What's the reason and how to fix - Regression model summary - variable name is combined with a category character in R
interpretation
Model
GLM
Regression
Summary
LM
5 days ago by
ohtang7
▴ 30
1
vote
3
replies
5.2k
views
How to convert a .gbff to the .gbk using batch method (to do it computationally for several bacteria)
gbff
genome
gbk
updated 4 days ago by
Ram
38k • written 5.3 years ago by
natasha.sernova
★ 3.9k
1
vote
0
replies
1.6k
views
usng biomaRt to get gene homologs
D.melanogaster
homologs
C.elegans
updated 4 days ago by
Ram
38k • written 6.4 years ago by
jiwpark00
▴ 210
1
vote
7
replies
1.2k
views
miRDeep2.pl cannot recognize reference fasta file
mirdeep2
fasta
mirna
mirdeep2.pl
mirna-sequencing
updated 4 days ago by
Ram
38k • written 3.0 years ago by
realnewbie
▴ 30
1
vote
3
replies
347
views
DESeq2 code to perform DEG analysis
SEseq2
DEG
updated 4 days ago by
Ram
38k • written 22 days ago by
rupali
• 0
1
vote
5
replies
226
views
Plot heatmap using row_splitting but splitting should based on a column in dataset - ComplexHeatmap
R
row_split
ComplexHeatmap
updated 3 hours ago by
Trivas
▴ 630 • written 10 hours ago by
TJay
• 0
1
vote
0
replies
34
views
Creating sample groups from a combination of genes for survival analysis
Survival
just now by
krushnach80
★ 1.1k
1
vote
3
replies
1.5k
views
Merging individual .bed files?
bed
bam
samtools
bamtobed
updated 4 days ago by
Ram
38k • written 4.7 years ago by
genomics Newbie
▴ 60
1
vote
3
replies
237
views
How to extract/find the actual names of the gene_IDs if they are not fully presented in gtf.file, and link them to the Count.matrix
featureCounts
gtf
RNA-Seq
updated 1 day ago by
GenoMax
127k • written 1 day ago by
Pegasus
▴ 80
1
vote
1
reply
330
views
scRNA seq with seurat: how do I add a column to the metadata?
scRNA-seq
scRNA
updated 4 days ago by
Ram
38k • written 3 months ago by
cdeantoneo31
▴ 10
1
vote
8
replies
1.2k
views
Loading a pre-filtered loom file into pySCENIC
scRNA-seq
pySCENIC
loom
updated 2 hours ago by
Ram
38k • written 7 months ago by
Jacob
• 0
1
vote
3
replies
270
views
FeatureCounts >edgeR > GO
RNA-SEQ
updated 13 hours ago by
Basti
★ 1.4k • written 1 day ago by
Pegasus
▴ 80
1
vote
0
replies
148
views
I want to calculate if the sample has whole genome duplication event or not?
sequencing
wgs
5 days ago by
Hyper_Odin
▴ 280
1
vote
9
replies
2.6k
views
bam to fasta error using samtools
fasta
bam
updated 4 days ago by
Ram
38k • written 6.0 years ago by
christacaggiano
▴ 60
1
vote
2
replies
225
views
How much reads per cell for fusion detection with Nanopore ?
single-cell
fusion
nanopore
5 days ago by
Evan
▴ 170
1
vote
2
replies
447
views
CONECT part in the pdb file
python
pandas
pdb
updated 1 hour ago by
Ram
38k • written 11 months ago by
Elsaid
• 0
1
vote
1
reply
1.3k
views
Biology student new to genetic bioinformatics
genetics
updated 4 days ago by
Ram
38k • written 7.3 years ago by
bioinformatics_student
• 0
1
vote
4
replies
759
views
Method to classify given sample into subtype
Breast-Cancer
RNA-Seq
TCGA-BRCA
TCGA
updated 4 days ago by
Ram
38k • written 2.4 years ago by
im
• 0
1
vote
2
replies
937
views
How to convert multiple .vcf files into single .ped (PLINK compatible files)?
vcf
ped
PLINK
WGS
updated 4 days ago by
Ram
38k • written 17 months ago by
isml2688
• 0
1
vote
1
reply
204
views
What's the correct way to map to hg38 with alternative contigs?
