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0
votes
5
replies
1.2k
views
Best input sample (CNV)
ChIP-Seq
updated 4.0 years ago by 20 • written 6.5 years ago by ▴ 600
0
votes
1
reply
1.8k
views
User guide of FunPat
FunPat
updated 4.3 years ago by • 0 • written 7.5 years ago by ▴ 600
4
votes
3
replies
2.9k
views
SNP zygosity from RNA-Seq data (BAM file)
SNP RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 600
9
votes
7
replies
8.8k
views
Generate Random Genomic Regions
chip-seq
updated 5.2 years ago by ▴ 110 • written 10.8 years ago by ▴ 600
7
votes
4
replies
20k
views
How To Compute The Significance Of The Overlap Of The Size Of The Intersection Of Two Gene Sets.
pathway statistics
updated 22 months ago by 43k • written 10.7 years ago by ▴ 600
5
votes
7
replies
10k
views
Rcircos: Need Guidance
chip-seq r
updated 5.8 years ago by ▴ 110 • written 10.7 years ago by ▴ 600
7
votes
4
replies
4.0k
views
Downloading genomic interval for hg38
ChIP-Seq
updated 6.8 years ago by 35k • written 6.8 years ago by ▴ 600
4
votes
3
replies
1.6k
views
Binning the genomic regions and counting reads
Bed tool bash
updated 7.1 years ago by ★ 3.4k • written 7.1 years ago by ▴ 600
3
votes
3
replies
1.8k
views
Identifying DEG from time course data without condition
DESeq EdgeR RNA-Seq
updated 7.4 years ago by 8.3k • written 7.4 years ago by ▴ 600
4
votes
6
replies
2.0k
views
Ensembl ID conversion for a specific build
GeneID-Conversion Ensembl
updated 7.5 years ago by ★ 5.2k • written 7.5 years ago by ▴ 600
0
votes
7
replies
2.0k
views
Identification of 3'UTR of a gene not yet discovered in pig
RNA-Seq ChIP-Seq Sequence-Analysis Genome-Analysis
updated 7.6 years ago by ▴ 610 • written 7.6 years ago by ▴ 600
19
votes
5
replies
25k
views
Hypergeometric Test On Gene Set
r statistics
updated 14 months ago by 43k • written 10.3 years ago by ▴ 600
2
votes
3
replies
7.5k
views
Quantification of RNA-Seq bam files (STAR + HTSeq count)
RNA-Seq HTSeq_count STAR
updated 21 months ago by 43k • written 8.3 years ago by ▴ 600
3
votes
6
replies
9.0k
views
How to normalise read count per gene
RNA-Seq
updated 21 months ago by 43k • written 8.3 years ago by ▴ 600
4
votes
5
replies
5.0k
views
Heatmap of Differentially Expressed Genes
RNA-Seq R heatmap
updated 21 months ago by 43k • written 8.4 years ago by ▴ 600
0
votes
0
replies
1.8k
views
Practical approaches to constructing regulatory networks using NGS data (ChIP and/or RNA Seq)
RNA-Seq ChIP-Seq Network Cytoscape
8.8 years ago by ChIP ▴ 600
10
votes
7
replies
7.7k
views
To get genes for each clusters from heatmap
heatmap R
updated 17 months ago by 43k • written 8.8 years ago by ▴ 600
0
votes
1
reply
1.8k
views
Suggestion Needed For Mirna Expression Data
mirna gene-expression
updated 8.9 years ago by 20 • written 11.6 years ago by ▴ 600
2
votes
6
replies
3.3k
views
Paired end data loaded into geo as single end runs ... How to extraxct the data
Samtools RNA-Seq Picard
updated 16 months ago by 43k • written 9.4 years ago by ▴ 600
14
votes
18
replies
14k
views
10 follow
Plotting Reads Around Tss
chip-seq
updated 16 months ago by 43k • written 10.5 years ago by ▴ 600
3
votes
3
replies
8.9k
views
Trimming read length & quality in a FASTQ file
RNA-Seq next-gen
updated 14 months ago by 43k • written 9.0 years ago by ▴ 600
1
vote
2
replies
1.5k
views
Can a bioinformatics analysis based on 2 patient samples be published
next-gen Publications
updated 14 months ago by 43k • written 9.0 years ago by ▴ 600
14
votes
14
replies
4.4k
views
Heatmap to identify differential regions between 2 groups
heatmap R
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 600
1
vote
4
replies
2.4k
views
Converting Solexa eland to Solexa fastq
perl python awk R
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 600
11
votes
7
replies
13k
views
List Of Genes Involved In Metabolic Pathway
pathway enrichment
updated 2.1 years ago by 43k • written 10.9 years ago by ▴ 600
