Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
0
votes
1
reply
2.2k
views
Anyone Has Used Snp & Variation Suite Of Golden Helix?
snp filtering
updated 13 months ago by 36k • written 8.6 years ago by ▴ 310
4
votes
6
replies
4.7k
views
Error When Convert Mouse Snp137.Txt To .Vcf Format
convert mouse format vcf gatk variant dbsnp
updated 7 months ago by 36k • written 8.6 years ago by ▴ 310
2
votes
2
replies
3.5k
views
A Question About Pair-End Reads Alignment
alignment
updated 6.7 years ago by 20 • written 8.7 years ago by ▴ 310
15
votes
18
replies
18k
views
Vcf Sort According To Order Of The Reference File
gatk
updated 7.0 years ago by 20 • written 8.6 years ago by ▴ 310
5
votes
1
reply
4.0k
views
Overrepresented Sequences Question
qc
updated 7.4 years ago by 20 • written 8.7 years ago by ▴ 310
4
votes
7
replies
6.5k
views
How To Adjust The Chromosome Contigs Order
gatk reference dbsnp chromosome
updated 14 months ago by 145k • written 8.6 years ago by ▴ 310
4
votes
1
reply
3.7k
views
Selecting Heterozygote Calls Using Selectvariants
gatk
updated 14 months ago by 36k • written 8.5 years ago by ▴ 310
3
votes
6
replies
2.0k
views
Does Alignment Require All The Reads With The Same Length?
alignment
updated 7.8 years ago by 20 • written 8.7 years ago by ▴ 310
0
votes
2
replies
1.9k
views
The Tools For Reducing Variants
filtering vcf
updated 7.9 years ago by 20 • written 8.5 years ago by ▴ 310
3
votes
5
replies
4.8k
views
Questions About Annotation Of Mouse Exome Variants Data By Annovar
mouse annovar exome-sequencing
updated 8.5 years ago by 8.1k • written 8.6 years ago by ▴ 310
2
votes
1
reply
3.3k
views
Information Has Missed And Messed After Converting Annotated Whole-Genome Data Into Txt File
annotation conversion ngs annovar
updated 8.5 years ago by 3.4k • written 8.5 years ago by ▴ 310
2
votes
2
replies
3.6k
views
Variant Quality Score Recalibration (Vqsr) For Non-Human Genomes
gatk
8.5 years ago by Tonyzeng ▴ 310
2
votes
2
replies
3.4k
views
Selectvariants And Annotation Of Variants With Vcf Format
gatk annotation
updated 8.5 years ago by 26k • written 8.5 years ago by ▴ 310
1
vote
1
reply
1.7k
views
Is This An Error Of Ref Dbsnp?
dbsnp error variant filtering ngs
updated 8.5 years ago by 7.2k • written 8.5 years ago by ▴ 310
1
vote
3
replies
2.1k
views
A Non-Human Variants Data Analysis Error By Using Variants_Reduction.Pl
annovar
8.6 years ago by Tonyzeng ▴ 310
2
votes
3
replies
3.1k
views
Snp Calling Error By Gatk Unifiedgenotyper Program
snp gatk
8.6 years ago by Tonyzeng ▴ 310
0
votes
10
replies
4.6k
views
Reorder The Contig=<Id Of The Header Of Vcf File, How?
vcf
updated 8.6 years ago by 22k • written 8.6 years ago by ▴ 310
3
votes
1
reply
2.9k
views
Is That Necessary To Remove The Chr M And Y Of Reference File And Bam File For The Downstream Work?
