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Comment: C: Extract bed regions from CRAM files
3.2 years ago by MAPK ★ 2.1k
3
votes
8
replies
2.4k
views
Extract bed regions from CRAM files
BAM CRAM
3.2 years ago by MAPK ★ 2.1k
0
votes
1
reply
938
views
SRA to paired fastq per read group
sra NGS
updated 3.2 years ago by 136k • written 3.2 years ago by ★ 2.1k
0
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0
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1.8k
views
Comment: C: How to create custom docker image to download bam files from SRA
3.2 years ago by MAPK ★ 2.1k
6
votes
4
replies
1.8k
views
How to create custom docker image to download bam files from SRA
docker
updated 4 months ago by ★ 1.1k • written 3.2 years ago by ★ 2.1k
0
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1
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3.2k
views
Comment: C: Plink --merge-list generating error
3.3 years ago by MAPK ★ 2.1k
3
votes
3
replies
3.2k
views
Plink --merge-list generating error
plink
updated 3.3 years ago by ★ 4.7k • written 3.3 years ago by ★ 2.1k
0
votes
3
replies
1.1k
views
How to calculate maf for a variant for case and control
MAF genetics variant
3.3 years ago by MAPK ★ 2.1k
0
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0
replies
1.1k
views
Comment: C: How to calculate maf for a variant for case and control
3.3 years ago by MAPK ★ 2.1k
0
votes
0
replies
989
views
Comment: C: Dealing with GATK illegal character
3.3 years ago by MAPK ★ 2.1k
2
votes
2
replies
989
views
Dealing with GATK illegal character
gatk
3.3 years ago by MAPK ★ 2.1k
4
votes
5
replies
1.1k
views
How to set sleep in GNU parallel in a esearch/efetch script
sra ncbi programming shell
updated 3.3 years ago by ★ 4.4k • written 3.3 years ago by ★ 2.1k
0
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1
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1.1k
views
Comment: C: How to set sleep in GNU parallel in a esearch/efetch script
3.3 years ago by MAPK ★ 2.1k
0
votes
2
replies
857
views
Understanding filters used in plink
plink
updated 3.3 years ago by 35k • written 3.3 years ago by ★ 2.1k
3
votes
10
replies
3.4k
views
8 follow
Phylogenetic analysis for large size fasta sequences
phylogenetics
updated 2.6 years ago by ▴ 40 • written 5.5 years ago by ★ 2.1k
2
votes
2
replies
1.5k
views
GATK version differences
GATK
3.4 years ago by MAPK ★ 2.1k
1
vote
1
reply
3.0k
views
Converting Variant ID to RsID in batch
SNP rsID
3.4 years ago by MAPK ★ 2.1k
3
votes
1
reply
1.2k
views
VEP output and protein change
VEP VCF
updated 3.4 years ago by 41k • written 3.4 years ago by ★ 2.1k
2
votes
1
reply
1.1k
views
How to combining VEP and VCF in one file
vcf vep
updated 3.4 years ago by 158k • written 3.4 years ago by ★ 2.1k
2
votes
3
replies
840
views
Intersect exome region from whole genome gvcf
gatk GenomicsDBImport
3.4 years ago by MAPK ★ 2.1k
0
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1
reply
840
views
Comment: C: Intersect exome region from whole genome gvcf
3.4 years ago by MAPK ★ 2.1k
0
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0
replies
3.3k
views
Comment: C: GATK GenomicsDBImport intervals
3.4 years ago by MAPK ★ 2.1k
1
vote
2
replies
3.3k
views
GATK GenomicsDBImport intervals
GATK gvcf
3.4 years ago by MAPK ★ 2.1k
0
votes
0
replies
405
views
Mismatch table from pariwise sequence alignment
alignment
3.6 years ago by MAPK ★ 2.1k
9
votes
3
replies
1.0k
views
How to cite datasets downloaded from Ensembl?
Citation Ensembl
updated 3.7 years ago by ▴ 330 • written 3.7 years ago by ★ 2.1k
0
votes
2
replies
1.1k
views
Cross assembly of metagenomics
RNA-Seq
updated 3.7 years ago by ▴ 330 • written 4.8 years ago by ★ 2.1k
4
votes
6
replies
6.5k
views
How to extract chrX, chrY and chrM from a vcf file?
