Limit : all time
all time today this week this month this year
121,961 results • Page 189 of 2440
Sort: Rank
Rank Views Votes Replies
1
vote
1
reply
771
views
Tool: Coremine Medical Introduction - connect - discover - share | explore and visualize associations
drug-target drug gene
updated 23 months ago by 45k • written 23 months ago by ▴ 20
0
votes
3
replies
1.1k
views
Reproducible seurat clustering
seurat clustering single-cell
updated 23 months ago by 45k • written 23 months ago by ▴ 120
1
vote
3
replies
1.5k
views
Failed to download IlluminaHumanMethylationEPICv2anno.20a1.hg38
EPIC
23 months ago by christine.a.pedersen ▴ 20
0
votes
2
replies
786
views
Is it valuable to identify hubgenes of miRNAs target genes
hub-genes miRNA
23 months ago by Ant ▴ 50
1
vote
1
reply
1.2k
views
VG autoindex with pangenome constructed using minigraph-cactus
vg
23 months ago by Marion • 0
0
votes
0
replies
699
views
Forum: How to learn bioinformatics online?
self-education education learning
updated 23 months ago by 45k • written 23 months ago by • 0
4
votes
4
replies
1.8k
views
Best way to use k-mers as a predictor in my neural network
convolutional-neural-network kmer
updated 23 months ago by 20k • written 23 months ago by ▴ 30
3
votes
14
replies
2.7k
views
How to extract specific region from multiple bam files and merge the outputs into single bam?
bam rna-seq
updated 23 months ago by 154k • written 23 months ago by ▴ 810
7
votes
13
replies
2.5k
views
deal with PCA and my samples
PCA DEG meta-analysis
23 months ago by ali • 0
0
votes
1
reply
829
views
Testing the interaction term in single-cell RNAseq DEG analysis
DEG scRNAseq Seurat
updated 23 months ago by 89k • written 23 months ago by ▴ 40
1
vote
2
replies
912
views
Normalization on top of TMM scaled data
RNA-Seq edgeR Normalization
23 months ago by weixiaokuan ▴ 140
0
votes
5
replies
1.5k
views
R Kegg Need help ASAP
KEGG RStudio
updated 23 months ago by 45k • written 23 months ago by • 0
16
votes
9
replies
23k
views
8 follow
How to count fasta sequences efficiently using (or not ) biopython
biopython python fasta
updated 23 months ago by ★ 1.7k • written 7.7 years ago by ▴ 110
0
votes
3
replies
1.9k
views
Building customized database using HHblits
HMMER HHblits Homology HHsuite Protein
updated 23 months ago by ★ 30k • written 23 months ago by ▴ 160
0
votes
0
replies
560
views
Tool: massSight: A tool to combine LC-MS datasets
qc metabolomics omics R lc-ms
23 months ago by Chiraag • 0
0
votes
0
replies
585
views
scFEA package in R -Create STOICHIOMETRY_MATRIX
R RNA-seq scFEA transcriptomics
23 months ago by PBC ▴ 10
2
votes
2
replies
1.0k
views
RAST annotation of RNA-seq transcriptome results in some genes appearing more than once
R RNA-seq
updated 23 months ago by ★ 2.9k • written 23 months ago by ▴ 70
3
votes
6
replies
2.9k
views
Help with genome comparison between two strains.
genome-wide-comparison
updated 23 months ago by ★ 2.9k • written 23 months ago by ▴ 10
2
votes
6
replies
1.5k
views
batch correction in DESeq2
DESeq2
updated 23 months ago by 45k • written 23 months ago by ▴ 20
0
votes
0
replies
614
views
Issues with FilterRNAMutationsNoPoN in RNA-Mutect Workflow for Tumour Mutational Burden Estimation
Funcotator Mutect2 TMB RNA-MUTECT-WMN RNA-Mutect
updated 23 months ago by 45k • written 23 months ago by • 0
0
votes
1
reply
617
views
Best automatic cell annotation tool for mouse immune single cell data?