4
votes
3
replies
3.5k
views
Error while converting FastqToSam
Fastq Bam Picard
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 600
4
votes
2
replies
9.0k
views
Transforming Beta values to M values
DNA-Methylation
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 600
0
votes
0
replies
2.3k
views
Difference between the PFam domain information from UCSC and PDB site
Protein domains SNPs
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 600
5
votes
11
replies
9.0k
views
Copy Number Variation from paired end RNA-Seq data
SNP RNA-Seq CNV
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 600
17
votes
12
replies
31k
views
9 follow
GT and GL fields in VCF file
SNP VCF
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 600
7
votes
12
replies
2.8k
views
Normalising RPKMs from ribo zero and smarter kit
RNA-Seq RPKM
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 600
1
vote
3
replies
5.5k
views
Interpreting TCGA 450K data
TCGA Methylation 450K
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 600
16
votes
10
replies
12k
views
7 follow
Heatmap In R With Large Datasets
r heatmap
updated 2.3 years ago by 43k • written 10.1 years ago by ▴ 600
0
votes
0
replies
1.3k
views
SNPs to DNA methylation and identification of significant variants
DNA-methylation SNP
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 600
9
votes
3
replies
3.5k
views
Splitting chromosomes in bins of 100kb
ChIP-Seq next-gen
updated 2.4 years ago by 43k • written 9.7 years ago by ▴ 600
2
votes
2
replies
6.3k
views
Counting number of reads in my peak file
ChIP-Seq Bamtools Python
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 600
11
votes
8
replies
4.7k
views
Differential Regions In Histone Modification
chip-seq
updated 10.0 years ago by ▴ 220 • written 10.5 years ago by ▴ 600
1
vote
1
reply
1.6k
views
Genome Information From Bam
genomics chip-seq bam
updated 10.1 years ago by 161k • written 10.1 years ago by ▴ 600
8
votes
4
replies
4.2k
views
Regions Of Cpg Island In Hg18 And Hg19 In Gff Format
genomics perl python
updated 10.1 years ago by 14k • written 10.1 years ago by ▴ 600
11
votes
8
replies
5.5k
views
9 follow
Lesson Plan To Teach Python For Absolute Beginners
python
updated 14 months ago by 43k • written 10.1 years ago by ▴ 600
1
vote
3
replies
2.7k
views
Parser For Converting Ucsc Tables Into Gff3 Format
python genome
updated 10.4 years ago by 26k • written 10.4 years ago by ▴ 600
2
votes
3
replies
4.2k
views
Normalizing Bam Files
chip-seq normalization
updated 10.4 years ago by 26k • written 10.4 years ago by ▴ 600
2
votes
6
replies
7.0k
views
Normalizing Bam Files
chip-seq
updated 10.5 years ago by 5.2k • written 10.5 years ago by ▴ 600
7
votes
6
replies
6.1k
views
Tool Or Technique To Find Co-Occuring Motifs Within Genomic Intervals That Correspond To Tf Binding Regions.
chip-seq
updated 10 months ago by 43k • written 10.6 years ago by ▴ 600
6
votes
5
replies
3.5k
views
Confused With Peaks And Motifs
chip-seq
updated 10.6 years ago by 6.0k • written 10.6 years ago by ▴ 600
6
votes
3
replies
4.9k
views
Ideas For Presenting Pathway Enrichment
visualization
updated 11.0 years ago by ★ 1.1k • written 11.0 years ago by ▴ 600
1
vote
2
replies
2.4k
views
Comparing Subnetworks And Identifying Crucial Nodes In And Across Subnetworks
cytoscape network
updated 11.0 years ago by ▴ 680 • written 11.0 years ago by ▴ 600
8
votes
2
replies
3.4k
views
High Confidence Peaks From A Set Of Replicates
chip-seq peak-calling
updated 11.2 years ago by ★ 2.8k • written 11.2 years ago by ▴ 600
1
vote
4
replies
3.4k
views
Annotating Peaks To Ensemble Build
chip-seq python perl
11.2 years ago by ChIP ▴ 600
11
votes
4
replies
2.5k
views
Splitting Genelist Into Tf Coding Genes And Nontf Coding Genes
transcription-factor genomics
updated 14 months ago by 43k • written 11.6 years ago by ▴ 600
51 results • Page 1 of 2
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