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Showing :
questions
0
votes
0
replies
2.4k
views
Aligning TF binding site to target gene method
TFBS
prediction
7.9 years ago by
bharata1803
▴ 560
4
votes
3
replies
2.8k
views
Transcription factor binding site prediction program/algorithm
transcription factor
prediction
binding site
updated 7.9 years ago by
Ar
★ 1.1k • written 7.9 years ago by
bharata1803
▴ 560
4
votes
2
replies
7.1k
views
Cytoscape 3.3.0 visualize network with up/down regulated color
cytoscape
updated 8.0 years ago by
Jean-Karim Heriche
27k • written 8.0 years ago by
bharata1803
▴ 560
2
votes
3
replies
3.3k
views
Biological difference for selecting alignment reference to DNA vs cDNA
RNA-Seq
alignment
updated 8.0 years ago by
WouterDeCoster
47k • written 8.0 years ago by
bharata1803
▴ 560
0
votes
1
reply
2.0k
views
Generating simulated gene expression data sample based on DESeq2 result
R
RNA-Seq
updated 8.1 years ago by
Biostar
20 • written 8.2 years ago by
bharata1803
▴ 560
0
votes
6
replies
2.9k
views
miRNA binding position in gene transcript (alignment of cDNA FASTA and miRNA FASTA file)
mirna
sequence
updated 8.1 years ago by
dario.garvan
▴ 520 • written 8.2 years ago by
bharata1803
▴ 560
1
vote
4
replies
5.9k
views
Get sequence from aligned BAM file according to interval in BED file
alignment
sequence
updated 8.2 years ago by
george.ry
★ 1.2k • written 8.2 years ago by
bharata1803
▴ 560
1
vote
2
replies
2.2k
views
Finding miRNA motifs from Exome sequencing
exome-seq
miRNA
sequence
8.2 years ago by
bharata1803
▴ 560
0
votes
3
replies
2.9k
views
Log expression for machine learning input
limma
rna-seq
deseq2
updated 21 months ago by
Ram
43k • written 8.3 years ago by
bharata1803
▴ 560
8
votes
7
replies
5.9k
views
Download human 3 UTR FASTA file
genome
8.2 years ago by
bharata1803
▴ 560
0
votes
1
reply
2.2k
views
Detecting miRNA effect from RNA-seq
RNA-Seq
updated 22 months ago by
Ram
43k • written 8.2 years ago by
bharata1803
▴ 560
4
votes
2
replies
2.1k
views
Get miRNA expression from RNA-seq
RNA-Seq
alignment
updated 21 months ago by
Ram
43k • written 8.2 years ago by
bharata1803
▴ 560
0
votes
2
replies
3.2k
views
Meta analysis of RNA-seq data
salmon
meta-analysis
rna-seq
updated 21 months ago by
Ram
43k • written 8.5 years ago by
bharata1803
▴ 560
2
votes
3
replies
3.7k
views
Alternative sequence gene Ensembl ID
ensembl
updated 21 months ago by
Ram
43k • written 8.4 years ago by
bharata1803
▴ 560
1
vote
2
replies
2.3k
views
KEGG pathway gene list different from the picture
pathway
kegg
updated 21 months ago by
Ram
43k • written 8.4 years ago by
bharata1803
▴ 560
1
vote
11
replies
3.5k
views
Microarray and RNA-seq different result
rna-seq
microarray
updated 21 months ago by
Ram
43k • written 8.4 years ago by
bharata1803
▴ 560
0
votes
2
replies
2.4k
views
Interpret Pathway analysis result
pathway
updated 21 months ago by
Ram
43k • written 8.4 years ago by
bharata1803
▴ 560
0
votes
0
replies
2.6k
views
Choosing Background Genes For Go Enrichment Analysis from mixed data between microarray and RNA-seq
RNA-Seq
gene-ontology
microarray
updated 21 months ago by
Ram
43k • written 8.5 years ago by
bharata1803
▴ 560
11
votes
2
replies
12k
views
About logFC and p-value( and adj p-value)
RNA-Seq
micro-array
updated 21 months ago by
Ram
43k • written 8.5 years ago by
bharata1803
▴ 560
0
votes
3
replies
2.9k
views
Comparison of microarray and RNA-seq data
RNA-Seq
microarray
updated 8.5 years ago by
anioannides6
▴ 10 • written 8.5 years ago by
bharata1803
▴ 560
0
votes
5
replies