bam vcf reference
updated 8.6 years ago by 12k • written 8.6 years ago by ▴ 310
15
votes
14
replies
11k
views
6 follow
A Quick Way To View Or Check The Order Of Chromosome In Bam File
bam samtools
updated 8.6 years ago by 145k • written 8.6 years ago by ▴ 310
6
votes
9
replies
3.5k
views
Need Suggestions For The Sequencing Data Analysis From Mouse Community
dbsnp reference mouse gatk vcf
updated 8.6 years ago by 49k • written 8.6 years ago by ▴ 310
8
votes
5
replies
2.6k
views
Is Igv Software The Only Available Software To Open Bam File
bam
updated 8.6 years ago by ★ 1.0k • written 8.6 years ago by ▴ 310
8
votes
5
replies
5.3k
views
Duplication Removing Using Filtering Xt:A:U, Samtools -Rmdup And Picard Markduplicates
samtools picard markduplicates
updated 8.6 years ago by 11k • written 8.6 years ago by ▴ 310
19
votes
15
replies
15k
views
Where To Download Mouse Mm10 Dbsnp Database With Vcf Format
vcf
updated 8.6 years ago by 12k • written 8.6 years ago by ▴ 310
0
votes
1
reply
2.4k
views
Mouse Dbsnp Database For Quality Score Recalibration From Gatk
dbsnp gatk mouse
8.6 years ago by Tonyzeng ▴ 310
9
votes
9
replies
6.2k
views
9 follow
Reliable Tools To Filter Vcf Format Files
vcf variant tools
updated 8.6 years ago by ▴ 90 • written 8.6 years ago by ▴ 310
2
votes
3
replies
5.4k
views
Picard Mark Duplicate Reads In Galaxy
picard markduplicates galaxy
updated 8.6 years ago by ▴ 10 • written 8.6 years ago by ▴ 310
2
votes
4
replies
3.4k
views
Interval Format Variant Files Convertion Problems And Igv And Annotation Application
variant-calling igv format
updated 8.6 years ago by 101k • written 8.6 years ago by ▴ 310
0
votes
2
replies
3.8k
views
Is It Necessary To Remove Duplications After Bwa Alignment?
bwa
8.6 years ago by Tonyzeng ▴ 310
2
votes
6
replies
3.9k
views
Bwa Alignment And Input Pair-End Format, Does Fastq Encoding Of The Input Matter?
bwa alignment format
updated 8.6 years ago by 93k • written 8.6 years ago by ▴ 310
1
vote
8
replies
17k
views
Bwa Index Output And Bwa Aln Problem
bwa
updated 8.6 years ago by 12k • written 8.6 years ago by ▴ 310
1
vote
1
reply
2.5k
views
How To Know The Progress Of Program Running Like Bwa Index Or Aln?
bwa
updated 8.7 years ago by 101k • written 8.7 years ago by ▴ 310
1
vote
2
replies
2.3k
views
Snp Calling And Annotation
annotation
updated 8.7 years ago by 13k • written 8.7 years ago by ▴ 310
1
vote
4
replies
2.0k
views
What Does Windown Size Exact Mean When Trimming
trimming
updated 8.7 years ago by 101k • written 8.7 years ago by ▴ 310
2
votes
4
replies
3.4k
views
About Mouse Reference Genome
reference
updated 8.7 years ago by 5.8k • written 8.7 years ago by ▴ 310
6
votes
9
replies
6.8k
views
Questions About Pair-End Reads Which Are Not Match For Bwa
bwa
updated 8.7 years ago by 3.2k • written 8.7 years ago by ▴ 310
11
votes
5
replies
24k
views
Mm9 Vs Mm10, Which One Is Better For Mouse Reference
reference
updated 8.7 years ago by 5.2k • written 8.7 years ago by ▴ 310
9
votes
8
replies
5.4k
views
About The Priority Of Trimming
trimming
updated 8.7 years ago by 101k • written 8.7 years ago by ▴ 310
0
votes
4
replies
1.7k
views
What Should I Do With This K Mer Content Result As Followings? Should I Give Up Using It?
8.7 years ago by Tonyzeng ▴ 310
2
votes
1
reply
4.5k
views
Cutadapt
updated 8.7 years ago by 101k • written 8.7 years ago by ▴ 310
1
vote
8
replies
8.5k
views
Bwa Alignment Failed
bwa
updated 8.7 years ago by 12k • written 8.7 years ago by ▴ 310
5
votes
4
replies
6.5k
views
Bwa Installation Failed After "Make" Command In Linux
bwa
updated 8.7 years ago by 93k • written 8.7 years ago by ▴ 310
2
votes
2
replies
1.9k
views
Does Bwa Require Pair-End Reads With The Same Length?
mapping
updated 8.7 years ago by 93k • written 8.7 years ago by ▴ 310
2
votes
6
replies
3.0k
views
How To Delete The All Fastq Reads Which Includes A Potential 50Bp Illumina Single End Pcr Primer 1
trimming
updated 8.7 years ago by 4.7k • written 8.7 years ago by ▴ 310
0
votes
4
replies
3.3k
views
Fastq File Split Using Corresponding Id Identifier In Tag File, Not Barcode Sequence
fastq split tool script
updated 8.7 years ago by 4.0k • written 8.7 years ago by ▴ 310
44 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6