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520 results • Page 2 of 11
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News: NCBI : New API Keys for the E-utilities
pubmed eutils ncbi api
updated 15 days ago by 39k • written 5.6 years ago by 154k
3
votes
0
replies
990
views
News: New command line tool for annotating variants, vai.pl
UCSC SNP VAI
updated 20 days ago by 39k • written 6.0 years ago by ▴ 580
3
votes
1
reply
1.2k
views
News: GATK returns to a fully open-source license
gatk
updated 20 days ago by 39k • written 6.0 years ago by 98k
3
votes
0
replies
1.8k
views
News: Free Training in Bioinformatic analysis available with Pine Biotech T-BioInfo
RNA-Seq biotech next-gen-sequencing
updated 20 days ago by 39k • written 5.9 years ago by ▴ 70
3
votes
1
reply
686
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 1 day ago by 39k • written 4.0 years ago by ▴ 150
3
votes
2
replies
854
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 6 days ago by 39k • written 4.4 years ago by • 0
3
votes
0
replies
1.1k
views
News: Course on Programming for Evolutionary Biology
Evolution R genome Python
updated 7 days ago by 39k • written 4.5 years ago by ★ 2.2k
3
votes
2
replies
1.1k
views
News: Genome Informatics meeting software list
meetings genomics informatics software
updated 15 days ago by 39k • written 5.6 years ago by 26k
3
votes
0
replies
1.3k
views
News: NIH Strategic Plan for Data Science
nih data-science
updated 10 days ago by 39k • written 5.2 years ago by 129k
3
votes
0
replies
1.7k
views
News: Deep learning in GATK4
GATK4 deep-learning GATK
updated 14 days ago by 39k • written 5.4 years ago by ★ 1.2k
3
votes
3
replies
528
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
15 days ago by PeterC_NCBI ▴ 260
3
votes
1
reply
1.2k
views
News: Ensembl in Google Summer of Code
Ensembl Internship Google-Summer-of-Code GSOC
updated 22 days ago by 39k • written 6.2 years ago by 23k
3
votes
1
reply
1.8k
views
News: Precision Medicine Bioinformatics: From raw genome and transcriptome data to clinical interpretation (PMBI01)
next-gen assembly RNA-Seq gene
updated 13 days ago by 39k • written 5.3 years ago by ▴ 110
3
votes
1
reply
949
views
News: Results are now available for the precisionFDA CDRH Biothreat Challenge!
NGS metagenomics FDA biothreat
updated 6 days ago by 39k • written 4.3 years ago by ▴ 60
3
votes
0
replies
2.3k
views
News: Workshop: GATK Best Practices for Variant Discovery, Edinburgh, 17-19 July 2017
GATK workshop variant-calling
updated 21 days ago by 39k • written 6.1 years ago by ★ 3.7k
3
votes
0
replies
881
views
News: Free online Ensembl course
webinar Ensembl mooc training online
updated 8 days ago by 39k • written 4.8 years ago by 23k
3
votes
0
replies
1.8k
views
News: Landscape Genomics course in Berlin (Germany). Registration deadline is next week
next-gen R Genomics SNP
updated 20 days ago by 39k • written 6.0 years ago by ★ 2.3k
3
votes
1
reply
842
views
News: Course - Genomics with R and Bioconductor - Berlin
R Bioconductor
updated 1 day ago by 39k • written 3.9 years ago by ★ 2.3k
3
votes
2
replies
288
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
7 days ago by PeterC_NCBI ▴ 260
3
votes
2
replies
1.0k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 9 days ago by 39k • written 5.0 years ago by ★ 3.0k
3
votes
1
reply
796
views
News: Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics R Bioconductor
updated 13 hours ago by 39k • written 3.9 years ago by ★ 2.3k
3
votes
0
replies
1.3k
views
News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq RNA-Seq
updated 16 hours ago by 39k • written 3.9 years ago by ★ 2.3k
3
votes
1
reply
1.4k
views
News: Bioconductor 2017 Conference, Boston, July 26-28
R conference Bioconductor
updated 21 days ago by 39k • written 6.2 years ago by 26k
3
votes
0
replies
846
views
News: Invitation to submit articles to the Bioconductor Gateway on F1000Research
bioconductor
updated 10 days ago by 39k • written 5.2 years ago by 26k
2
votes
0
replies
775
views
News: Interested in learning more about GWAS? Course in Canada this September
GWAS pipeline
updated 17 hours ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
