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0
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13
replies
2.0k
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Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cell Ranger.
fixed-RNA-profiling chromium cellranger scFFPE
updated 9 months ago by ▴ 70 • written 10 months ago by ★ 2.9k
0
votes
2
replies
786
views
About inconsistent cell counts per samples obtained in small nuclear RNAseq data.
Seurat QC Single-Cell
15 months ago by bk11 ★ 2.9k
3
votes
2
replies
4.3k
views
How to add Seurat Object name in DimPlot title?
Seurat R
updated 2.7 years ago by 13k • written 2.7 years ago by ★ 2.9k
1
vote
1
reply
859
views
How to perform custom annotation using garfield_annotate_uk10k.sh script in GARFIELD tool?
R bash awk GWAS
updated 9 weeks ago by 44k • written 3.4 years ago by ★ 2.9k
3
votes
8
replies
2.7k
views
combine columns from multiple files
bash
updated 4.8 years ago by ▴ 100 • written 5.8 years ago by ★ 2.9k
1
vote
4
replies
2.6k
views
cvnkit: what is the problem here?
CNV NGS
updated 5.1 years ago by 20 • written 6.9 years ago by ★ 2.9k
2
votes
13
replies
2.5k
views
Extract gene lists using two files
Unix awk shell script
updated 5.2 years ago by 20 • written 6.9 years ago by ★ 2.9k
1
vote
3
replies
3.8k
views
Problem with newSCESet(countData=all.counts) function
single cell experiment single cell RNA seq
updated 5.6 years ago by 5.8k • written 5.6 years ago by ★ 2.9k
1
vote
10
replies
3.7k
views
bedtools complement error
bedtools
updated 5.7 years ago by 35k • written 5.7 years ago by ★ 2.9k
2
votes
6
replies
2.0k
views
How to identify RNA-seq mapped reads to reference genome but not identified by featurecounts of Subread package?
RNA-Seq featureCounts HISAT2
updated 5.7 years ago by ★ 4.1k • written 5.8 years ago by ★ 2.9k
5
votes
17
replies
3.1k
views
awk and sed in bash script and no output
bash sed awk
updated 5.8 years ago by 35k • written 5.8 years ago by ★ 2.9k
12
votes
12
replies
1.7k
views
Add text in somewhere middle of line using information from the same line in file.
sed awk unix
updated 5.9 years ago by 21k • written 5.9 years ago by ★ 2.9k
0
votes
5
replies
1.4k
views
Heatmap using publicly available Chip-Seq data
ChIP-Seq heatmap bigBed bigWig Blueprint
5.9 years ago by bk11 ★ 2.9k
1
vote
3
replies
1.0k
views
Calculating average using information from three different columns of a file.
Unix R Python
updated 5.9 years ago by 12k • written 5.9 years ago by ★ 2.9k
1
vote
3
replies
3.4k
views
Quantile Normalization in R and output data
R Data normalization
5.9 years ago by bk11 ★ 2.9k
8
votes
3
replies
2.2k
views
How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding RNA?
bedops bedtools awk sed bash
updated 6.5 years ago by 35k • written 6.5 years ago by ★ 2.9k
1
vote
5
replies
1.7k
views
Extracting genes from one file using coordinate from second file
awk bash bedoops
updated 6.8 years ago by 35k • written 6.8 years ago by ★ 2.9k
0
votes
3
replies
3.3k
views
Circos image for Copy Number Variation
CNV Circos image
updated 6.9 years ago by ▴ 290 • written 6.9 years ago by ★ 2.9k
7
votes
7
replies
6.0k
views
Compare between two columns of two different files and print common
awk bash
updated 3.1 years ago by 88k • written 6.9 years ago by ★ 2.9k
0
votes
0
replies
1.1k
views
VISUALIZING SPECIFIED REGIONS using CNVnator
CNV
6.9 years ago by bk11 ★ 2.9k
0
votes
2
replies
2.4k
views
How to find target genes of long non coding RNA
RNA-Seq
updated 7.0 years ago by 47k • written 7.0 years ago by ★ 2.9k
0
votes
3
replies
3.3k
views
About bedtools closest command line output understanding
RNA-Seq next-gen
updated 7.0 years ago by 104k • written 7.0 years ago by ★ 2.9k
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