2.0k
views
Data with only 1 pair for DEG analysis
RNA-Seq
R
DESeq2
updated 8.5 years ago by
Chirag Parsania
★ 2.0k • written 8.5 years ago by
bharata1803
▴ 560
2
votes
10
replies
4.1k
views
Salmon warning detected suspicious pair
salmon
RNA-Seq
updated 3.1 years ago by
Ram
43k • written 8.5 years ago by
bharata1803
▴ 560
2
votes
2
replies
2.1k
views
About Gene Transcriptional Regulatory Network
genome
updated 18 months ago by
Ram
43k • written 8.8 years ago by
bharata1803
▴ 560
0
votes
3
replies
2.5k
views
Varscan2 warning : resetting normal
varscan2
alignment
updated 17 months ago by
Ram
43k • written 8.9 years ago by
bharata1803
▴ 560
0
votes
7
replies
2.2k
views
DGE analysis suggestion : linearity between TF and target gene expression level
RNA-seq
updated 16 months ago by
Ram
43k • written 8.9 years ago by
bharata1803
▴ 560
1
vote
5
replies
3.4k
views
p53 upregulated in cancer cell line
gene
RNA-seq
p53
updated 16 months ago by
Ram
43k • written 8.9 years ago by
bharata1803
▴ 560
0
votes
1
reply
1.9k
views
Transcription regulatory network and gene pathway
genome
gene
updated 16 months ago by
Ram
43k • written 8.9 years ago by
bharata1803
▴ 560
3
votes
2
replies
3.3k
views
Gene name to Ensembl ID
ensembl
gene
updated 16 months ago by
Ram
43k • written 8.9 years ago by
bharata1803
▴ 560
0
votes
6
replies
2.2k
views
Get accumulated gene expression from alternative splicing in DESeq2
RNA-Seq
DESeq2
updated 16 months ago by
Ram
43k • written 8.9 years ago by
bharata1803
▴ 560
0
votes
4
replies
2.3k
views
Detect variation in promoter region from Exome-seq and RNA-seq
genome
snp
RNA-seq
updated 16 months ago by
Ram
43k • written 9.0 years ago by
bharata1803
▴ 560
6
votes
5
replies
5.8k
views
Ensembl Hg38 dna, dna_rm, and dna_sm
ensembl
alignment
sequencing
updated 13 months ago by
e.r.zakiev
▴ 210 • written 9.0 years ago by
bharata1803
▴ 560
0
votes
10
replies
2.6k
views
eXpress error gene length different
eXpress
rna-seq
updated 22 months ago by
Ram
43k • written 9.0 years ago by
bharata1803
▴ 560
1
vote
3
replies
3.1k
views
Question about multi FASTA input for eXpress
RNA-Seq
eXpress
updated 22 months ago by
Ram
43k • written 9.0 years ago by
bharata1803
▴ 560
0
votes
16
replies
4.3k
views
Count read with summarizeOverlaps result 0 for all sample
RNA-Seq
updated 22 months ago by
Ram
43k • written 9.1 years ago by
bharata1803
▴ 560
1
vote
4
replies
3.1k
views
Processng cuffnorm output
RNA-Seq
cufflinks
updated 22 months ago by
Ram
43k • written 9.1 years ago by
bharata1803
▴ 560
1
vote
3
replies
6.2k
views
From cuffnorm to DESeq
Bioconductor
cufflinks
RNA-Seq
updated 22 months ago by
Ram
43k • written 9.1 years ago by
bharata1803
▴ 560
2
votes
10
replies
3.3k
views
Gene expression level with RNA-seq
RNA-Seq
tophat
cufflinks
updated 22 months ago by
Ram
43k • written 9.1 years ago by
bharata1803
▴ 560
0
votes
0
replies
2.2k
views
Analysis between RNA-seq and BS-seq data
RNA-Seq
BS-Seq
9.1 years ago by
bharata1803
▴ 560
1
vote
6
replies
3.8k
views
Human Genome reference
next-gen
bowtie
bs-seq
genome
updated 24 months ago by
Ram
43k • written 9.2 years ago by
bharata1803
▴ 560
0
votes
2
replies
1.7k
views
BSSeq alignment algorithm/software
alignment
next-gen
methylation
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
bharata1803
▴ 560
0
votes
0
replies
1.5k
views
Current status of Microarray based technologies
microarray
sequencing
gene
R
updated 14 months ago by
Ram
43k • written 9.3 years ago by
bharata1803
▴ 560
91 results • Page
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