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0
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12k
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Comment: C: Producing the Reverse-complement of each sequence in fastq files
8.7 years ago by bharata1803 ▴ 580
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1
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2.8k
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Comment: C: Samtools variant caller for each individual sample
8.7 years ago by bharata1803 ▴ 580
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1
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2.8k
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Comment: C: Samtools variant caller for each individual sample
8.7 years ago by bharata1803 ▴ 580
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0
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5.8k
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Comment: C: Converting SNP array variant data to VCF
8.7 years ago by bharata1803 ▴ 580
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2
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5.8k
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Answer: A: Variant Call Format (VCF)
8.7 years ago by bharata1803 ▴ 580
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1
reply
2.6k
views
Error in plot-vcfstats
samtools bcftools
updated 4.2 years ago by ▴ 270 • written 8.7 years ago by ▴ 580
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0
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5.3k
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Comment: C: Tools to analyze protein sequence if mutation occur
8.7 years ago by bharata1803 ▴ 580
4
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6
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5.3k
views
Tools to analyze protein sequence if mutation occur
sequence alignment
updated 8.7 years ago by 18k • written 8.7 years ago by ▴ 580
0
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1
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5.3k
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Comment: C: Tools to analyze protein sequence if mutation occur
8.7 years ago by bharata1803 ▴ 580
5
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2
replies
3.1k
views
miRNA binding detection from RNA-seq reads
rna-seq micro-rna
updated 8.8 years ago by ▴ 610 • written 9.5 years ago by ▴ 580
0
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1
reply
4.2k
views
PPM, PSSM, and PWM
sequence
updated 8.9 years ago by 5.8k • written 8.9 years ago by ▴ 580
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0
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3.4k
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Comment: C: Ensembl regulatory build promoter region and gene name
9.1 years ago by bharata1803 ▴ 580
0
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1
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3.4k
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Comment: C: Ensembl regulatory build promoter region and gene name
9.1 years ago by bharata1803 ▴ 580
0
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1
reply
3.4k
views
Comment: C: Ensembl regulatory build promoter region and gene name
9.1 years ago by bharata1803 ▴ 580
0
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6
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3.4k
views
Ensembl regulatory build promoter region and gene name
promoter fasta
updated 9.1 years ago by 105k • written 9.1 years ago by ▴ 580
2
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2
replies
2.3k
views
Workshop or training related to Bioinformatics
workshop training
updated 9.3 years ago by ★ 5.2k • written 9.3 years ago by ▴ 580
0
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1
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2.6k
views
Is there any paper about motif finding based on PWM on genome sequence?
sequence PWM transcription factor
9.3 years ago by bharata1803 ▴ 580
0
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1
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9.6k
views
Comment: C: Download transfac public database
9.4 years ago by bharata1803 ▴ 580
0
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0
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2.2k
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Answer: A: KEGG Gene Regulation Information
9.4 years ago by bharata1803 ▴ 580
0
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0
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9.6k
views
Comment: C: Download transfac public database
9.4 years ago by bharata1803 ▴ 580
4
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8
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9.6k
views
Download transfac public database
transcription factor transfac
updated 9.4 years ago by ▴ 440 • written 9.4 years ago by ▴ 580
0
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1
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9.6k
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Comment: C: Download transfac public database
9.4 years ago by bharata1803 ▴ 580
0
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1
reply
7.4k
views
Comment: C: JASPAR motifs download
9.4 years ago by bharata1803 ▴ 580
4
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5
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7.4k
views
JASPAR motifs download
