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Showing :
questions
0
votes
1
reply
2.5k
views
Anyone Has Used Snp & Variation Suite Of Golden Helix?
snp
filtering
updated 3.1 years ago by
Ram
43k • written 10.5 years ago by
Tonyzeng
▴ 310
4
votes
6
replies
5.6k
views
Error When Convert Mouse Snp137.Txt To .Vcf Format
dbsnp
gatk
mouse
variant
vcf
updated 9 months ago by
Ram
43k • written 10.5 years ago by
Tonyzeng
▴ 310
2
votes
2
replies
4.3k
views
A Question About Pair-End Reads Alignment
alignment
updated 8.7 years ago by
Biostar
20 • written 10.7 years ago by
Tonyzeng
▴ 310
16
votes
18
replies
21k
views
Vcf Sort According To Order Of The Reference File
gatk
updated 8.9 years ago by
Biostar
20 • written 10.5 years ago by
Tonyzeng
▴ 310
5
votes
1
reply
4.5k
views
Overrepresented Sequences Question
qc
updated 9.4 years ago by
Biostar
20 • written 10.7 years ago by
Tonyzeng
▴ 310
4
votes
7
replies
7.4k
views
How To Adjust The Chromosome Contigs Order
gatk
reference
dbsnp
chromosome
updated 3.1 years ago by
Pierre Lindenbaum
161k • written 10.5 years ago by
Tonyzeng
▴ 310
4
votes
1
reply
4.2k
views
Selecting Heterozygote Calls Using Selectvariants
gatk
updated 3.1 years ago by
Ram
43k • written 10.4 years ago by
Tonyzeng
▴ 310
3
votes
6
replies
2.4k
views
Does Alignment Require All The Reads With The Same Length?
alignment
updated 9.7 years ago by
Biostar
20 • written 10.7 years ago by
Tonyzeng
▴ 310
0
votes
2
replies
2.2k
views
The Tools For Reducing Variants
filtering
vcf
updated 9.8 years ago by
Biostar
20 • written 10.4 years ago by
Tonyzeng
▴ 310
3
votes
5
replies
5.7k
views
Questions About Annotation Of Mouse Exome Variants Data By Annovar
mouse
annovar
exome-sequencing
updated 10.4 years ago by
Charles Warden
8.2k • written 10.5 years ago by
Tonyzeng
▴ 310
2
votes
1
reply
3.8k
views
Information Has Missed And Messed After Converting Annotated Whole-Genome Data Into Txt File
annotation
conversion
ngs
annovar
updated 10.4 years ago by
Alex Paciorkowski
3.5k • written 10.4 years ago by
Tonyzeng
▴ 310
2
votes
2
replies
4.4k
views
Variant Quality Score Recalibration (Vqsr) For Non-Human Genomes
gatk
10.4 years ago by
Tonyzeng
▴ 310
2
votes
2
replies
3.9k
views
Selectvariants And Annotation Of Variants With Vcf Format
gatk
annotation
updated 10.4 years ago by
Sean Davis
26k • written 10.4 years ago by
Tonyzeng
▴ 310
1
vote
1
reply
1.9k
views
Is This An Error Of Ref Dbsnp?
dbsnp
error
variant
filtering
ngs
updated 10.5 years ago by
DG
7.3k • written 10.5 years ago by
Tonyzeng
▴ 310
1
vote
3
replies
2.6k
views
A Non-Human Variants Data Analysis Error By Using Variants_Reduction.Pl
annovar
10.5 years ago by
Tonyzeng
▴ 310
2
votes
3
replies
3.5k
views
Snp Calling Error By Gatk Unifiedgenotyper Program
snp
gatk
10.5 years ago by
Tonyzeng
▴ 310
0
votes
10
replies
5.5k
views
Reorder The Contig=<Id Of The Header Of Vcf File, How?
vcf
updated 10.5 years ago by
Chris Miller
22k • written 10.5 years ago by
Tonyzeng
▴ 310
3
votes
1
reply
3.3k
views
Is That Necessary To Remove The Chr M And Y Of Reference File And Bam File For The Downstream Work?
