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How can one determine if a sample size is representative in scRNA-seq analysis?
scRNA-seq
10 weeks ago by fifty_fifty ▴ 60
0
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6
replies
468
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Find Large-scale CNVs in whole exome sequencing
WES scRNA-seq CNV
3 months ago by fifty_fifty ▴ 60
0
votes
1
reply
599
views
Transfer harmony-integrated scRNA-seq data to scanpy
scRNA-seq harmony
updated 7 months ago by ▴ 90 • written 7 months ago by ▴ 60
2
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4
replies
700
views
Subclustering of intergated cells from scRNA-seq data
scRNA-seq Seurat
7 months ago by fifty_fifty ▴ 60
2
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5
replies
1.4k
views
How to distinguish between normal and malignant epithelial cells based on CNV?
scRNA-seq r CNV infercnv CNA
updated 8 months ago by 3.9k • written 8 months ago by ▴ 60
2
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5
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2.6k
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InferCNV results interpretation
cnv scrna-seq r
updated 3 months ago by • 0 • written 8 months ago by ▴ 60
0
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3
replies
788
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Lollipop visualization of VCF (SnpEff output)
snpEff SNP WES
updated 10 months ago by 161k • written 10 months ago by ▴ 60
0
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0
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442
views
snpEff error. No CDS checked
snpEff gtf WES
11 months ago by fifty_fifty ▴ 60
0
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2
replies
596
views
Variant calling in WES vs WGS
snpEff WGS SNPs WES
updated 11 months ago by ▴ 280 • written 11 months ago by ▴ 60
7
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5
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1.1k
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RNA-seq analysis without replicates
DGE RNA-seq GSEA
updated 13 months ago by ▴ 120 • written 13 months ago by ▴ 60
0
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1
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569
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Does it make sense to analyze snRNA-seq data with low nUMI per gene?
scRNA-seq
updated 21 months ago by ▴ 800 • written 21 months ago by ▴ 60
2
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2
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599
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find pairwise transcriptional similarities between samples
RNA-seq r
updated 23 months ago by 54k • written 23 months ago by ▴ 60
0
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0
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351
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scRNA-seq benchmark data
scRNA_seq
24 months ago by fifty_fifty ▴ 60
1
vote
3
replies
694
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Aggregation of bulk RNA-seq
RNA-seq
updated 2.0 years ago by ▴ 790 • written 2.0 years ago by ▴ 60
0
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3
replies
820
views
evaluation of Seurat clustering
scRNA-seq PCA Seurat
updated 2.2 years ago by 11k • written 2.2 years ago by ▴ 60
1
vote
1
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1.6k
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How to refer to gene names in Seurat::PercentageFeatureSet()?
r seurat scRNA-seq
updated 2.3 years ago by ★ 16k • written 2.3 years ago by ▴ 60
1
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7
replies
2.3k
views
6 follow
Can't convert dog ensembl IDs into gene names
RNA-seq dog ensembl biomart
updated 2.4 years ago by ▴ 100 • written 2.4 years ago by ▴ 60
0
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1
reply
2.7k
views
how to read h5 file in Seurat if its structure is not like 10x h5 file structure?
RNA-Seq single-cell scRNA-seq Seurat R
updated 8 months ago by 43k • written 2.4 years ago by ▴ 60
0
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0
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447
views
Is it ok to use z-scores means for inter-sample comparison?
scRNA_seq RNA-seq
2.6 years ago by fifty_fifty ▴ 60
2
votes
2
replies
1.4k
views
GEO submission when I have raw data in SRA
GEO SRA scRNA-seq NCBI data
updated 2.8 years ago by 8.7k • written 2.8 years ago by ▴ 60
0
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0
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707
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RNA-seq raw counts normalization for survival analysis
survival tcga RNA-Seq r
2.8 years ago by fifty_fifty ▴ 60
3
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5
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1.0k
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Integration of two TCGA datasets
r RNA-Seq tcga survival
updated 2.9 years ago by 88k • written 2.9 years ago by ▴ 60
2
votes
5
replies
3.1k
views
How to use DEGs file for GSEA?
gsea RNA-Seq scRNA-seq Seurat
updated 3.0 years ago by • 0 • written 3.4 years ago by ▴ 60
0
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4
replies
1.8k
views
biomart returns several ensembl ids for one gene
scrna-seq ensembl biomart r
3.0 years ago by fifty_fifty ▴ 60
1
vote
0
replies
449
views
The best way to find cell differentiation path
differentiation fate biology fibroblasts scRNA-seq
3.1 years ago by fifty_fifty ▴ 60
0
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0
replies
2.8k
views
Reading count martix in scanpy
python scanpy scrna-seq seurat
3.5 years ago by fifty_fifty ▴ 60
1
vote
1
reply
1.4k
views
Merging previously merged object in Seurat
scRNA-seq Seurat single-cell R RNA-Seq
3.5 years ago by fifty_fifty ▴ 60
5
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3
replies
2.6k
views
Survival analysis based on a set of genes for TCGA data
tcga r RNA-Seq survival
updated 23 months ago by • 0 • written 3.5 years ago by ▴ 60
3
votes
5
replies
2.6k
views
Filter out mouse reads from single cell RNA-seq of PDX tumor
RNA-Seq PDX
updated 3.8 years ago by ▴ 10 • written 3.9 years ago by ▴ 60
0
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0
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1.1k
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Filtering out mouse cells based on mouse/human genes ratio
RNA-Seq scRNAseq 10x cellranger
3.8 years ago by fifty_fifty ▴ 60
2
votes
2
replies
1.7k
views
Mapping reads to combined mouse and human genome
RNA-Seq alignment STAR rna-seq
updated 3.9 years ago by 142k • written 3.9 years ago by ▴ 60
4
votes
2
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3.2k
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How to generate a mouse reference genome in STAR?
genome alignment mouse RNA-Seq STAR
updated 3.9 years ago by ▴ 230 • written 3.9 years ago by ▴ 60
0
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12
replies
2.2k
views
How to remove non protein coding genes from single cell pre-mRNA seq?
RNA-Seq scRNA cellranger
updated 4.0 years ago by ★ 1.9k • written 4.0 years ago by ▴ 60
0
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1
reply
463
views
Knowledge bases/DBs to interpret genes relationships
RNA-Seq
4.4 years ago by fifty_fifty ▴ 60
34 results • Page 1 of 1
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