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121,885 results • Page 19 of 2438
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6
votes
3
replies
647
views
Tool: RNAseq Power Calculator
calculator Replicates RNAseq Statistics Power
written 4 months ago by ▴ 70
1
vote
3
replies
694
views
Association (Protein interaction) in Intact database results what can really mean?
protein-protein-interaction database protein proteins Intact
updated 4 months ago by ★ 30k • written 4 months ago by • 0
3
votes
4
replies
828
views
About FastP Tool
Raw Quality_control Preprocessing alignment reads
4 months ago by AIMAR ▴ 70
3
votes
9
replies
1.3k
views
Transcript identification and quantification
splitseq transcript scRNA
4 months ago by anton.avramov • 0
0
votes
1
reply
527
views
Treatment of nanoparticles after buying before the experiment
fermentation treatment Nanoparticles dark
updated 4 months ago by 89k • written 4 months ago by • 0
2
votes
1
reply
546
views
Tool: Accessible color palettes for charts and dataviz
dataviz
updated 4 months ago by 6.5k • written 4 months ago by ▴ 20
3
votes
4
replies
1.1k
views
Warning in bcftools when subsetting a VCF by variant ID
bcftools VCF Beagle5.5
updated 4 months ago by 166k • written 4 months ago by • 0
1
vote
2
replies
603
views
Lucidea Array Spotter - Question about machinery
sequencing Microarray
updated 4 months ago by 153k • written 4 months ago by • 0
1
vote
5
replies
1.1k
views
Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
slingshot PCA Seurat scater single-cell
updated 3 months ago by 6.5k • written 4 months ago by ▴ 250
0
votes
6
replies
891
views
How can I find KO IDs for ORF sequences in a large FASTA file?
KEGG ORF
updated 3 months ago by ★ 30k • written 4 months ago by • 0
0
votes
0
replies
447
views
Single MAG Recruitment to multiple metaT Samples
metagenomics rna-seq transcriptomics
4 months ago by zjhennin • 0
0
votes
1
reply
1.2k
views
Normalization - Tissue specificity analysis
gtex
updated 4 months ago by • 0 • written 4.4 years ago by ▴ 110
2
votes
4
replies
3.3k
views
Transcript Specific Expression Data
rna-seq
updated 4 months ago by • 0 • written 12.9 years ago by ▴ 30
9
votes
6
replies
8.5k
views
6 follow
Database To Look For Tissue-Specific Transcript Expression Of The Same Gene.
transcript
updated 4 months ago by • 0 • written 12.6 years ago by ▴ 800
7
votes
6
replies
2.6k
views
6 follow
Tool: Bioinformatics Docker Images Project (https://pegi3s.github.io/dockerfiles/)
containers docker
updated 4 months ago by ★ 2.4k • written 6.6 years ago by ▴ 10
1
vote
0
replies
946
views
Job: Looking for a mentor
health mentor informatics
updated 4 months ago by 153k • written 4 months ago by ▴ 10
0
votes
0
replies
1.2k
views
Job: Postdoc fellow - genetics, proteomics, single cell and bioinformatics, Indiana University, Indianapolis, USA
single-cell bioinformatics proteomics genetics
updated 4 months ago by 45k • written 4 months ago by • 0
0
votes
0
replies
439
views
Strand bias and placement bias in variant calls
Variant filter
updated 4 months ago by 166k • written 4 months ago by • 0
0
votes
0
replies
478
views
STARsolo for multiome GEX: trimming (--clip5pNbases) & whitelist handling
STARSolo multiome whitelist clip5pNbases
4 months ago by IrK ▴ 100
1
vote
8
replies
917
views
Featurecounts: Unexpected number of features
featurecounts
4 months ago by JourneyToAbyss ▴ 250
4
votes
13
replies
11k
views
7 follow
GVSA: problem with gene identifier
gvsa RNA-Seq gsea
updated 4 months ago by • 0 • written 8.4 years ago by ▴ 10
0
votes
0
replies
442
views
News: Workshop: Virtual Variant Detection, May 20-22
VariantDetection Workshop UConn
4 months ago by zsc25001 ▴ 10
1
vote
3
replies
813
views
Best way to combine biological replicate peaks?
ATAC-seq
updated 4 months ago by ★ 19k • written 4 months ago by • 0
1
vote
5
replies
860
views
Filtering HMMSCAN Domtblout Output when using Metagenomic Sequence as Input
hmmscan sequences domtblout metagenomic
updated 4 months ago by ★ 30k • written 4 months ago by • 0
0
votes
1
reply
549
views
I have doubts regarding conducting meta-analysis of differentially expressed genes
meta-analysis Differential-Gene-Expression
updated 4 months ago by 5.1k • written 4 months ago by • 0
1
vote
7
replies
1.1k
views
Create local Blast database alias with blastdb_aliastool fails
blast
updated 3 months ago by 153k • written 4 months ago by • 0
3
votes
2
replies
694
views
Why is this interaction result not significant in DESeq2
DEG DE interaction DESeq2 RNA-seq
updated 4 months ago by ