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152 results • Page 3 of 4
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News: Article: Crowdfunding Genomics And Bioinformatics
crowdfunding
updated 18 days ago by 38k • written 9.4 years ago by 8.2k
5
votes
0
replies
1.9k
views
News: Ebi Rdf Platform Launched Today
EBI
updated 19 days ago by 38k • written 9.4 years ago by 153k
17
votes
9
replies
3.2k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 19 days ago by 38k • written 9.5 years ago by 153k
2
votes
4
replies
1.7k
views
News: Reminder: Igb Tutorial Starts In 30 Minutes
visualization genome-browser RNA-seq
updated 19 days ago by 38k • written 9.5 years ago by ★ 2.3k
4
votes
0
replies
2.7k
views
News: Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization ChIP-seq RNA-seq igv genome-browser
updated 19 days ago by 38k • written 9.5 years ago by ★ 2.3k
1
vote
0
replies
2.5k
views
News: Bioconductor/R Workshop For High-Throughput Data Analysis (Web Version)
microarray bioconductor online next-gen
updated 19 days ago by 38k • written 9.5 years ago by ▴ 10
2
votes
2
replies
1.9k
views
News: Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education
updated 19 days ago by 38k • written 9.5 years ago by 153k
1
vote
0
replies
1.7k
views
News: Gatk Workshop Oct 21-22 To Coincide With Ashg Conference
conference gatk
updated 20 days ago by 38k • written 9.6 years ago by ★ 1.2k
4
votes
0
replies
1.6k
views
News: Iscb Wikipedia Competition 2013
wikipedia
updated 20 days ago by 38k • written 9.6 years ago by ★ 2.0k
12
votes
8
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3.0k
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News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 20 days ago by 38k • written 9.7 years ago by 9.9k
4
votes
4
replies
2.6k
views
News: Join The Dnanexus Developer Program
api cloud
updated 20 days ago by 38k • written 9.8 years ago by ▴ 30
2
votes
0
replies
1.8k
views
News: A Json-Based Annotation Format
genomic index annotation
updated 23 days ago by 38k • written 9.8 years ago by 153k
11
votes
2
replies
3.4k
views
News: Coursera: Computational Molecular Evolution
course
updated 23 days ago by 38k • written 9.8 years ago by 153k
22
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3
replies
2.7k
views
News: Biostar: 10,000 Question Milestone
meta
updated 23 days ago by 38k • written 9.8 years ago by 96k
1
vote
0
replies
1.2k
views
News: Galaxy Group At G+
galaxy
updated 23 days ago by 38k • written 9.8 years ago by ★ 1.3k
4
votes
3
replies
2.0k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 23 days ago by 38k • written 9.8 years ago by ▴ 960
3
votes
3
replies
2.1k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 23 days ago by 38k • written 9.9 years ago by ▴ 830
10
votes
0
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2.7k
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News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 24 days ago by 38k • written 10.0 years ago by ▴ 240
1
vote
1
reply
1.7k
views
News: 2013 Gmod Summer School - Now Accepting Applications!
galaxy
updated 23 days ago by 38k • written 9.9 years ago by ▴ 280
4
votes
0
replies
1.4k
views
News: Helen Berman Wins The 2013 Delano Award For Computational Biosciences
delano-award
updated 24 days ago by 38k • written 10.0 years ago by 18k
15
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4
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2.3k
views
News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 24 days ago by 38k • written 10.1 years ago by 153k
8
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0
replies
2.6k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 24 days ago by 38k • written 10.0 years ago by 9.5k
6
votes
0
replies
2.5k
views
News: New Methods Section In Plos Computational Biology
publications plos
updated 24 days ago by 38k • written 10.0 years ago by 18k
3
votes
1
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2.3k
views
News: Variathon V0.1 - 2013 - Comparing Existing Or New Pipelines For Variant Calling In Terms Of Accuracy And Efficiency
ngs conference
updated 24 days ago by 38k • written 10.1 years ago by 153k
9
votes
4
replies
3.4k
views
News: Conference Announcement - Camda 2013
conference classification
updated 24 days ago by 38k • written 10.2 years ago by ▴ 240
2
votes
0
replies
3.1k
views
News: Promoter Design Challenge: Design A Plant Promoter And We Will Construct It.
