2 hours ago by
Claire Watson
▴
40
1
vote
0
replies
29
views
0
votes
0
replies
65
views
updated 15 hours ago by
Ram
43k
•
written 19 hours ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
112
views
updated 15 hours ago by
Ram
43k
•
written 1 day ago by
David Langenberger
11k
0
votes
0
replies
109
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
carlopecoraro2
★
2.5k
3
votes
0
replies
112
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
81
views
4 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
130
views
updated 4 days ago by
Ram
43k
•
written 5 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
189
views
updated 7 days ago by
Ram
43k
•
written 7 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
175
views
updated 7 days ago by
Ram
43k
•
written 8 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
173
views
0
votes
0
replies
142
views
0
votes
0
replies
177
views
12 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
183
views
updated 14 days ago by
Ram
43k
•
written 14 days ago by
carlopecoraro2
★
2.5k
1
vote
0
replies
128
views
2
votes
0
replies
123
views
2
votes
0
replies
122
views
updated 14 days ago by
Ram
43k
•
written 15 days ago by
Transmitting Science communication
▴
70
2
votes
0
replies
114
views
16 days ago by
Transmitting Science communication
▴
70
12
votes
2
replies
443
views
2
votes
0
replies
116
views
updated 16 days ago by
Ram
43k
•
written 16 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
118
views
updated 17 days ago by
Ram
43k
•
written 18 days ago by
carlopecoraro2
★
2.5k
1
vote
0
replies
173
views
updated 17 days ago by
Ram
43k
•
written 20 days ago by
carlopecoraro2
★
2.5k
8
votes
2
replies
777
views
0
votes
0
replies
143
views
updated 22 days ago by
Ram
43k
•
written 23 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
145
views
24 days ago by
carlopecoraro2
★
2.5k
3
votes
2
replies
565
views
0
votes
0
replies
203
views
updated 28 days ago by
Ram
43k
•
written 28 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
166
views
updated 28 days ago by
Ram
43k
•
written 28 days ago by
carlopecoraro2
★
2.5k
Recent Votes
Recent Locations •
All
France, 2 minutes ago
UCLA, 3 minutes ago
India, 3 minutes ago
France, 5 minutes ago
Russia, 5 minutes ago
Germany, 5 minutes ago
USA, 6 minutes ago
Recent Awards •
All
Popular Question to
sil_bioinfo
▴
40
Popular Question to
sapuizait
▴
10
Popular Question to
zdiazmar
▴
30
Popular Question to
hkarakurt
▴
180
Student to
John Torcivia
▴
70
Recent Replies
Comment: genome assembly records not present in assembly_summary.txt
by
GenoMax
141k
Can you clarify what `metainfo` you are referring to?
The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Comment: what is the purpose of indexing the reference genome (Kallisto)
by
i.sudbery
19k
Specifically:
If we want to look up all the places where a 31mer is in a genome without and index, we have to compare that 31 to the first…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
benformatics
3.9k
This is way easier to do solely in R now 10 years later.
library(GenomicFeatures)
library(rtracklayer)
## import GTF…
Answer: what is the purpose of indexing the reference genome (Kallisto)
by
dsull
★
5.8k
I'll see if I can explain things in super simple terms (albeit with some abuse of the actual technical details) to provide a conceptual und…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
Jalil Sharif
▴
80
The updated code in R using rtracklayer for reading a gtf file.
https://github.com/jalilsharif/gtf_utr_fix_r/blob/main/gencode_utr_fix_d…
Comment: Rare Disease Variant Pathway Analysis
by
The_PyPanda
▴
10
Thank you LauferVA,
Your advice has been useful and I now a lot to think about and read.
Also, I just wanted to clarify I do not ha…
Comment: CDS vs cDNA vs transcript for mapping RNA-Seq reads
by
Antonio R. Franco
★
5.1k
You cannot do it with Kallisto either. In fact, the indexation will fail in attempting to index a genome file
Comment: PCA plot
by
ATpoint
82k
What is your question? Add details and clarity. Ask a precise question and please avoid opening more questions on the same underlying issue…
Comment: genome assembly records not present in assembly_summary.txt
by
Joe
21k
If you have the accession numbers can you not use something like `eutils`?
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> Next, I tried using bedtools window
but in your original post you said
> tried finding the intersection of these bed files using bedto…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
Lada
▴
30
Thank you very much! I tried it out! This is a handy tool useful for many different applications, and in regards to my problem - although …
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
Thank you for replying Pierre.
I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP
awk 'B…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> using bcftools
Show us what you tried
Answer: gvcf joint calling
by
Jeremy Leipzig
22k
> Hi, guys, there is a question about the genomic gVCF file. I wonder
> that since gVCF contains the non-var block records, why after merge…
Comment: Missing protein (VEGF-A) in String db
by
shalespringer
•
0
Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
Traffic: 2660 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6