NGS
bwa
updated 4 days ago by
ATpoint
70k • written 4 days ago by
Belanov
▴ 10
1
vote
1
reply
426
views
For loop to generate mean for each measurement by sex
R
updated 7 hours ago by
Ram
38k • written 2.3 years ago by
selplat21
▴ 20
1
vote
2
replies
232
views
Handling single-sample VCF after haplotypecaller
VCF
1 day ago by
Y.H.P
• 0
1
vote
3
replies
436
views
Hisat2 Script Help
hisat2
mapping
updated 4 days ago by
Ram
38k • written 8 months ago by
smithkthedale
▴ 10
1
vote
0
replies
206
views
Assembling a very large and repetitive insert
NGS
Assembly
c.elegans
updated 4 days ago by
Ram
38k • written 13 months ago by
mrtylerkennedy
▴ 10
1
vote
1
reply
529
views
How can I convert plink (.bed, .fam and .bim) fileset to .pgen file format?
pgan
plink
bed
updated 4 days ago by
Ram
38k • written 5 months ago by
Mahan
▴ 70
1
vote
1
reply
139
views
How to create GO Bar Plot using data obtained from DAVID Functional Enrichment Analysis?
Plot
DAVID
R
updated 13 hours ago by
Basti
★ 1.4k • written 14 hours ago by
Stefanus C.B.
• 0
1
vote
1
reply
451
views
How is the best way to filter a BED file to get specific exons from their gene ID
bed
updated 1 hour ago by
Ram
38k • written 10 months ago by
ManuelDB
▴ 30
1
vote
2
replies
863
views
fcGENE error during conversion from .ped to .gen
imputation
fcgene
updated 4 days ago by
Ram
38k • written 3.7 years ago by
pifferdavide
▴ 100
0
votes
0
replies
504
views
Error in genetics vcf file - !! Error (genfile::MalformedInputError): Source "file-path/data_chrxx.vcf.gz" is malformed on line 5145934..
vcf
genetics
updated 25 minutes ago by
Ram
38k • written 15 months ago by
Nance
• 0
0
votes
0
replies
48
views
Homer annotatePeaks for enrichment analysis
annotatePeaks
homer
DMR
methylation
9 hours ago by
Joana
• 0
0
votes
1
reply
276
views
exome targeted regions ensembl
bed
exome
updated 41 minutes ago by
Ram
38k • written 12 months ago by
mailard
▴ 10
0
votes
0
replies
454
views
How to plot heatmap for the matrix for the pairwise comparison of sequence similarity in python?
heatmap
python
distance-matrix
updated 25 minutes ago by
Ram
38k • written 15 months ago by
ramsha
• 0
0
votes
1
reply
133
views
mrbayes segmentation fault
mrbayes
segmentation
fault
updated 15 hours ago by
Mensur Dlakic
★ 23k • written 17 hours ago by
dgrace999
• 0
0
votes
0
replies
134
views
Fine mapping with GWAS
PAINTOR
GWAS
FINE-MAP
POST-GWAS
updated 1 day ago by
Nicolas Rosewick
10k • written 1 day ago by
Swati
• 0
0
votes
0
replies
449
views
ICA - Reconstruction Errors
ICA
Omics
ML
updated 4 days ago by
Ram
38k • written 19 months ago by
Esra
• 0
0
votes
7
replies
1.1k
views
Unable to convert from sam to bam file.
bam
sam
samtools
updated 30 minutes ago by
Ram
38k • written 14 months ago by
usef
• 0
0
votes
0
replies
67
views
Add HI:i:<n> tag to a BAM file
SAM
hisat2
STAR
tag
BAM
10 hours ago by
predeus
★ 1.8k
0
votes
0
replies
224
views
Tapestry scDNA-seq and translocations
scDNA-seq
H5
single-cell
MOSAIC
variant-calling
updated 1 hour ago by
Ram
38k • written 11 months ago by
jmnz22
• 0
0
votes
4
replies
1.3k
views
Is it possible for a cell cluster to not have cells of a certain condition?
seurat
updated 4 days ago by
Ram
38k • written 19 months ago by
benjigamer_713
• 0
328 results • Page
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