Limit : this week
all time today this week this month this year
93 results • Page 2 of 2
Sort: Votes
Rank Views Votes Replies
0
votes
0
replies
67
views
supervised admixture
supervised admixture
22 hours ago by RT ▴ 10
0
votes
0
replies
61
views
Krona Pie-chart taxanomy IDs were not found warning. Taxonomy Classification Metagenomics
Classification Metagenomics Krona Kraken2
19 hours ago by Aytaç • 0
0
votes
0
replies
49
views
Nomalization - TCGA, RNA-seq and Microarray
TCGA RNA-seq Nomalization Microarray
14 hours ago by jain72744 ▴ 10
0
votes
0
replies
48
views
Allele specific expression of imprinted gens from 10x scRNA-seq data
scrna-seq imprinted 10x genes
14 hours ago by singcell • 0
0
votes
0
replies
53
views
Trouble converting tfam and tped to map and ped files
plink ped tfam tped map
12 hours ago by Samantha • 0
0
votes
2
replies
103
views
LncRNA Nomenclature
ENST nomenclature lncrna GBB ENSG
12 hours ago by jain72744 ▴ 10
0
votes
1
reply
107
views
When should I use R-MarkDown over R-Script ?
r rscript rmarkdown
updated 10 hours ago by 82k • written 14 hours ago by ▴ 160
0
votes
1
reply
83
views
Microbial Signal Transduction Database
MiST
updated 10 hours ago by 11k • written 12 hours ago by • 0
0
votes
0
replies
48
views
input file in rmats
rmats
updated 10 hours ago by 11k • written 12 hours ago by • 0
0
votes
0
replies
69
views
How do I calculate SE or P value if I only have BETA
prscsx beta se pvalue
updated 10 hours ago by 11k • written 21 hours ago by • 0
0
votes
0
replies
51
views
How to convert Haps file to vcf file?
pre-phasing GWAS imputation
9 hours ago by SeoGyun • 0
0
votes
3
replies
201
views
Correlation Analysis
statistics methylation NGS expression
updated 9 hours ago by ▴ 510 • written 3 days ago by ▴ 30
0
votes
0
replies
50
views
How are score_weights calculated in this code?
cell single
8 hours ago by carolofharvest ▴ 40
0
votes
1
reply
56
views
Alignment of samples with spike-in
alignment multimapping RNA-seq ChIP-seq spike-in
updated 7 hours ago by 142k • written 7 hours ago by • 0
0
votes
0
replies
35
views
Marker Features variance by cluster, sample, and treatment group
Seurat scATAC-seq features Marker ArchR
4 hours ago by naomiboldon • 0
0
votes
3
replies
91
views
How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
gatk vcf converter liftover
updated 4 hours ago by ▴ 390 • written 5 hours ago by ▴ 260
0
votes
5
replies
144
views
Too many unpaired forward reads found by Trimmomatic
Trimmomatic
2 hours ago by SilhouetteQ • 0
0
votes
0
replies
17
views
Practical Haplotype Graph v2 not finding correct paths
Pangenome PHG graph
1 hour ago by beantkapoor16 • 0
0
votes
6
replies
432
views
Differential Expression Analysis using DESeq2 in R
deseq2 R
updated 6 days ago by 14k • written 7 days ago by • 0
0
votes
2
replies
211
views
fastq screen aligner no specified.
BWA Bowtie2 FastqScreen
updated just now by 142k • written 6 days ago by • 0
0
votes
0
replies
136
views
Empty table plot using plotGseaTable()
FGSEA
6 days ago by Chris ▴ 280
0
votes
2
replies
254
views
Downloading older version of a tool
Alignment tools
6 days ago by Ruqaiya • 0
0
votes
1
reply
202
views
filtering before dada2
bbduk qiime2 dada2 metagenomic
updated 6 days ago by 43k • written 6 days ago by • 0
0
votes
1
reply
237
views
Extracting mutation status from MAF files - TCGA
TCGA maf mutation
updated 6 days ago by • 0 • written 7 days ago by • 0
0
votes
0
replies
156
views
Homer motif analysis
Homer
6 days ago by daffodil ▴ 10
0
votes
0
replies
121
views
Clarification on StringTie's `--merge` parameters
stringtie stringtie-merge
5 days ago by DGTool • 0
0
votes
0
replies
117
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria Metagenomics Database
5 days ago by Christopher • 0
0
votes
0
replies
128
views
Mitogenomes gap closure and making circular genome
gapclosure Mitogenomes validation circulargenome
5 days ago by KHURRAM SHAHZAD • 0
0
votes
1
reply
225
views
Help with DGEList function
DGEList R
updated 4 days ago by ▴ 100 • written 6 days ago by • 0
0
votes
0
replies
118
views
How to implement an IGV to streamlit app?