bam
vcf
reference
updated 10.5 years ago by
Ashutosh Pandey
12k • written 10.5 years ago by
Tonyzeng
▴ 310
15
votes
14
replies
14k
views
6 follow
A Quick Way To View Or Check The Order Of Chromosome In Bam File
bam
samtools
updated 10.5 years ago by
Pierre Lindenbaum
161k • written 10.5 years ago by
Tonyzeng
▴ 310
6
votes
9
replies
4.1k
views
Need Suggestions For The Sequencing Data Analysis From Mouse Community
dbsnp
reference
mouse
gatk
vcf
updated 10.5 years ago by
Neilfws
49k • written 10.5 years ago by
Tonyzeng
▴ 310
8
votes
5
replies
3.1k
views
Is Igv Software The Only Available Software To Open Bam File
bam
updated 10.5 years ago by
Bioch'Ti
★ 1.1k • written 10.5 years ago by
Tonyzeng
▴ 310
8
votes
5
replies
6.0k
views
Duplication Removing Using Filtering Xt:A:U, Samtools -Rmdup And Picard Markduplicates
samtools
picard
markduplicates
updated 10.5 years ago by
GouthamAtla
12k • written 10.6 years ago by
Tonyzeng
▴ 310
20
votes
15
replies
18k
views
Where To Download Mouse Mm10 Dbsnp Database With Vcf Format
vcf
updated 16 months ago by
Ram
43k • written 10.5 years ago by
Tonyzeng
▴ 310
0
votes
1
reply
2.7k
views
Mouse Dbsnp Database For Quality Score Recalibration From Gatk
dbsnp
gatk
mouse
10.5 years ago by
Tonyzeng
▴ 310
9
votes
9
replies
7.4k
views
9 follow
Reliable Tools To Filter Vcf Format Files
vcf
variant
updated 10 months ago by
Ram
43k • written 10.6 years ago by
Tonyzeng
▴ 310
2
votes
3
replies
6.1k
views
Picard Mark Duplicate Reads In Galaxy
picard
markduplicates
galaxy
updated 10.6 years ago by
boris
▴ 10 • written 10.6 years ago by
Tonyzeng
▴ 310
2
votes
4
replies
3.9k
views
Interval Format Variant Files Convertion Problems And Igv And Annotation Application
variant-calling
igv
format
updated 10.6 years ago by
Devon Ryan
104k • written 10.6 years ago by
Tonyzeng
▴ 310
0
votes
2
replies
4.6k
views
Is It Necessary To Remove Duplications After Bwa Alignment?
bwa
10.6 years ago by
Tonyzeng
▴ 310
2
votes
6
replies
4.3k
views
Bwa Alignment And Input Pair-End Format, Does Fastq Encoding Of The Input Matter?
bwa
alignment
format
updated 10.6 years ago by
Istvan Albert
100k • written 10.6 years ago by
Tonyzeng
▴ 310
1
vote
8
replies
20k
views
Bwa Index Output And Bwa Aln Problem
bwa
updated 10.6 years ago by
Ashutosh Pandey
12k • written 10.6 years ago by
Tonyzeng
▴ 310
1
vote
1
reply
2.8k
views
How To Know The Progress Of Program Running Like Bwa Index Or Aln?
bwa
updated 10.6 years ago by
Devon Ryan
104k • written 10.6 years ago by
Tonyzeng
▴ 310
1
vote
2
replies
2.6k
views
Snp Calling And Annotation
annotation
updated 10.6 years ago by
Jorge Amigo
14k • written 10.6 years ago by
Tonyzeng
▴ 310
1
vote
4
replies
2.4k
views
What Does Windown Size Exact Mean When Trimming
trimming
updated 10.6 years ago by
Devon Ryan
104k • written 10.6 years ago by
Tonyzeng
▴ 310
2
votes
4
replies
3.8k
views
About Mouse Reference Genome
reference
updated 10.6 years ago by
Ian
6.0k • written 10.6 years ago by
Tonyzeng
▴ 310
6
votes
9
replies
8.2k
views
Questions About Pair-End Reads Which Are Not Match For Bwa
bwa
updated 10.6 years ago by
Biomonika (Noolean)
3.2k • written 10.6 years ago by
Tonyzeng
▴ 310
11
votes
5
replies
27k
views
Mm9 Vs Mm10, Which One Is Better For Mouse Reference
reference
updated 10.6 years ago by
Ido Tamir
5.2k • written 10.6 years ago by
Tonyzeng
▴ 310
9
votes
8
replies
6.3k
views
About The Priority Of Trimming
trimming
updated 10.7 years ago by
Devon Ryan
104k • written 10.7 years ago by
Tonyzeng
▴ 310
0
votes
4
replies
2.1k
views
What Should I Do With This K Mer Content Result As Followings? Should I Give Up Using It?
10.7 years ago by
Tonyzeng
▴ 310
2
votes
1
reply
5.0k
views
Cutadapt
updated 10.7 years ago by
Devon Ryan
104k • written 10.7 years ago by
Tonyzeng
▴ 310
1
vote
8
replies
9.5k
views
Bwa Alignment Failed
bwa
updated 10.7 years ago by
swbarnes2
14k • written 10.7 years ago by
Tonyzeng
▴ 310
5
votes
4
replies
7.5k
views
Bwa Installation Failed After "Make" Command In Linux
bwa
updated 10.7 years ago by
Istvan Albert
100k • written 10.7 years ago by
Tonyzeng
▴ 310
2
votes
2
replies
2.2k
views
Does Bwa Require Pair-End Reads With The Same Length?
mapping
updated 10.7 years ago by
Istvan Albert
100k • written 10.7 years ago by
Tonyzeng
▴ 310
2
votes
6
replies
3.5k
views
How To Delete The All Fastq Reads Which Includes A Potential 50Bp Illumina Single End Pcr Primer 1
trimming
updated 10.7 years ago by
Mikael Huss
4.8k • written 10.7 years ago by
Tonyzeng
▴ 310
0
votes
4
replies
4.1k
views
Fastq File Split Using Corresponding Id Identifier In Tag File, Not Barcode Sequence
fastq
updated 10 months ago by
Ram
43k • written 10.7 years ago by
Tonyzeng
▴ 310
44 results • Page
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