2.6k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 6 days ago by 39k • written 4.4 years ago by 98k
2
votes
2
replies
1.2k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 15 days ago by 39k • written 5.5 years ago by ★ 2.3k
2
votes
0
replies
3.1k
views
News: "Practical GWAS Using Linux and R" Workshop
GWAS Linux R next-gen
updated 17 days ago by 39k • written 5.9 years ago by ★ 2.3k
2
votes
2
replies
1.4k
views
News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 8 days ago by 39k • written 4.9 years ago by ▴ 10
2
votes
0
replies
860
views
News: Registration open for Galaxy Community Conference (GCC) 2019
galaxy
updated 2 days ago by 39k • written 4.2 years ago by 103k
2
votes
0
replies
4.1k
views
News: Workshop: Analysis of single cell RNA-seq data
R next-gen RNA-Seq alignment
updated 17 days ago by 39k • written 5.9 years ago by ★ 2.3k
2
votes
1
reply
1.4k
views
News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 2 days ago by 39k • written 4.2 years ago by 9.9k
2
votes
0
replies
664
views
News: Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene RNA-Seq next-gen
updated 1 day ago by 39k • written 4.0 years ago by ★ 2.3k
2
votes
1
reply
1.2k
views
News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 20 days ago by 39k • written 6.0 years ago by ▴ 610
2
votes
0
replies
1.6k
views
News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 1 day ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
911
views
News: Programmatic access uniprot.org: Deprecation of legacy REST URLs /batch and /mapping - please replace by /uploadlists
UniProt
updated 9 days ago by 39k • written 5.0 years ago by ★ 2.2k
2
votes
0
replies
1.1k
views
News: Coming Soon precisionFDA Hidden Treasures Warm Up Challenge, July 18 - September 12, 2017
next-gen-sequencing
updated 17 days ago by 39k • written 5.9 years ago by ▴ 90
2
votes
3
replies
1.4k
views
News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference BOSC GCC
updated 13 days ago by 39k • written 5.3 years ago by ★ 2.2k
2
votes
1
reply
755
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
2
votes
0
replies
1.1k
views
News: Mendel,MD: A user-friendly open-source web tool for analyzing WES and WGS in the diagnosis of patients with Mendelian disorders
variant-prioritization mendelian-disorders
updated 20 days ago by 39k • written 6.0 years ago by ★ 1.2k
2
votes
0
replies
2.2k
views
News: Course on "Genomic data visualisation and manipulation using Python"
genome next-gen RNA-Seq
updated 16 days ago by 39k • written 5.7 years ago by ▴ 60
2
votes
2
replies
2.4k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 15 days ago by 39k • written 5.6 years ago by ★ 2.3k
2
votes
0
replies
844
views
News: GWAS course in Canada
GWAS
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
2
votes
0
replies
922
views
News: Free Ensembl browser workshop: Hinxton, Cambridge, UK, 17 October 2018
training course ensembl workshop
updated 8 days ago by 39k • written 4.8 years ago by ▴ 330
2
votes
0
replies
1.3k
views
News: Community Feedback - OBF mailing list issues
Biojava Biopython EMBOSS BioPerl Bioruby
updated 14 days ago by 39k • written 5.5 years ago by ★ 2.2k
2
votes
0
replies
916
views
News: #NGSchool2019: Machine Learning for Biomedicine
ngschool workshop training summer-school next-gen
updated 2 days ago by 39k • written 4.1 years ago by ▴ 290
2
votes
1
reply
957
views
News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 8 days ago by 39k • written 4.7 years ago by ▴ 150
2
votes
0
replies
867
views
News: Metagenomics and Metabarcoding Course @ Edinburgh Genomics
metagenomics metabarcoding course workshop
updated 13 hours ago by 39k • written 3.9 years ago by ▴ 40
2
votes
3
replies
1.8k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 17 days ago by 39k • written 5.9 years ago by ▴ 70
2
votes
0
replies
1.8k
views
News: Coding,data management and Shiny applications using RStudio for evolutionary biologists
coding data-management R shiny
updated 22 days ago by 39k • written 6.2 years ago by ▴ 110
520 results • Page 2 of 11
Recent Votes
Comment: ggsave() bug in ggplot2?