transcription factor jaspar sequence
9.4 years ago by bharata1803 ▴ 580
7
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1
reply
6.1k
views
Ensembl chromosome other than 1-22, X, and Y
chromosome ensembl
updated 9.4 years ago by 24k • written 9.4 years ago by ▴ 580
0
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0
replies
2.7k
views
Aligning TF binding site to target gene method
TFBS prediction
9.4 years ago by bharata1803 ▴ 580
0
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1
reply
3.5k
views
Comment: C: Transcription factor binding site prediction program/algorithm
9.4 years ago by bharata1803 ▴ 580
0
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0
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2.9k
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Comment: C: Identify genes near occurrences of a TF binding sequence
9.4 years ago by bharata1803 ▴ 580
4
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3
replies
3.5k
views
Transcription factor binding site prediction program/algorithm
transcription factor prediction binding site
updated 9.4 years ago by ★ 1.2k • written 9.4 years ago by ▴ 580
4
votes
2
replies
7.9k
views
Cytoscape 3.3.0 visualize network with up/down regulated color
cytoscape
updated 9.5 years ago by 27k • written 9.5 years ago by ▴ 580
2
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3
replies
4.3k
views
Biological difference for selecting alignment reference to DNA vs cDNA
RNA-Seq alignment
updated 9.5 years ago by 48k • written 9.5 years ago by ▴ 580
0
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0
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4.3k
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Comment: C: Biological difference for selecting alignment reference to DNA vs cDNA
9.5 years ago by bharata1803 ▴ 580
0
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1
reply
2.2k
views
Comment: C: How to visualize a set of sequence alignments that all have the same reference s
9.5 years ago by bharata1803 ▴ 580
2
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1
reply
2.2k
views
Answer: A: How to visualize a set of sequence alignments that all have the same reference s
9.5 years ago by bharata1803 ▴ 580
0
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0
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5.3k
views
Comment: C: Around 3 months short course or summer school in Bioinformatics
9.6 years ago by bharata1803 ▴ 580
0
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0
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5.3k
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Comment: C: Around 3 months short course or summer school in Bioinformatics
9.6 years ago by bharata1803 ▴ 580
0
votes
0
replies
3.7k
views
Comment: C: miRNA binding position in gene transcript (alignment of cDNA FASTA and miRNA FAS
9.6 years ago by bharata1803 ▴ 580
0
votes
1
reply
2.3k
views
Generating simulated gene expression data sample based on DESeq2 result
R RNA-Seq
updated 9.6 years ago by 20 • written 9.7 years ago by ▴ 580
0
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1
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3.7k
views
Comment: C: miRNA binding position in gene transcript (alignment of cDNA FASTA and miRNA FAS
9.6 years ago by bharata1803 ▴ 580
0
votes
6
replies
3.7k
views
miRNA binding position in gene transcript (alignment of cDNA FASTA and miRNA FASTA file)
mirna sequence
updated 9.6 years ago by ▴ 520 • written 9.7 years ago by ▴ 580
0
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0
replies
3.7k
views
Comment: C: miRNA binding position in 5' UTR, CDS, and 3' UTR
9.7 years ago by bharata1803 ▴ 580
1
vote
4
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6.8k
views
Get sequence from aligned BAM file according to interval in BED file
alignment sequence
updated 9.7 years ago by ★ 1.2k • written 9.7 years ago by ▴ 580
0
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0
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6.8k
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Comment: C: Get sequence from aligned BAM file according to interval in BED file
9.7 years ago by bharata1803 ▴ 580
1
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2
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2.7k
views
Finding miRNA motifs from Exome sequencing
exome-seq miRNA sequence
9.7 years ago by bharata1803 ▴ 580
0
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0
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7.1k
views
Comment: C: Download human 3 UTR FASTA file
9.7 years ago by bharata1803 ▴ 580
0
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3
replies
3.5k
views
Log expression for machine learning input
limma rna-seq deseq2
updated 3.3 years ago by 45k • written 9.8 years ago by ▴ 580
0
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1
reply
7.1k
views
Comment: C: Download human 3 UTR FASTA file
9.7 years ago by bharata1803 ▴ 580
0
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1
reply
7.1k
views
Comment: C: Download human 3 UTR FASTA file
9.7 years ago by bharata1803 ▴ 580
8
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7
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7.1k
views
Download human 3 UTR FASTA file
genome
9.7 years ago by bharata1803 ▴ 580
0
votes
1
reply
2.5k
views
Detecting miRNA effect from RNA-seq
RNA-Seq
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 580
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