scRNA-seq Mouse
updated 23 months ago by 45k • written 23 months ago by ▴ 50
1
vote
5
replies
1.5k
views
How to give the defined p value in MACS2 command line (peak calling)
value P
updated 23 months ago by 89k • written 23 months ago by • 0
3
votes
9
replies
4.4k
views
Nextflow - Wait for process ending to call the next one without output
nextflow
updated 23 months ago by ▴ 10 • written 2.2 years ago by ▴ 50
1
vote
4
replies
1.1k
views
Matching protein IDs starting with WP_ to protein IDs starting with YP_
ID protein refseq
23 months ago by bio_student • 0
2
votes
6
replies
1.3k
views
Ensembl's POST "vep/:species/region": multiple alternate alleles for a single variant in R
R Ensembl POST VEP
updated 23 months ago by 45k • written 23 months ago by • 0
3
votes
12
replies
10k
views
6 follow
samtools sort- no output file generated
samtools
updated 23 months ago by • 0 • written 8.5 years ago by ▴ 180
0
votes
0
replies
512
views
"IndexError: list index out of range" error while running BETA (Cistrome)
BETA
23 months ago by Chanderkant Chaudhary • 0
2
votes
1
reply
677
views
mRNA production relation to gene length in RNASeq
rna-seq
updated 23 months ago by 89k • written 23 months ago by • 0
0
votes
1
reply
976
views
Unable to Generate Motif class for zebrafish scATAC data using Signac package.
scRNA scATAC Seq Annotation
updated 23 months ago by 45k • written 23 months ago by • 0
0
votes
0
replies
5.8k
views
Job: Ph.D. in Comparative Biology Program and Graduate Ph.D. Fellowships Program at the American Museum of Natural History's Richard Gilder Graduate Schoo…
Fellowships Ph.D. Graduate
23 months ago by Info-rggs ▴ 20
1
vote
6
replies
3.0k
views
Problems when running mmseqs
mmseqs
updated 23 months ago by 45k • written 23 months ago by • 0
0
votes
2
replies
990
views
remove low coverage mpileup file
mpileup coverage pool-seq
23 months ago by mk-dna • 0
0
votes
0
replies
762
views
News: Spatial Omics and Multiplexed Image Analysis course
Spatial-Omics Multiplexed-Image-Analysis
updated 23 months ago by 45k • written 23 months ago by ★ 2.6k
1
vote
6
replies
1.8k
views
A question about genotyping rate
genotyping snps harmonizer array
23 months ago by abedkurdi10 ▴ 190
0
votes
1
reply
1.0k
views
flowCore biexponential transformation
flowcell flowcore cytometry
updated 23 months ago by ★ 1.9k • written 23 months ago by ▴ 70
0
votes
2
replies
1.0k
views
Normalized data values very different from unnormalized counts in Seurat
scRNA Single-cell Seurat
23 months ago by AHerik ▴ 40
0
votes
0
replies
1.6k
views
Help with cellchat error
cellchat
updated 23 months ago by 45k • written 23 months ago by ▴ 360
3
votes
6
replies
2.0k
views
Annotating genome based on Sequence
genome annotation
updated 23 months ago by 4.7k • written 23 months ago by ▴ 30
0
votes
0
replies
661
views
How to generate .map and .ped files (plink format for further analysis) from callcode files (APT) ? or else?
APT PLINK PED MAP
23 months ago by tvibhaps ▴ 10
0
votes
2
replies
965
views
Genome Assembly no matches
In-Silico UCSC PCR
updated 23 months ago by ★ 1.8k • written 23 months ago by • 0
0
votes
3
replies
991
views
Doheatmap in seurat
seurat Heatmaps
updated 23 months ago by 45k • written 23 months ago by ▴ 10
0
votes
2
replies
905
views
Removing all genome annotations from a list of sequences in Geneious
Geneious
23 months ago by cedric.blais ▴ 20
0
votes
0
replies
567
views
News: Virtual de novo RNA-seq (transcriptomics) Workshop: November 13-16, 2023
workshop RNA-seq transcriptomics
updated 23 months ago by 45k • written 23 months ago by ▴ 10
4
votes
3
replies
1.1k
views
Parsing columns with awk
awk
updated 23 months ago by 45k • written 23 months ago by ▴ 350
9
votes
5
replies
3.0k
views
How to convert hard-masked genome to soft-masked?
