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1
vote
4
replies
832
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compare ChIP-seq datasets in two cell lines
ChIP-seq
2.2 years ago by Bogdan ★ 1.4k
19
votes
10
replies
12k
views
7 follow
workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
pipeline language
updated 24 months ago by 14k • written 5.5 years ago by ★ 1.4k
0
votes
1
reply
637
views
4C packages
4C
updated 2.2 years ago by 4.2k • written 2.2 years ago by ★ 1.4k
5
votes
4
replies
1.9k
views
6 follow
bioinformatics pipelines on GCP or AWS
RNA-seq google ChIP-seq cloud
updated 2.1 years ago by 4.2k • written 2.6 years ago by ★ 1.4k
1
vote
1
reply
901
views
shiny apps for DEseq2, edgeR, limma
shiny limma DEseq2 edgeR
updated 2.3 years ago by ▴ 30 • written 2.3 years ago by ★ 1.4k
2
votes
1
reply
2.7k
views
heatmap of genes pseudotime in monocle3
monocle2 monocle3 and
10 weeks ago by Bogdan ★ 1.4k
2
votes
0
replies
2.7k
views
Answer: Answer: heatmap of genes pseudotime in monoclle3
2.3 years ago by Bogdan ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: Comment: monocle3 and spData
2.5 years ago by Bogdan ★ 1.4k
0
votes
2
replies
1.1k
views
monocle3 and spData
monocle3
2.5 years ago by Bogdan ★ 1.4k
0
votes
0
replies
757
views
convert monocle3 into monocle2 cds
monocle
2.5 years ago by Bogdan ★ 1.4k
1
vote
1
reply
492
views
scanning sequences or promoter sequences with specific motifs
motifs
updated 2.6 years ago by 21k • written 2.6 years ago by ★ 1.4k
0
votes
0
replies
1.0k
views
Comment: Comment: batch correction in ChIp-seq data
2.7 years ago by Bogdan ★ 1.4k
0
votes
1
reply
1.0k
views
Comment: Comment: batch correction in ChIp-seq data
2.7 years ago by Bogdan ★ 1.4k
0
votes
4
replies
1.0k
views
batch correction in ChIp-seq data
batch ChIP-seq
updated 2.7 years ago by 13k • written 2.7 years ago by ★ 1.4k
1
vote
3
replies
1.0k
views
extracting a gene from a gmt file
gmt pathway
updated 17 months ago by 43k • written 2.7 years ago by ★ 1.4k
0
votes
1
reply
772
views
downloading fastq files from galaxy
galaxy
updated 2.8 years ago by 14k • written 2.8 years ago by ★ 1.4k
0
votes
0
replies
590
views
about the batch correction and integration and normalization of scRNA-seq data
normalization scRNA-seq
3.0 years ago by Bogdan ★ 1.4k
6
votes
3
replies
1.1k
views
recent Hi-C databases
hi-C 4C 3C
updated 3.0 years ago by ▴ 190 • written 3.3 years ago by ★ 1.4k
3
votes
1
reply
690
views
HI-C analysis in the cloud environment
HI-C
updated 3.1 years ago by ▴ 190 • written 3.2 years ago by ★ 1.4k
0
votes
1
reply
690
views
Forum: Apache Spark on AWS
apachespark
updated 3.1 years ago by 22k • written 3.1 years ago by ★ 1.4k
0
votes
0
replies
993
views
Comment: C: to annotate BEDPE files
3.1 years ago by Bogdan ★ 1.4k
0
votes
3
replies
993
views
to annotate BEDPE files
bedtools annotate
updated 7 months ago by ▴ 760 • written 3.1 years ago by ★ 1.4k
0
votes
0
replies
459
views
Comment: C: a simple question about file permissions
3.1 years ago by Bogdan ★ 1.4k
0
votes
2
replies
459
views
a simple question about file permissions
SLURM cluster operating system
3.1 years ago by Bogdan ★ 1.4k
0
votes
1
reply
979
views
CUT&TAG and CUT&RUN
ChIP-Seq
updated 3.2 years ago by 19k • written 3.2 years ago by ★ 1.4k
