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1,000 results • Page
4 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
83
views
Correct way of reducing predictive model complexity
lasso
glmnet
predictvemodeling
regression
13 days ago by
sativus
▴ 20
0
votes
0
replies
90
views
Difficulties getting **the adjacency file** necessary for **aracne2regulon** function.
VIPER
MARINA
ARACNe
13 days ago by
Biostars2200
• 0
0
votes
0
replies
144
views
CIRIquant: ValueError: file has no sequences defined (mode='rb') - is it SAM/BAM format? Consider opening with check_sq=False
Ciriquant
updated 13 days ago by
Carlo Yague
8.7k • written 13 days ago by
Atul K.
• 0
2
votes
5
replies
498
views
Marking duplicates using UMIs
Deduplication
UMI
updated 13 days ago by
i.sudbery
19k • written 14 days ago by
Lipika
• 0
0
votes
0
replies
147
views
How to extract the mutations specific to cancer after variant annotation
variant-annotation
updated 13 days ago by
Ram
43k • written 14 days ago by
sainavyav22
• 0
0
votes
0
replies
153
views
Bacterial genome alignment with mauve
Bacteria
mauve
genome
14 days ago by
rthapa
▴ 90
0
votes
0
replies
142
views
Reparametrization of .str (param penalty > 100) File from CGenFF for Ligand Simulation in GROMACS
Simulation
CGenFF
Gromacs
VMD
14 days ago by
Mamatha Y S
• 0
0
votes
2
replies
302
views
bam merging for archaic samples
samtools
bam
updated 13 days ago by
Ram
43k • written 14 days ago by
Matteo Ungaro
▴ 100
1
vote
0
replies
553
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
15 days ago by
mathavanbioinfo
▴ 90
0
votes
0
replies
233
views
Using samtools with GCS (google cloud storage) on a docker container seems to give "Protocol Not Supported" error
samtools
gcs
14 days ago by
abhishekghadge
• 0
2
votes
5
replies
750
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 14 days ago by
Jesse
▴ 740 • written 15 days ago by
Ann
★ 2.4k
0
votes
0
replies
201
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 15 days ago by
Ram
43k • written 15 days ago by
mja
• 0
0
votes
0
replies
200
views
scRNA Cluster frequency
CV
PCA
scRNA
Cluster-Frequency
15 days ago by
Nitin
• 0
0
votes
0
replies
195
views
Chemical structure validation
structure
cap
validation
metabolite
15 days ago by
Rodolfo Adrián
• 0
0
votes
1
reply
287
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 15 days ago by
GenoMax
142k • written 15 days ago by
bioyas
▴ 10
0
votes
0
replies
220
views
Copy number variation plot
Copy-number-variation
genomics
updated 15 days ago by
Ram
43k • written 15 days ago by
Emmi
• 0
0
votes
0
replies
196
views
SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs
ngsTools
ANGSD
genomics
15 days ago by
DanielEB_fisk
▴ 20
0
votes
1
reply
305
views
Could you please assist in identifying this cluster?
single-cell
updated 15 days ago by
Ram
43k • written 15 days ago by
carolofharvest
▴ 30
0
votes
0
replies
216
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 15 days ago by
Ram
43k • written 16 days ago by
Dinmukhamed
• 0
0
votes
0
replies
209
views
miRDeep2: How to get the read counts
mirdeep2
16 days ago by
Atul K.
• 0
0
votes
0
replies
213
views
Lncipedia GTF file error
Proteomics
updated 15 days ago by
Ram
43k • written 16 days ago by
atharvakarkare14
▴ 30
3
votes
3
replies
516
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 15 days ago by
swbarnes2
14k • written 16 days ago by
noodle
▴ 580
0
votes
2
replies
573
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
16 days ago by
航太郎
• 0
0
votes
0
replies
227
views
create genewise sync file in popoolation
popoolation
updated 16 days ago by
GenoMax
142k • written 16 days ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
406
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
16 days ago by
Ashok
• 0
0
votes
2
replies
446
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
16 days ago by
Ashok
• 0
0
votes
0
replies
227
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 16 days ago by
Ram
43k • written 16 days ago by
samuelkalandarov2002
▴ 10
0
votes
2
replies
454
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
15 days ago by
_quantum_girl_
▴ 10
0
votes
0
replies
219
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
12 days ago by
Javier
• 0
0
votes
0
replies
195
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
16 days ago by
enferdeflame
• 0
1
vote
1
reply
442
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 14 days ago by
Gordon Smyth
★ 7.1k • written 16 days ago by
Chris
▴ 260
0
votes
1
reply
413
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 16 days ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
0
votes
0
replies
169
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 16 days ago by
Ram
43k • written 17 days ago by
bioinfo223
▴ 10
0
votes
0
replies
189
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
17 days ago by
P.
• 0
0
votes
0
replies
180
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
17 days ago by
ekirsch
• 0
1
vote
1
reply
478
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
15 days ago by
renan.igor
• 0
0
votes
0
replies
202
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
17 days ago by
synat.keam
▴ 100
0
votes
1
reply
292
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 17 days ago by
GenoMax
142k • written 17 days ago by
ycts
• 0
0
votes
4
replies
626
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
16 days ago by
Kai Xin
• 0
1
vote
1
reply
247
views
Retrieve a % coverage for each transcript
RNA-seq
updated 17 days ago by
Ram
43k • written 17 days ago by
jammydodger123456
▴ 40
0
votes
2
replies
407
views
How can I solve this error?
metal
17 days ago by
22211020193
• 0
0
votes
0
replies
179
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 17 days ago by
GenoMax
142k • written 17 days ago by
srimmer
• 0
1
vote
2
replies
307
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 17 days ago by
Ram
43k • written 17 days ago by
aniigodwinn
• 0
0
votes
0
replies
366
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
17 days ago by
Ronin
• 0
2
votes
7
replies
904
views
Removing duplicates
duplicates
ONT
minimap2
updated 16 days ago by
noodle
▴ 580 • written 18 days ago by
quentinperriere
• 0
0
votes
1
reply
219
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 18 days ago by
DKA
▴ 40 • written 18 days ago by
james.melhorn
• 0
0
votes
1
reply
208
views
Freyja plot error
Freyja
updated 17 days ago by
Ram
43k • written 18 days ago by
Adyasha
• 0
0
votes
0
replies
174
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
18 days ago by
chemokine-1
▴ 10
0
votes
4
replies
551
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
17 days ago by
feather-W
• 0
0
votes
2
replies
274
views
Bedmethyl file format
bedmethyl
methylation
updated 18 days ago by
GenoMax
142k • written 18 days ago by
njornet
▴ 20
1,000 results • Page
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Comment: Raw counts using stringtie
Comment: Raw counts using stringtie
Answer: GRCh38.gmap file
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
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Comment: How to access TCGA samples that were treated with a specific drug?
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These TCGA samples were taken 10 ~ 20 years ago, and there is no way they have been treated by the modern immunotherapy. Are you sure tha…
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Comment: GRCh38.gmap file
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Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
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Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
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Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
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Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
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This the tool still problematic?
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Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
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Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
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