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questions
0
votes
0
replies
255
views
Meta analysis using METAL
gwas
METAL
updated 3 months ago by
Ram
43k • written 3 months ago by
khn
▴ 130
0
votes
0
replies
358
views
Which is the minor allele in ped file in plink?
plink
updated 11 months ago by
GenoMax
142k • written 11 months ago by
khn
▴ 130
0
votes
0
replies
478
views
merge bfiles with different allele format by plink
plink
merge
bfile
SNP
2.6 years ago by
khn
▴ 130
0
votes
0
replies
779
views
Many mismatch allele for meta analysis by plink
SNP
snp
genome
gene
3.5 years ago by
khn
▴ 130
2
votes
1
reply
966
views
FINEMAP - output files
SNP
gene
updated 3.9 years ago by
christian.benner
▴ 20 • written 4.0 years ago by
khn
▴ 130
1
vote
1
reply
861
views
How to calculate frequencies of SNPs after meta-analysis by plink?
SNP
genome
sequencing
updated 10 months ago by
Ram
43k • written 4.0 years ago by
khn
▴ 130
1
vote
1
reply
2.1k
views
Meta analysis by plink
SNP
genome
updated 10 months ago by
Ram
43k • written 4.0 years ago by
khn
▴ 130
1
vote
1
reply
859
views
Adding dosage for a SNP as a covariate to a phenotype file
SNP
genome
gene
updated 4.0 years ago by
Lemire
▴ 940 • written 4.0 years ago by
khn
▴ 130
0
votes
1
reply
1.3k
views
low genomic inflation factor
SNP
genome
sequencing
4.1 years ago by
khn
▴ 130
12
votes
15
replies
20k
views
10 follow
Merging bed bim fam files from chromosome 1 to 22 at one time
SNP
genome
snp
updated 4.2 years ago by
Shicheng Guo
★ 9.4k • written 6.1 years ago by
khn
▴ 130
3
votes
6
replies
895
views
To keep the model of minimum p-value from the file
SNP
gene
4.3 years ago by
khn
▴ 130
1
vote
2
replies
884
views
Logistic regression by allelic model in plink2
SNP
genome
sequence
plink
updated 4.3 years ago by
chrchang523
10k • written 4.3 years ago by
khn
▴ 130
0
votes
2
replies
676
views
Epistatic effect for two alleles
gene
SNP
updated 4.7 years ago by
Biological information research group of Harbin m…
▴ 10 • written 4.7 years ago by
khn
▴ 130
1
vote
0
replies
619
views
Population stratification analysis for a small candidate gene case control study
SNP
updated 10 months ago by
Ram
43k • written 4.7 years ago by
khn
▴ 130
0
votes
0
replies
1.1k
views
nlme package for Multilevel approach
R
r
4.9 years ago by
khn
▴ 130
0
votes
0
replies
561
views
Equivalence test for multiple independent groups
r
R
4.9 years ago by
khn
▴ 130
0
votes
6
replies
4.2k
views
Adding p-value to box plot
R
4.9 years ago by
khn
▴ 130
0
votes
0
replies
559
views
power calculation for case vs tolerant control
SNP
genome
snp
gene
5.1 years ago by
khn
▴ 130
2
votes
4
replies
3.9k
views
Binary to DNA sequence
SNP
genome
sequence
plink
updated 5.3 years ago by
zx8754
11k • written 6.9 years ago by
khn
▴ 130
7
votes
5
replies
5.6k
views
Plotting two ROC curves
R
updated 5.3 years ago by
Jean-Karim Heriche
27k • written 5.3 years ago by
khn
▴ 130
4
votes
2
replies
3.2k
views
Sample size calculation for GWAS (fixed number of controls)
SNP
snp
updated 5.3 years ago by
Kevin Blighe
87k • written 5.3 years ago by
khn
▴ 130
1
vote
2
replies
1.4k
views
--condition-list "file" by plink
plink
SNP
updated 10 months ago by
Ram
43k • written 5.6 years ago by
khn
▴ 130
0
votes
3
replies
1.9k
views
Interpretation of assoc.logistic in plink
SNP
genome
plink
updated 5.6 years ago by
zx8754
11k • written 5.6 years ago by
khn
▴ 130
0
votes
4
replies
1.5k
views
How to change ID of SNP in one file to adjust to the other file?
gene
SNP
genome
updated 10 months ago by
Ram
43k • written 6.0 years ago by
khn
▴ 130
0
votes
0
replies
1.1k
views
When to supsect flips after merging two datasets by plink?
SNP
snp
gene
updated 5.9 years ago by
GenoMax
142k • written 5.9 years ago by
khn
▴ 130
1
vote
0
replies
2.3k
views
Inflated qq plot and genomic inflation est. lambda
gene
SNP
genome
updated 10 months ago by
Ram
43k • written 5.9 years ago by
khn
▴ 130
4
votes
8
replies
1.4k
views
How to know important SNPs?
SNP
snp
gene
5.9 years ago by
khn
▴ 130
0
votes
0
replies
802
views
How many SNPs could be excluded from the analysis?
SNP
snp
gene
5.9 years ago by
khn
▴ 130
3
votes
1
reply
1.5k
views
Triallelic variant - GWAS
SNP
snp
gene
plink
updated 5.9 years ago by
chrchang523
10k • written 5.9 years ago by
khn
▴ 130
1
vote
4
replies
1.3k
views
Can we skip --mind?
SNP
genome
snp
gene
plink
updated 6.0 years ago by
chrchang523
10k • written 6.0 years ago by
khn
▴ 130
3
votes
7
replies
13k
views
Plink-handling multiallelic variant to merge two datasets
SNP
genome
gene
snp
updated 6.0 years ago by
Kevin Blighe
87k • written 6.0 years ago by
khn
▴ 130
0
votes
0
replies
1.5k
views
Combining two bed bim fam files - genotyped with different panels
SNP
genome
snp
gene
updated 6.0 years ago by
GenoMax
142k • written 6.0 years ago by
khn
▴ 130
1
vote
1
reply
1.5k
views
How to know which dot is which SNP in Locus zoom
SNP
genome
snp
updated 6.1 years ago by
WouterDeCoster
47k • written 6.1 years ago by
khn
▴ 130
3
votes
1
reply
1.9k
views
SNP2HLA - how can I get the results of all defined markers?
SNP
genome
gene
6.5 years ago by
khn
▴ 130
4
votes
2
replies
1.3k
views
SNP2HLA - Possible to conduct with low memory?
SNP
genome
snp
gene
7.0 years ago by
khn
▴ 130
0
votes
2
replies
1.1k
views
Where to add --allow-no-sex in MakeReference (SNP2HLA)
SNP
genome
gene
updated 7.1 years ago by
Philipp Bayer
8.4k • written 7.1 years ago by
khn
▴ 130
0
votes
0
replies
1.1k
views
How to assign star alleles for CYP2D6 when we have only the results of SNPs except for CYP2D6*5?
SNP
genome
gene
7.1 years ago by
khn
▴ 130
3
votes
4
replies
2.0k
views
How to merge two dosage files?
SNP
genome
updated 7.2 years ago by
Pierre Lindenbaum
161k • written 7.2 years ago by
khn
▴ 130
3
votes
6
replies
1.8k
views
CYP2D6 haplotype reconstruction
SNP
genome
gene
updated 7.2 years ago by
raunakms
★ 1.1k • written 7.2 years ago by
khn
▴ 130
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