Comment: BioInformatics, Software
Comment: Single Cell Rna Seq Using BD Rhapsody
Comment: DP meaning in VCF files
Answer: Help with running ATAC using Encode pipeline
Comment: sorting BAM file
Comment: Create customized gene annotation file
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Recent Replies
Answer: How to extract haplotype data from phased bcf files by Pierre Lindenbaum 154k
use %TGT (translated genotype) $ bcftools query -f '[%CHROM %POS %TGT\n]'
Comment: convert data frame with character column to data frame with integer column by Basti ★ 1.5k
You would better give an example with values because we don't know what is in each variable so we cannot give you a precise code, but seems…
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data. by ATpoint 72k
This information is annotated in GTF files. You can get them for almost every annotated species from Ensembl. There is a column `gene_bioty…
Answer: DE genes across multiple scRNAseq clusters-are they significantly enriched? by ATpoint 72k
First of all, with thousands of DEGs you might want to choose a DE framework that allows testing against a fold change threshold, such as `…
Comment: PacBio Pipeline and Tools for Variant Call by Kiran ▴ 80
Thanks a lot William, I am Clear now
Comment: The famous WGS dataset, Ashkenazi Trio? by cmdcolin ★ 3.0k
what is valuable information to you
Answer: Why weblogo of biopython doesn't work? by minakshiboruahassam • 0
The weblogo3 application is giving same file even if u run the scripts separately on python standalone or whatever. The weblogo command is …
Answer: Make a BedGraph file by rfran010 ▴ 80
I would suggest bedtools makewindows to generate your 3,000bp bins then bedtools coverage to generate fraction of repeats over your windows…
Answer: What is the best way to clean bulk RNA-seq data? by rfran010 ▴ 80
Honestly, I am a fan of visualizing to select a threshold since these can depend on the specific experiment. I would even just run standard…
Answer: Help with running ATAC using Encode pipeline by rfran010 ▴ 80
Read all instructions carefully Specifically, this info is under the "Input JSON file specification" section with details in the followin…
Answer: BioInformatics, Software by rfran010 ▴ 80
There have been some good suggestions, but it seems like you may be asking one of two questions, either (1) how to do bioinformatics? or (2…
Answer: Genome assembly statistical tools by Bryan • 0
I'll follow up what a few others have mentioned, but I like stats.sh within the BBTools package for raw assembly stats. I'll then polish my…
Comment: how to design a guide RNA by rfran010 ▴ 80
I agree this is very basic CRISPR mechanism and you'd be better off reading sites that could explain better than me. However, there is a lo…
Comment: ATAC peak-calling: same peak ID across multiple experimental conditions? by rfran010 ▴ 80
You want to use the MACS2 score columns? You can retain these with bedtools option `-c` . This will retain the score columns from any merge…
Comment: best annotation approach for peaks by rfran010 ▴ 80
The number of regions annotated as "Promoters" is the same regardless of TSS length? You can add this argument to annotatePeak (for mouse M…
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