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questions
1
vote
2
replies
595
views
Liftedover vcf header/contig compatibility
crossmap
vcf
bcftools
liftover
contig
updated 8 months ago by
Giulio Genovese
▴ 390 • written 8 months ago by
Kermit
▴ 90
0
votes
3
replies
770
views
Removing overrepresented sequences in paired end RNA-seq
cutadapt
rna-seq
trimgalore
updated 9 months ago by
Ram
43k • written 9 months ago by
Kermit
▴ 90
2
votes
1
reply
478
views
Is RNA-Seq well suited for studying pseudogenes and lncRNA?
rna
ncRNA
transcriptome
pseudogene
rna-seq
updated 10 months ago by
rpolicastro
13k • written 10 months ago by
Kermit
▴ 90
0
votes
7
replies
1.5k
views
Why are some WES VCFs larger than others?
WES
sequencing
genomics
NGS
exome
10 months ago by
Kermit
▴ 90
0
votes
3
replies
662
views
How many basepairs are genes padded by in WES?
NGS
sequencing
WES
exome
updated 14 months ago by
Prash
▴ 270 • written 14 months ago by
Kermit
▴ 90
3
votes
4
replies
1.0k
views
Annotate list of Ensembl genes
gene
functional-annotation
updated 18 months ago by
Laura Luebbert
▴ 450 • written 20 months ago by
Kermit
▴ 90
2
votes
2
replies
571
views
Do LoF/GoF count toward transcript count?
expression
rna-seq
rna
19 months ago by
Kermit
▴ 90
1
vote
2
replies
839
views
TCGA - Is vital_status subject to follow_up duration?
phenotype
cohort
prognostic
survival
tcga
20 months ago by
Kermit
▴ 90
2
votes
8
replies
1.3k
views
If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
RNA
miRNA
sequencing
RNA-seq
13 months ago by
Kermit
▴ 90
2
votes
7
replies
1.1k
views
Gene types to use for RNA counts case-control
rna
rnaseq
tpm
updated 20 months ago by
i.sudbery
19k • written 20 months ago by
Kermit
▴ 90
4
votes
5
replies
1.0k
views
Reference counts for RNA-seq
expression
rna
rna-seq
tpm
transcripts
updated 20 months ago by
ATpoint
82k • written 20 months ago by
Kermit
▴ 90
3
votes
3
replies
812
views
What are GL*.* values in chr column of rna seq counts?
reference
sequencing
rna-seq
rna
updated 20 months ago by
GenoMax
141k • written 20 months ago by
Kermit
▴ 90
8
votes
4
replies
1.1k
views
Are small insertions always single-stranded?
indel
updated 3.5 years ago by
Biostar
20 • written 4.8 years ago by
Kermit
▴ 90
1
vote
0
replies
969
views
How do BOLT and SAIGE calculate LD?... with PLINK LD?
plink
bolt
saige
gwas
4.3 years ago by
Kermit
▴ 90
0
votes
2
replies
698
views
Noncoding annotations for WGS?
noncoding
intron
annotation
4.4 years ago by
Kermit
▴ 90
6
votes
5
replies
1.8k
views
VCF - does mother or father come first in the comma separated ALT
vcf
gvcf
heterozygous
updated 4.5 years ago by
Biostar
20 • written 4.8 years ago by
Kermit
▴ 90
0
votes
2
replies
1.1k
views
How rare are somatic mutations?
tumor
mutect
varscan
somatic
SNP
4.5 years ago by
Kermit
▴ 90
0
votes
1
reply
1.2k
views
Are SV tools as thorough in CNV detection as CNVkit?
cnv
sv
cnvkit
manta
parliament
4.7 years ago by
Kermit
▴ 90
8
votes
4
replies
3.0k
views
VCF - what are overlapping variants?
vcf
updated 4.8 years ago by
Pierre Lindenbaum
161k • written 4.8 years ago by
Kermit
▴ 90
2
votes
3
replies
969
views
gVCF what is a "break-end replacement"
gvcf
4.8 years ago by
Kermit
▴ 90
0
votes
0
replies
1.2k
views
PubSub or workflows or both?
workflow
pubsub
events
python
5.4 years ago by
Kermit
▴ 90
3
votes
1
reply
916
views
Does vcf spec indicate cnv duplication of snps?
vcf
cnv
snp
snv
ngs
5.8 years ago by
Kermit
▴ 90
17
votes
9
replies
2.8k
views
6 follow
Workflows! Where is the code?
cwl
wdl
workflows
updated 5.9 years ago by
Michael R. Crusoe
★ 1.9k • written 5.9 years ago by
Kermit
▴ 90
4
votes
2
replies
1.5k
views
Encrypting BAM files
gdpr
hipaa
encryption
updated 6.1 years ago by
Biostar
20 • written 6.2 years ago by
Kermit
▴ 90
24 results • Page
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