python streamlit igv
4 days ago by avigail.shnaider • 0
0
votes
1
reply
261
views
creating batch colum for batch correction
batch-correction combat
4 days ago by Expert ▴ 10
0
votes
0
replies
115
views
Error while loading model of Spatial data deconvolution using cell2location
Python cell2location
updated 4 days ago by 43k • written 4 days ago by ▴ 50
0
votes
0
replies
101
views
Normalizing AMR gene count data
abundance RGI
updated 4 days ago by 43k • written 4 days ago by ▴ 100
0
votes
0
replies
104
views
vdjtools
vdjtools
4 days ago by yueli7 ▴ 250
0
votes
0
replies
110
views
Cox Model with interaction item interpretation
Cox
4 days ago by Bine ▴ 60
0
votes
0
replies
104
views
Cellphonedb results
cpdb visulization cellphonedb
3 days ago by piotto ▴ 20
0
votes
0
replies
108
views
Get Paired TCRa/b from MIXCR
python r mixcr tcr_seq
3 days ago by Scott McKay ▴ 30
0
votes
0
replies
180
views
CellPhoneDB results
cellphonedb cpdb cell_surface_proteins
updated 3 days ago by 142k • written 10 weeks ago by ▴ 20
0
votes
4
replies
386
views
Highest variable features in single cell data
single-cell
3 days ago by carolofharvest ▴ 40
0
votes
0
replies
107
views
Imputation of missing genotypes
panel beagle imputation
3 days ago by analyst ▴ 50
0
votes
1
reply
283
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome 16S DESeq2
updated 3 days ago by 3.6k • written 4 days ago by • 0
0
votes
2
replies
236
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
3 days ago by Ahiad Chen Zion • 0
0
votes
3
replies
166
views
trying to count a pattern in my fastq file using bbduk
java bbduk bbmap fastq
updated 3 days ago by 142k • written 3 days ago by ★ 1.8k
93 results • Page 2 of 2
Recent Votes
Answer: EdgeR - relationship between logFC and coefficients
Comment: samtools tview symbols
Answer: Server or aws cloud- which one is better for gatk pipeline
Comment: Question about methylation location
Comment: Question about methylation location
Comment: Question about methylation location
How to use minimap2?
Recent Locations • All
United States, just now
India, 1 minute ago
United States, 2 minutes ago
Russia, 2 minutes ago
UCLA, 3 minutes ago
Brazil, 3 minutes ago
Mexico, 5 minutes ago
Recent Awards • All
Popular Question to Lélé • 0
Commentator to dthorbur ★ 1.9k
Popular Question to maria.soler • 0
Popular Question to melissachua90 ▴ 70
Popular Question to Lila M ★ 1.2k
Popular Question to Amr ▴ 160
Commentator to rpolicastro 13k
Recent Replies
Comment: fastq screen aligner no specified. by Ximena • 0
Thank u so much, my OS is linux. I will try your advice.
Comment: In IGV is this a heterogeneous mutation or false call? by Tuck898 • 0
No worries, I can completely appreciate that. I am having investigations similar to a condition causes by the RYR2 gene and was wondering i…
Comment: In IGV is this a heterogeneous mutation or false call? by Pierre Lindenbaum 161k
> RYR1 underneath although I was originally looking at the RYR2 gene. Sorry to sound stupid but does this make sense to what I've previousl…
Comment: In IGV is this a heterogeneous mutation or false call? by Tuck898 • 0
When click the blat it brings me to chr19 and mentions the RYR1 underneath although I was originally looking at the RYR2 gene. Sorry to sou…
Comment: In IGV is this a heterogeneous mutation or false call? by Tuck898 • 0
Thanks for that! I'll try and have a look and see what is amiss if I can... In your opinion what do you feel is wrong in my alignment from…
Comment: In IGV is this a heterogeneous mutation or false call? by Pierre Lindenbaum 161k
yeah.. look at that, there is something wrong in your alignment, many reads were mapped in a location but they are all clipped, so somethin…
Comment: Custom Reference panel creation for data imputation from .vcf files by analyst ▴ 50
Hi [Kevin][1]! I have 80 samples of GBS data. I have called variants through GATK pipeline. Now I have to perform imputation. Do I need …
Comment: In IGV is this a heterogeneous mutation or false call? by Tuck898 • 0
Ah I've just found 'show soft clipped bases' and this is what comes up... how come it is all greyed out? ![enter image description here][…
Comment: In IGV is this a heterogeneous mutation or false call? by Tuck898 • 0
I've just displayed clipped bases and this is what it shows. Does this look right? ![enter image description here][1] ![enter imag…
Comment: In IGV is this a heterogeneous mutation or false call? by Tuck898 • 0
Hi, I really appreciate you taking the time to reply. I'm still learning with IGV and sorry to sound very inexperienced but how would I che…
Answer: In IGV is this a heterogeneous mutation or false call? by Pierre Lindenbaum 161k
there is a clear shift in the depth just close to this mutation, you should set IGV to display the clipped bases + check if there is a DUP …
Comment: Too many unpaired forward reads found by Trimmomatic by SilhouetteQ • 0
Using fastp, I found that the adapter sequence for the forward read is corresponding to Trans2_rc in the NexteraPE-PE.fa, while for the re…
Comment: cellranger error message by Max • 0
I think the problem is your fastq_id. This should also read "RabhiN_PHLGEX". Hope this helps!
Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK by Giulio Genovese ▴ 390
@yokofakun is correct. Also, do notice that the GATK option `--RECOVER_SWAPPED_REF_ALT True` does not work with indels. In general, if your…
Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK by Pierre Lindenbaum 161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Traffic: 2466 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6