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121,961 results • Page
190 of 2440
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0
votes
3
replies
1.1k
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vg call problem request
DEL
accuracy
INS
call
vg
updated 23 months ago by
dthorbur
★ 3.1k • written 23 months ago by
20110700081
• 0
7
votes
7
replies
1.7k
views
cox1 genes Mosquitoes
python
metagenomics
23 months ago by
doppelganger1030
• 0
1
vote
2
replies
960
views
Obtaining count matrices from .h5mu files
scRNA-seq
CITE-seq
23 months ago by
dglad
• 0
0
votes
0
replies
637
views
r8s error in cross-validation step
r8s
divergence
rate
time
evolutionary
phylogenetics
23 months ago by
Simone
▴ 10
3
votes
6
replies
1.5k
views
FASTA File Concatenation
bash
FASTA
updated 23 months ago by
Ram
45k • written 23 months ago by
Yarabi
• 0
0
votes
0
replies
515
views
Do different microarray chips yield different accuracy of polygenic scores?
microarray
genome
SNP
polygenic-risk-score
updated 23 months ago by
Ram
45k • written 23 months ago by
a5864557
▴ 10
0
votes
1
reply
1.1k
views
Hey guys, I'm having a prob when using GATK4 BQSR . This dbsnp vcf file has chromosomes notated as 1,2 .... but my reference contiges are chr1.chr2…
GATK4
BQSR
updated 23 months ago by
Pierre Lindenbaum
166k • written 23 months ago by
ANImaL
• 0
0
votes
4
replies
1.1k
views
Low coverage, deletion and startloss? What do we see here?
deletion
igv
low-coverage
updated 23 months ago by
Ram
45k • written 23 months ago by
Daniel
• 0
0
votes
4
replies
1.6k
views
Error when trying to create a heatmap with DESeq2
R
heatmaps
RNA-seq
DESeq2
updated 23 months ago by
Ram
45k • written 23 months ago by
langziv
▴ 70
0
votes
0
replies
652
views
Harmony with PHATE
Phate
Single-cell
Harmony
Seurat
updated 23 months ago by
Ram
45k • written 23 months ago by
Tolga
▴ 30
1
vote
0
replies
832
views
News:
course - Comparative Genomics
Comparative-Genomics
updated 23 months ago by
Ram
45k • written 23 months ago by
Physalia-courses
★ 2.6k
1
vote
2
replies
1.1k
views
Cross validate RNA-seq and ATAC-seq
DAR
cross-validation
DEG
ATAC-seq
RNA-seq
updated 23 months ago by
ATpoint
89k • written 23 months ago by
Wang Cong
▴ 20
2
votes
3
replies
1.1k
views
How to make bam from start pos of read 1 and end pos of read 2 from paired end bam files
BAM
updated 23 months ago by
cmdcolin
★ 4.3k • written 23 months ago by
genomics_student
• 0
2
votes
2
replies
1.0k
views
Ensembl transcript IDs
Ensembl
transcript
IDs
written 23 months ago by
arsala521
▴ 60
5
votes
4
replies
2.2k
views
Integration Seurat different healthy samples (fresh vs frozen)
Integration
Seurat
23 months ago by
Tolga
▴ 30
2
votes
2
replies
1.1k
views
Designing Bioinformatic Pipeline to work on the Single cell RNA sequencing data analysis
sequencing
23 months ago by
Yasemin
• 0
2
votes
2
replies
1.2k
views
Downstream analysis during sc-ATAC seq
sc-ATAC-seq
Seurat
R
matrix
feature-barcode
23 months ago by
applepie
▴ 10
4
votes
2
replies
1.0k
views
Does anyone know which tool can I use to generate the chart in the picture?