plant-promoter transcription-factor
updated 24 days ago by 38k • written 10.1 years ago by ▴ 20
3
votes
0
replies
2.1k
views
News: 2013 Gmod Community Survey
gff3 galaxy biomart
updated 24 days ago by 38k • written 10.1 years ago by ▴ 280
2
votes
3
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2.8k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 24 days ago by 38k • written 10.1 years ago by 96k
8
votes
6
replies
3.7k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 24 days ago by 38k • written 10.2 years ago by 9.9k
3
votes
0
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1.7k
views
News: Dnanexus Is Giving Away 1 Free Agbt 4-Day Badge
next-gen conference
updated 24 days ago by 38k • written 10.2 years ago by ▴ 30
2
votes
0
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3.3k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference
updated 24 days ago by 38k • written 10.2 years ago by ▴ 20
2
votes
1
reply
2.5k
views
News: Workshop: Programming For Evolutionary Biology
programming RNA-seq
updated 24 days ago by 38k • written 10.2 years ago by 9.9k
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 24 days ago by 38k • written 10.2 years ago by 20k
6
votes
0
replies
2.5k
views
News: Broad Releases Fastg Multiple Seq Assembly Format
FASTG reference-format
updated 24 days ago by 38k • written 10.3 years ago by ★ 5.2k
0
votes
2
replies
1.9k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 24 days ago by 38k • written 10.3 years ago by 9.9k
21
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7
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7.1k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 24 days ago by 38k • written 10.3 years ago by ▴ 250
1
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1
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1.8k
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News: 'Spring School 2013 - Epigenetics Of Civilization Diseases', May 27Th - 31St 2013, In Leipzig, Germany
epigenetics
updated 24 days ago by 38k • written 10.3 years ago by 9.9k
12
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0
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3.1k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils
updated 24 days ago by 38k • written 10.3 years ago by ▴ 360
9
votes
5
replies
8.2k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 24 days ago by 38k • written 10.3 years ago by ▴ 50
6
votes
2
replies
1.6k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 24 days ago by 38k • written 10.3 years ago by 11k
3
votes
2
replies
2.8k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 24 days ago by 38k • written 10.3 years ago by ▴ 20
0
votes
5
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1.8k
views
News: Ashg 2012 Biostar Meetup
ASHG
updated 24 days ago by 38k • written 10.4 years ago by 12k
7
votes
0
replies
1.7k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 24 days ago by 38k • written 10.4 years ago by 11k
45
votes
19
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5.6k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 25 days ago by 38k • written 10.5 years ago by 27k
31
votes
4
replies
6.1k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 25 days ago by 38k • written 10.5 years ago by ▴ 310
5
votes
3
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1.8k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 25 days ago by 38k • written 10.5 years ago by 11k
13
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2
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2.7k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 25 days ago by 38k • written 10.5 years ago by 96k
8
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0
replies
2.0k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 25 days ago by 38k • written 10.6 years ago by 96k
3
votes
3
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3.6k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 26 days ago by 38k • written 10.6 years ago by 96k
0
votes
0
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1.8k
views
News: Dublin - Software Carpentry In The Cloud Bootcamp
python cloud
updated 26 days ago by 38k • written 10.6 years ago by 2.3k
152 results • Page 3 of 4
Recent Votes
Answer: What is the difference between agilent_wholegenome and agilent_wholegenome_4x44k
C: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
unplaced, unlocalized, ... scaffolds from hg19 to GRCh38
C: extracting heterozygous snp from a vcf file
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
Answer: Where do find virulence gene information in a gff/gtf file?
Comment: split fasta file to train deep learning model
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Recent Replies
Answer: how to get pfam id of proteins belonging to a particular family along with seque by GenoMax 126k
Visit: https://www.uniprot.org/uniprotkb?query=(taxonomy_id:9606) Click on `customize columns`. Search with keyword `pfam` and check the…
Comment: how to get pfam id of proteins belonging to a particular family along with seque by Pierre Lindenbaum 153k
use the data in the download section ? $ wget -qO - "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz" …
Comment: Problem in converting SAM to BAM file by DROP SEQ by benformatics 3.4k
i think picard is expecting read groups. you may need to add them: https://gatk.broadinstitute.org/hc/en-us/articles/360037226472-AddOrRepl…
Comment: samtools idxstats not removing ChrM by benformatics 3.4k
i'm not sure this is doing what you expect? you should try filtering your bam directly and then running idx stats samtools view -h yo…
Comment: samtools idxstats not removing ChrM by Jeremy Leipzig 21k
can we see the output from this? `samtools idxstats chipseq/results/bowtie2/PPARg/PPARg_Input_Rep1_aln_sorted.bam` conversely just as an e…
Comment: Nextflow Stringtie: command not found Error by ATpoint 70k
It's bad practice to delete posts that received an answer ( = a user invested time - in this case me but it of course applies generally). D…
Comment: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil by EkHe • 0
Hi @juke34, if you're able, can you please clarify something for me (based on the answer you've given here)? Thanks a lot in advance. I als…
Answer: Practical Haplotype Graph -- Pathing Error by lcj34 ▴ 220
FYI - The latest PHG docker version (tag 1.4) has a fix for this issue.
Comment: Nextflow: No space left on device, process using output directory as input? by Maxime Garcia ▴ 220
Nextflow should only link inputs (unless stated otherwise), so even if you use outdir as input it should not be much of an issue, but still…
Comment: Problem in converting SAM to BAM file by DROP SEQ by lieven.sterck 14k
Hi https://www.biostars.org/u/126271/, welcome. it might be good to add some more info on your "question". Now it only shows an error mes…
Comment: Trying to install Roary with Conda results in error message by tobiwan • 0
Thank you for your answer I'm using Ubuntu 22.04.2 LTS, command line used: conda install roary. Or do you need a screenshot of the whole …
Comment: Nextflow: No space left on device, process using output directory as input? by colindaven 4.5k
Yes, don't use the outdir as an input. You might get infinite loops.
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by wangjincheng • 0
I tried unzipped file, it shows the same error
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by Pierre Lindenbaum 153k
> use python package to load and analysis vcf.gz files looks like it doesn't like gzipped file. Are you sure this software can read gzip…
Comment: Trying to install Roary with Conda results in error message by ATpoint 70k
This cannot be answered. Add your command line and operating system.
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