1
vote
5
replies
2.2k
views
scRNA-seq, MONOCLE3, and trajectory reconstruction, and Moran I statistics
scRNA-seq
updated 3.3 years ago by ▴ 40 • written 3.5 years ago by ★ 1.4k
0
votes
0
replies
2.2k
views
Comment: C: scRNA-seq, MONOCLE3, and trajectory reconstruction, and Moran I statistics
3.3 years ago by Bogdan ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: C: recent Hi-C databases
3.3 years ago by Bogdan ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: C: visualize RNA secondary/tertiary structure, and overlay the primary sequence
3.4 years ago by Bogdan ★ 1.4k
0
votes
1
reply
1.1k
views
Comment: C: visualize RNA secondary/tertiary structure, and overlay the primary sequence
3.4 years ago by Bogdan ★ 1.4k
0
votes
1
reply
1.1k
views
Comment: C: visualize RNA secondary/tertiary structure, and overlay the primary sequence
3.4 years ago by Bogdan ★ 1.4k
0
votes
6
replies
1.1k
views
visualize RNA secondary/tertiary structure, and overlay the primary sequence
RNA RNA structure visualization
3.4 years ago by Bogdan ★ 1.4k
0
votes
0
replies
4.9k
views
Comment: C: filtering the somatic variants
3.4 years ago by Bogdan ★ 1.4k
5
votes
11
replies
4.9k
views
filtering the somatic variants
SNP snp
updated 3.4 years ago by • 0 • written 8.1 years ago by ★ 1.4k
1
vote
0
replies
2.6k
views
Answer: A: NMF tools for scRNA analysis
3.4 years ago by Bogdan ★ 1.4k
0
votes
0
replies
577
views
database of human mRNA structures
RNA
3.4 years ago by Bogdan ★ 1.4k
0
votes
0
replies
650
views
predicted structure of full-length mRNA/lincRNA
sequence structure RNA
3.5 years ago by Bogdan ★ 1.4k
0
votes
0
replies
2.2k
views
Comment: C: scRNA-seq, MONOCLE3, and trajectory reconstruction, and Moran I statistics
3.5 years ago by Bogdan ★ 1.4k
1
vote
1
reply
926
views
Answer: A: Network analysis: where to start?
3.5 years ago by Bogdan ★ 1.4k
1
vote
5
replies
624
views
GO and C++
C++ GO
updated 3.6 years ago by 8.5k • written 3.6 years ago by ★ 1.4k
0
votes
0
replies
624
views
Comment: C: GO and C++
3.6 years ago by Bogdan ★ 1.4k
0
votes
3
replies
1.8k
views
scRNA-seq data at different time points
scRNA-seq
updated 3.0 years ago by • 0 • written 3.8 years ago by ★ 1.4k
0
votes
4
replies
3.4k
views
packages for displaying heatmaps of mutations etc ...
SNP
updated 3.8 years ago by ▴ 10 • written 7.6 years ago by ★ 1.4k
0
votes
0
replies
1.8k
views
Comment: C: scRNA-seq data at different time points
3.8 years ago by Bogdan ★ 1.4k
0
votes
0
replies
3.5k
views
Comment: C: computing resources for scRNA-seq analysis
3.8 years ago by Bogdan ★ 1.4k
0
votes
1
reply
3.5k
views
Comment: C: computing resources for scRNA-seq analysis
3.9 years ago by Bogdan ★ 1.4k
0
votes
0
replies
3.5k
views
Comment: C: computing resources for scRNA-seq analysis
3.9 years ago by Bogdan ★ 1.4k
0
votes
0
replies
3.5k
views
Comment: C: computing resources for scRNA-seq analysis
3.9 years ago by Bogdan ★ 1.4k
0
votes
7
replies
3.5k
views
computing resources for scRNA-seq analysis
R sequencing scRNA-seq
3.9 years ago by Bogdan ★ 1.4k
0
votes
0
replies
6.1k
views
Comment: C: about batch correction in scRNA-seq
4.0 years ago by Bogdan ★ 1.4k
386 results • Page 2 of 8
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