VCF
updated 3.7 years ago by ▴ 10 • written 7.2 years ago by ★ 2.1k
0
votes
0
replies
998
views
Comment: C: GFF file for soybean RNAseq analysis
3.8 years ago by MAPK ★ 2.1k
2
votes
2
replies
998
views
GFF file for soybean RNAseq analysis
RNA-Seq
updated 3.8 years ago by ★ 3.8k • written 3.8 years ago by ★ 2.1k
8
votes
9
replies
8.8k
views
Translate Dna To Protein Using Transeq
dna
updated 3.9 years ago by 20 • written 9.6 years ago by ★ 2.1k
0
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0
replies
1.9k
views
Comment: C: Why is it important to control ethnicity when studying rare variants?
updated 3.9 years ago by 41k • written 7.8 years ago by ★ 2.1k
1
vote
0
replies
11k
views
Answer: A: how to get the genotypes from vcf file.
updated 3.9 years ago by 41k • written 7.8 years ago by ★ 2.1k
0
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1
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1.9k
views
Comment: C: Why is it important to control ethnicity when studying rare variants?
updated 3.9 years ago by 41k • written 7.8 years ago by ★ 2.1k
0
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1
reply
2.0k
views
Comment: C: How to find the variant type, location and effects (synonymous/nonsynonymous)
updated 3.9 years ago by 41k • written 7.8 years ago by ★ 2.1k
4
votes
3
replies
979
views
How to decide on a reasonable title for a bioinformatics talk
interview career
updated 8 months ago by 41k • written 3.9 years ago by ★ 2.1k
0
votes
0
replies
979
views
Comment: C: How to decide on a reasonable title for a bioinformatics talk
3.9 years ago by MAPK ★ 2.1k
0
votes
0
replies
5.3k
views
Comment: C: IBD vs IBS
updated 3.9 years ago by 41k • written 7.8 years ago by ★ 2.1k
0
votes
1
reply
2.4k
views
Comment: C: Statistical analysis to compare three different variables
updated 3.9 years ago by 41k • written 7.9 years ago by ★ 2.1k
1
vote
1
reply
2.2k
views
Comment: C: What could be the reason for having mutations in too many cancer samples?
updated 3.9 years ago by 41k • written 7.9 years ago by ★ 2.1k
0
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2
replies
2.2k
views
Comment: C: What could be the reason for having mutations in too many cancer samples?
updated 3.9 years ago by 41k • written 7.9 years ago by ★ 2.1k
0
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1
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2.2k
views
Comment: C: What could be the reason for having mutations in too many cancer samples?
updated 3.9 years ago by 41k • written 7.9 years ago by ★ 2.1k
0
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1
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13k
views
Comment: C: What is GFF3 and how to extract genomic sequences from it?
updated 3.9 years ago by 41k • written 9.6 years ago by ★ 2.1k
0
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0
replies
13k
views
Comment: C: What is GFF3 and how to extract genomic sequences from it?
updated 3.9 years ago by 41k • written 9.6 years ago by ★ 2.1k
0
votes
1
reply
41k
views
Comment: C: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
updated 3.9 years ago by 41k • written 7.8 years ago by ★ 2.1k
0
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0
replies
5.7k
views
Comment: C: Mastervar - Complete Genomics Data Format To Vcf
updated 4.0 years ago by 41k • written 7.9 years ago by ★ 2.1k
0
votes
0
replies
9.9k
views
Comment: C: What are the terms for reference allele and alternate alleles in cancer?
updated 4.0 years ago by 41k • written 8.0 years ago by ★ 2.1k
1
vote
0
replies
3.5k
views
Comment: C: How Many Cells Will Be Involved In One Dna Or Rna Sequencing?
updated 4.0 years ago by 41k • written 8.0 years ago by ★ 2.1k
0
votes
0
replies
3.9k
views
Comment: C: Get multiple snps coverage (allelic depth) from bam files
updated 4.0 years ago by 41k • written 8.0 years ago by ★ 2.1k
0
votes
1
reply
3.9k
views
Comment: C: Get multiple snps coverage (allelic depth) from bam files
updated 4.0 years ago by 41k • written 8.0 years ago by ★ 2.1k
0
votes
1
reply
3.2k
views
Comment: C: IBD calculation with Plink
4.0 years ago by MAPK ★ 2.1k
560 results • Page 2 of 12
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