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7 results • Page
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Tutorial:
Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm
rna-seq
bioconductor
updated 4 days ago by
Ram
40k • written 10.0 years ago by
Irsan
★ 7.7k
36
votes
5
replies
5.8k
views
Tutorial:
[Beginner] Introduction to bioinformatics file types
fastq
fasta
bed
SAM
updated 24 days ago by
gallardodiazmiriam
▴ 20 • written 8.2 years ago by
Luke Crichton
▴ 410
19
votes
13
replies
6.9k
views
9 follow
Tutorial:
Setting up Aspera Connect (ascp) on Linux and macOS
ascp
aspera
updated 3 days ago by
dariober
14k • written 15 months ago by
ATpoint
77k
18
votes
22
replies
8.1k
views
10 follow
Tutorial:
Create de novo repeat library
de-novo
repeat
annotation
updated 9 days ago by
evoecogen
▴ 20 • written 3.8 years ago by
Juke34
8.2k
4
votes
2
replies
2.3k
views
Tutorial:
Building mosdepth on macOS
nim
mosdepth
updated 27 days ago by
GenoMax
134k • written 3.4 years ago by
ATpoint
77k
1
vote
0
replies
184
views
Tutorial:
Managing your data (BAM, VCF, sample, phenotype) with RDF and SPARQL.
rdf
sparql
data-management
graph
updated 18 days ago by
Ram
40k • written 18 days ago by
Pierre Lindenbaum
157k
0
votes
1
reply
188
views
Tutorial:
TAPIS installation and usage
APA
Iso-seq
splicing
TAPIS
analysis
alternative
updated 20 days ago by
ATpoint
77k • written 20 days ago by
JC
▴ 30
7 results • Page
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Recent Votes
Comment: Rna-seq analysis using FASTA file
Comment: Convert amino acid sequences into nucleotide sequences
Answer: Rna req analysis using FASTA file
Comment: Convert amino acid sequences into nucleotide sequences
Comment: Convert amino acid sequences into nucleotide sequences
Answer: limma voom -- all genes after filtering are differentially expressed
Comment: Match variants from RNAseq with known databases
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Recent Replies
Comment: Convert amino acid sequences into nucleotide sequences
by
Matthias Zepper
4.1k
If you are already working with pRESTO, why are you trying to come up with your own custom filtering instead of using [the tool that is par…
Answer: DEG gene list and find common TF from public ChlP-Seq data
by
Trivas
★ 1.5k
I've used the R package `TFEA.ChIP` but it feels a little limited and hard to explain to a general biology audience.
Answer: GOSt Plot
by
Trivas
★ 1.5k
A hacky solution would be to use `trace(gostplot, edit=TRUE)` and manually change the size of the points. Changes are temporary and not rep…
Comment: Convert amino acid sequences into nucleotide sequences
by
Joe
21k
But you say here you have a reference genome: >Yes, there is a reference genome of the specie.
Comment: How can I compute energy from a protein PDB file?
by
Ram
40k
Cross-posted on bioinfo SE as well: https://bioinformatics.stackexchange.com/questions/21614/how-can-i-compute-energy-from-a-protein-pdb-fi…
Comment: Match variants from RNAseq with known databases
by
Ram
40k
Your concern is valid. bcftools has options to match CHROM & POS, CHROM+POS+REF and CHROM+POS+REF+ALT. You either need to ensure your varia…
Comment: Rna-seq analysis using FASTA file
by
Ram
40k
> to convert FASTA sequences for SARS CoV-2 from GISAID into read counts matrix > after assigning dummy scores to my fasta file to convert…
Comment: Convert amino acid sequences into nucleotide sequences
by
sperezilvia
▴ 10
Yeah, I know, thank you. Just please understand since I'm working with data not published I can't talk a lot about it.. I know what I have …
Comment: Convert amino acid sequences into nucleotide sequences
by
sperezilvia
▴ 10
sorry, data analysis with pRESTO (Immcantation tool)
Comment: Convert amino acid sequences into nucleotide sequences
by
GenoMax
134k
> I'm still new in programming and I just want to be sure all I'm doing is okay, since I don't have any help of other bioinformatics in ou…
Comment: How to convert data in r?
by
Ram
40k
You're missing the `%>%` before the `data.frame()`. Technically though, `magrittr` would suffice. In the process of removing unnecessary st…
Comment: Convert amino acid sequences into nucleotide sequences
by
GenoMax
134k
> data analysis with some tools, seqkit,... If you don't provide complete/accurate information then you are not likely to get usable help.…
Comment: Automate the Splitting of a VCF File by Sample (bcftools)
by
Ram
40k
Might be an OS problem, this might bypass the need to manually remove new line characters: ``` dos2unix samples.txt while read sample; do …
Comment: Automate the Splitting of a VCF File by Sample (bcftools)
by
Ram
40k
I think `+split` and `plugin split` are not just similar, they're the same. What do you mean by "doesn't co-operate on my cluster"? What ve…
Comment: Convert amino acid sequences into nucleotide sequences
by
sperezilvia
▴ 10
Mod note: apologies, I edited the wrong comment.
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