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30 results • Page
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12
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News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
28 days ago by
David Langenberger
11k
3
votes
0
replies
142
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 15 days ago by
Ram
43k • written 15 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
221
views
News:
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy
Generative-AI
scRNA
Machine-Learning
updated 11 days ago by
Ram
43k • written 12 days ago by
Claire Watson
▴ 60
2
votes
0
replies
125
views
News:
Course Functional Programming with R
Rstats
TScourses
Rproject
KeepLearning
Rlang
28 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
133
views
News:
Online course: Genome Annotation
Genome-Assembly
RNA-seq
Genome-Annotation
updated 28 days ago by
Ram
43k • written 29 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
136
views
News:
Online Course Introduction to Network Analysis and Modelling
Python
Network-Analysis
updated 27 days ago by
Ram
43k • written 27 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
136
views
News:
Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM
Rlang
Rstats
Rproject
updated 27 days ago by
Ram
43k • written 27 days ago by
Transmitting Science communication
▴ 70
1
vote
2
replies
237
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 1 day ago by
Weiwen
• 0 • written 2 days ago by
MICOS
▴ 10
1
vote
0
replies
190
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
6 days ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
1.1k
views
News:
The GDC Legacy Archive is retiring soon.
genomic-data-commons
tcga
gdc
3 days ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
142
views
News:
Online Live Course: Introduction to Machine Learning in R
Rstats
TScourses
Rlang
Rproject
updated 27 days ago by
Ram
43k • written 27 days ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
169
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 8 days ago by
Ram
43k • written 8 days ago by
Chakri
• 0
0
votes
0
replies
193
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 22 days ago by
Ram
43k • written 22 days ago by
David Langenberger
11k
0
votes
0
replies
103
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
16 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
138
views
News:
Cellosaurus release 49 is available
cell
biocuration
line
database
news
knowledgebase
5 days ago by
Amos Bairoch
▴ 120
0
votes
0
replies
131
views
News:
hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models
GLM
R
updated 14 days ago by
Ram
43k • written 14 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
28
views
News:
Online course: Introduction to Deep Learning
DeepLearning
Python
ConvolutionalNeuralNetwork
MachineLearning
3 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
213
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 20 days ago by
Ram
43k • written 20 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
174
views
News:
Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis
Statistics
R
updated 12 days ago by
Ram
43k • written 13 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
122
views
News:
Online course: Genome Annotation
Genome-Assembly
Genome-Annotation
9 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
107
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
3 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
195
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 20 days ago by
Ram
43k • written 20 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
158
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 23 days ago by
Ram
43k • written 23 days ago by
polarise
▴ 380
0
votes
0
replies
192
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
24 days ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
295
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
8 days ago by
David Langenberger
11k
0
votes
0
replies
88
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
1 day ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
197
views
News:
Online course: Meta-analysis in R
Meta-Analysis
R
updated 26 days ago by
Ram
43k • written 27 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
135
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 8 days ago by
Ram
43k • written 8 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
107
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 6 days ago by
Ram
43k • written 6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
148
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 17 days ago by
Ram
43k • written 17 days ago by
carlopecoraro2
★ 2.5k
30 results • Page
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Recent Votes
A: How to append the cell barcode and UMI information to the fastq header in paired
Answer: Decoding MM and ML tags in .SAM file
C: salmon quantification vs. star mapping
Answer: TFs and Gene databases
Answer: How can I analyze normalized expression data?
Comment: agilent human all exon sureselct v7 bed file
Answer: Best way to compare two samples in a VCF file
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Recent Replies
Answer: Obtaining Infinium Methylation450K manifest for hg38
by
marco.barr
▴ 90
Hi, you can check it from github here: [https://zwdzwd.github.io/InfiniumAnnotation][1]. I don't know if this is what you are looking fo…
Comment: RNA seq analysis
by
ATpoint
82k
It makes absolutely no sense to conduct such an analysis. I strongly discourage you to even start with it. Results will be utterly nonsense…
Comment: Differentail gene expression results
by
swbarnes2
14k
Cross-posted: https://support.bioconductor.org/p/9158194/
Answer: Seurat V5 integration
by
Bastien Hervé
5.3k
It will depend on your context and question. I guess you will want to compare gene expression between your conditions within cell types …
Answer: Error in plotting PCA plot in seurat
by
Adam
▴ 30
You get this error when you try to compare two data frames that have different dimensions. Try using the traceback() command to figure out …
Comment: Applying the metacell2 algorithm using python
by
Wayne
★ 2.0k
Sorry, this was supposed to be a comment appended to the chain above. I didn't mean to post as an answer.
Comment: Exploring Diet Effects in Single-Cell RNA Sequencing
by
Adam
▴ 30
> when I looked at the expression of aging marker genes, I noticed that diets sequenced in the same batch appeared more similar. How simil…
Answer: How to compare compare two Sam files to check mapping
by
DavidStreid
▴ 90
Curious if others have also benefited from Picard's [CompareSAMs][1] tool. Seems to do exactly what Madhu has requested. If the headers …
Answer: How/where can I get fungal mitogenome data for analysis?
by
alex.zaccaron
▴ 410
The best repository is probably NCBI Organelle Resources. You can search by taxonomy and download their mt genomes. Check it out for fungi…
Answer: How/where can I get fungal mitogenome data for analysis?
by
GenoMax
142k
Good place to start looking: https://www.ncbi.nlm.nih.gov/genome/organelle/ Mitochondrial genomes may also be included in full genomes so …
Comment: Correlating Bulk Differential Expression with quantitative
by
Nicholas
• 0
Thank you! I will give it a shot
Answer: How can I analyze normalized expression data?
by
Bastien Hervé
5.3k
This has been issued a dozen times before. Have a look at Limma package. https://support.bioconductor.org/p/126817/ https://support.bioco…
Comment: Error in plotting PCA plot in seurat
by
Bastien Hervé
5.3k
Without your code, it is impossible to make any statement. Please provide the code generating that issue. By googling, here is a [similar …
Comment: A question about reference genome for creating the consensus sequence
by
me
• 0
Hi, thanks for your information. I am a bit confused now. Does this mean the cram file already contained reference genome information? I in…
Comment: PseudobulkExpression.Seurat error
by
Bastien Hervé
5.3k
> None of the requested assays are present in the object Does the assay `originalexp` exist in your object `seurat_from_cds` ?
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