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1
vote
8
replies
3.3k
views
cutadapt error problem
next-gen cutadapt
updated 5 weeks ago by 43k • written 5.6 years ago by ▴ 20
7
votes
6
replies
1.9k
views
7 follow
batch renaming FASTQ files
fastq rename batch
updated 15 months ago by 8.5k • written 3.2 years ago by ▴ 20
1
vote
1
reply
632
views
extract entire header from BED file to FASTA
bedtools getfasta
updated 2.7 years ago by ★ 1.4k • written 2.7 years ago by ▴ 20
1
vote
1
reply
975
views
bbmap seal.sh error
seal.sh bbmap
updated 2.8 years ago by 35k • written 2.8 years ago by ▴ 20
1
vote
1
reply
1.1k
views
single- indexed sequenced as paired end
Chip-seq NGS Illumina
updated 3.0 years ago by 142k • written 3.0 years ago by ▴ 20
2
votes
5
replies
2.0k
views
align interleaved fastq file
interleaved fastq align
updated 3.1 years ago by 142k • written 3.1 years ago by ▴ 20
2
votes
13
replies
1.4k
views
complexheatMap runtime error
Complexheatmap R
updated 3.2 years ago by 20 • written 3.4 years ago by ▴ 20
3
votes
3
replies
852
views
Read detection with pattern in paired end FASTQ file
FASTQ paired end Awk
updated 3.3 years ago by 142k • written 3.3 years ago by ▴ 20
6
votes
12
replies
1.9k
views
bowtie2 shell script
Bowtie2 Shellscript
updated 3.4 years ago by 82k • written 3.4 years ago by ▴ 20
0
votes
4
replies
672
views
bowtie2 making new indices
bowtie2 new indices
3.4 years ago by amitpande74 ▴ 20
3
votes
14
replies
1.7k
views
bedtools multiple BAM files
Bedtools shellscript BAMtoBED
3.5 years ago by amitpande74 ▴ 20
0
votes
1
reply
656
views
fasta file extraction
fasta sed awk
updated 3.5 years ago by 21k • written 3.5 years ago by ▴ 20
9
votes
11
replies
2.0k
views
7 follow
add nucleotide in the begining of fasta sequences
fasta sequence add nucleotide
updated 3.5 years ago by 8.5k • written 3.5 years ago by ▴ 20
7
votes
4
replies
1.1k
views
grep -v command
grep chr1
updated 3.8 years ago by 161k • written 3.8 years ago by ▴ 20
1
vote
1
reply
3.4k
views
conda install homer
conda homer
3.9 years ago by amitpande74 ▴ 20
1
vote
1
reply
1.7k
views
salmon shell script to automate quant
shellscript salmon
updated 4.0 years ago by 82k • written 4.0 years ago by ▴ 20
2
votes
3
replies
1.5k
views
bulkdownload fastq files from ENA
fastq ENA
updated 13 months ago by 43k • written 4.0 years ago by ▴ 20
1
vote
6
replies
1.4k
views
BLAT error while execution
blat error
updated 4.1 years ago by 82k • written 4.1 years ago by ▴ 20
0
votes
8
replies
968
views
bowtie2 aligment problems
alignment next-gen bowtie2
4.1 years ago by amitpande74 ▴ 20
1
vote
2
replies
683
views
fetching fastq files for all samples
Fastq
updated 13 months ago by 43k • written 4.3 years ago by ▴ 20
0
votes
0
replies
825
views
Chip exo data analysis
Chip exo Macs2 GEM
4.5 years ago by amitpande74 ▴ 20
0
votes
0
replies
574
views
HMG box Chipseq
ChIP-Seq
4.6 years ago by amitpande74 ▴ 20
3
votes
2
replies
1.0k
views
extracting strand information from BAM to BED
BEDTOOLS BAM
updated 13 months ago by 43k • written 4.7 years ago by ▴ 20
7
votes
8
replies
1.6k
views
grep DNA after a pattern
DNAseq Grep
updated 4.7 years ago by 8.3k • written 4.7 years ago by ▴ 20
1
vote
2
replies
1.2k
views
chimeric transcripts detection tool
RNA-Seq
updated 5.5 years ago by ▴ 280 • written 5.5 years ago by ▴ 20
1
vote
2
replies
1.7k
views
gene expression classification
RNA-Seq
updated 7.0 years ago by ▴ 190 • written 7.0 years ago by ▴ 20
2
votes
3
replies
4.5k
views
extracting reads from BAM files for gene coordinates Tx start Txs end
RNA-Seq samtools
updated 23 months ago by 43k • written 9.1 years ago by ▴ 20
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