repeatmasking repeats
updated 23 months ago by ▴ 140 • written 2.6 years ago by • 0
2
votes
0
replies
1.0k
views
Herald: The Biostar Herald for Monday, October 30, 2023
herald
23 months ago by Biostar 3.6k
5
votes
10
replies
2.1k
views
Different number of reads when converting data from FASTQ to BAM and CRAM to FASTQ
picard
23 months ago by ManuelDB ▴ 110
0
votes
0
replies
431
views
Transcriptome de novo from different library types
rna-seq de-novo-transcriptome deg
updated 23 months ago by 45k • written 23 months ago by • 0
1
vote
6
replies
1.2k
views
Enrichment analysis in the plant proteins
gene-ontology
updated 23 months ago by 45k • written 23 months ago by • 0
0
votes
0
replies
619
views
Filtering vcf by strand bias / annotating strand bias on
Vcf
updated 23 months ago by 45k • written 23 months ago by ▴ 250
121,961 results • Page 189 of 2440
Recent Votes
A: Which is the proper RNA-seq count table transformation to perform hierarchial cl
Answer: Differences between published differential gene expression results and own analy
Answer: If TPM is not comparable across cohorts, can it be used as the input for ML mode
Answer: If TPM is not comparable across cohorts, can it be used as the input for ML mode
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
sra-explorer : find SRA and FastQ download URLs in a couple of clicks
Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
Recent Locations • All
United States, 13 minutes ago
Australia, 33 minutes ago
UCLA, 33 minutes ago
United States, 44 minutes ago
United States, 1 hour ago
United States, 1 hour ago
United States, 1 hour ago
Recent Awards • All
Popular Question to sacha ★ 2.5k
Popular Question to Ann ▴ 40
Scholar to anovak ▴ 180
Popular Question to iamsmor • 0
Popular Question to cmdcolin ★ 4.3k
Popular Question to yura.grabovska ▴ 830
Popular Question to Ashwin ▴ 70
Recent Replies
Comment: Errors with RSEM/bowtie2 by GenoMax 154k
That is good confirmation. Bacl to the error message. > I don't know how to fix this, given that I already did the trimming steps. DId yo…
Comment: Differences between published differential gene expression results and own analy by dsull ★ 7.7k
Honestly, those things shouldn't result in a considerable discrepancy. The largest difference will come from the post-processing & analysi…
Answer: Differences between published differential gene expression results and own analy by Ales ▴ 50
I second the comment about comparing the top 100 genes - if you see vastly different results, I would lean closer to examining protocols th…
Answer: Help interpreting BLASTn results and phylogenetic tree for genetics practical by Mensur Dlakic ★ 30k
I think what you are asking involves too much work for anyone to explain it in granular detail. But who knows, maybe there is a good soul o…
Answer: Differences between published differential gene expression results and own analy by yura.grabovska ▴ 830
When you say vastly different, what do you mean exactly? Does your top 100 up/down not match theirs at all?
Comment: Functional prediction for proteins of bacteria. by colindaven 8.0k
Have a look at tools like SnpEff or Ensembl VEP. Perhaps your bacterial sp is included.
Comment: Errors with RSEM/bowtie2 by Olivia • 0
Yes, I already made the transcriptome with these tools, and the CD-HIT-EST fasta file is the transcript file that I am using for RSEM. Then…
Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks by Guilherme • 0
Oh, ok. It seems like NCBI stores the files in SRA format (thus needing conversion and database lookups by sra toolkit tools) and EBI store…
Comment: help with modkit on nanopore sequencing data. by andres.firrincieli 3.9k
On the DMR tutorial page, they retrieve Human CpG Islands from the UCSC Table Browser. You can do the same thing for Mouse CpG Islands. Hav…
Comment: After doublet detection in 10x scRNA-Seq data, there is still evidence of double by yura.grabovska ▴ 830
Yes but the problem is that biological knowledge is never fully encompasing. While I can say that a cell expressing CD45 alongside astrocyt…
Comment: DNA copy number blacklist for excluding common unreliable regions by yura.grabovska ▴ 830
Human genome, ideally hg38
Comment: Is Newbler still available for download by anweshaash • 0
Hello, I am wondering if you got access to the software or not. I am looking to use Newbler for my research and I contacted Roche too but t…
Comment: Errors with RSEM/bowtie2 by GenoMax 154k
> I have previously run Trinity with the Trimmomatic step as well as CD-HIT-EST. I assume you did the above to generate the transcriptome,…
Answer: With 10x Visum HD : How to map the barcode id to the barcode sequence ? by sacha ★ 2.5k
Got it https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-inclusion-list-formerly-barcode-whitelist
Comment: limmaFit error when comparing TCGA RNA-Seq data by vernonlim98 • 0
Thanks for the advice. Am still new to RNA seq and R programming in general, and will just do the analysis by myself.
Traffic: 2991 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6