chart
genome
atac-seq
updated 23 months ago by
BenAawf
▴ 10 • written 23 months ago by
Paulo
• 0
5
votes
4
replies
1.4k
views
Calculating height prediction from PGS
polygenic-score
updated 20 months ago by
Sam
★ 4.8k • written 23 months ago by
fitwae
• 0
1
vote
1
reply
798
views
Getting differentially expressed transcripts among primates from RNA-seq data
differential-gene-expression
RNA-seq-data-analysis
updated 23 months ago by
dthorbur
★ 3.1k • written 23 months ago by
arsala521
▴ 60
1
vote
4
replies
1.2k
views
Indexing pubmed articles by data available?
search
data
pubmed
query
23 months ago by
LauferVA
4.8k
1
vote
0
replies
963
views
Tutorial:
How to convert raw counts to TPM for TCGA data and make a heatmap across cancer types
RNAseq
heatmap
rstats
TCGA
23 months ago by
Ming Tommy Tang
★ 4.7k
5
votes
7
replies
2.5k
views
Paired-end RNA seq (NextSeq2000): 1-3% if R2 reads are only contain G bases
RNA-seq
23 months ago by
Jurgen
• 0
4
votes
7
replies
3.8k
views
6 follow
Insillico dual restriction enzyme reference genome digestion.
ddradseq
insillico
updated 23 months ago by
tshtatland
▴ 190 • written 9.2 years ago by
William
★ 5.4k
6
votes
5
replies
3.1k
views
Forum:
Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
23 months ago by
tshtatland
▴ 190
0
votes
0
replies
598
views
Tool:
Coremine Medical used in study to discover differentially expressed genes in multiple sclerosis
drugs
drug-targets
genes
23 months ago by
Coremine Medical
▴ 20
6
votes
8
replies
2.2k
views
N50 value of bacterial assembly is not half of total assembly size
bacterial
asssembly
spades
23 months ago by
analyst
▴ 70
4
votes
3
replies
1.1k
views
Trinity Insilico Normalization
Trinity
updated 23 months ago by
Ram
45k • written 23 months ago by
san96
▴ 190
2
votes
5
replies
2.3k
views
Doheatmap in seurat
seurat
doheatmap
updated 23 months ago by
Ram
45k • written 23 months ago by
odi
▴ 10
2
votes
2
replies
877
views
Analysis and results microarray data for research
microarray
updated 23 months ago by
GenoMax
154k • written 23 months ago by
Bruno
• 0
0
votes
0
replies
1.4k
views
Downloading data from BVBRC
bv-brc
bacterial-genomics
patric
updated 23 months ago by
Dany
• 0 • written 3.0 years ago by
raghuramdr
• 0
0
votes
2
replies
1.1k
views
R packages for DNA methylation as mediator analysis
statistics
R
EPIgenetics
array
EPIC
23 months ago by
Bioinfonext
▴ 480
0
votes
0
replies
615
views
MACS2 CallPeak Producing Empty Files When Specifying Genome size
macs2
ChIP-Seq
peak-calling
updated 18 months ago by
Ram
45k • written 23 months ago by
Marcos
• 0
1
vote
1
reply
1.1k
views
How to download taxonomy/lineage/taxonid information for JGI genome organism codes? (e.g., MycoCosm and PhycoCosm)
jgi
genomics
phycocosm
mycocosm
taxonomy
23 months ago by
O.rka
▴ 750
0
votes
1
reply
592
views
Account for know genetic variance in transgenic animal models during RNA-seq analysis
animal-model
RNA-seq
updated 23 months ago by
LChart
5.1k • written 23 months ago by
max.fischer03
• 0
3
votes
1
reply
696
views
How to retrieve the number of reads mapped for each chromosome in the BAM file of methylation data
bam
methylation
mapped
read
updated 23 months ago by
GenoMax
154k • written 23 months ago by
sata72
• 0
0
votes
0
replies
1.1k
views
Job:
Assistant Professor of Plant Systems Biology (Iowa State University)
Faculty
Assistant-Professor
updated 23 months ago by
Ram
45k • written 23 months ago by
arnstrm
★ 1.9k
0
votes
0
replies
768
views
News:
Online course Python Machine Learning in Biology, November 16, 2023
machine-learning
python
course
updated 23 months ago by
Ram
45k • written 23 months ago by
Sole
• 0
0
votes
1
reply
728
views
BrdU analysis of yeast replication
replication
yeast
sequencing
BrdU
updated 23 months ago by
Trivas
★ 1.9k • written 23 months ago by
quililk
• 0
2
votes
4
replies
2.7k
views
How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a specific way
R
FeaturePlot
Umap
Seurat
updated 23 months ago by
LauferVA
4.8k • written 23 months ago by
camillab.
▴ 160
1
vote
0
replies
577
views
Genomics and ML
genomics
ML
course
updated 23 months ago by
Ram
45k • written 23 months ago by
aj123
▴ 130
4
votes
2
replies
863
views
Tool for structural variation detection of plant WGS data
Plants
Structural-variation
WGS
23 months ago by
analyst
▴ 70
2
votes
4
replies
1.5k
views
Base modification detection for direct RNA sequencing Nanopore
nanopore
23 months ago by
henry-keen
▴ 50
2
votes
6
replies
1.6k
views
Bowtie2/Fastq-dump problem
bowtie2
fastq-dump
updated 23 months ago by
Ram
45k • written 23 months ago by
rafailadam46
• 0
122
votes
44
replies
15k
views
24 follow
News:
Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta
biostars
updated 23 months ago by
Ram
45k • written 12.9 years ago by
Istvan Albert
103k
5
votes
5
replies
3.5k
views
Tools for reference-guided de novo assembly of bacterial genome
reference-guided
genome
assembly
spades
Bacterial
23 months ago by
analyst
▴ 70
3
votes
4
replies
1.4k
views
Exception in thread "main" java.lang.RuntimeException: Sequence and quality length don't match
Trimmomatic
23 months ago by
san96
▴ 190
4
votes
4
replies
2.3k
views
GSVA Analysis
RNA-seq
GSVA
GSEA
updated 23 months ago by
rpolicastro
13k • written 23 months ago by
Ranjini
▴ 10
0
votes
0
replies
808
views
Humann3 (slowly) creating many bowtie2 index files in the temp dir
Humann3
Bowtie2
Metaphlan
Bowti2
Index
23 months ago by
emi-smiley
▴ 10
0
votes
0
replies
515
views
How to find OS duration, status information of patients in GSE1159 or GSE6891 (Microarray data analysis)
Microarray
23 months ago by
sf.jeong510
▴ 10
121,961 results • Page
190 of 2440
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Answer: If TPM is not comparable across cohorts, can it be used as the input for ML mode
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sra-explorer : find SRA and FastQ download URLs in a couple of clicks
Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
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Comment: ESTIMATE (Estimation of STromal and Immune cells in MAlignant Tumor tissues usin
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write.table(df1, "df1.txt", sep = "\t", row.names = T, col.names = T, quote = FALSE)
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154k
That is good confirmation. Bacl to the error message. > I don't know how to fix this, given that I already did the trimming steps. DId yo…
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★ 7.7k
Honestly, those things shouldn't result in a considerable discrepancy. The largest difference will come from the post-processing & analysi…
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I second the comment about comparing the top 100 genes - if you see vastly different results, I would lean closer to examining protocols th…
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When you say vastly different, what do you mean exactly? Does your top 100 up/down not match theirs at all?
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8.0k
Have a look at tools like SnpEff or Ensembl VEP. Perhaps your bacterial sp is included.
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Yes, I already made the transcriptome with these tools, and the CD-HIT-EST fasta file is the transcript file that I am using for RSEM. Then…
Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
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Guilherme
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Oh, ok. It seems like NCBI stores the files in SRA format (thus needing conversion and database lookups by sra toolkit tools) and EBI store…
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Human genome, ideally hg38
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Hello, I am wondering if you got access to the software or not. I am looking to use Newbler for my research and I contacted Roche too but t…
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Got it https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-inclusion-list-formerly-barcode-whitelist
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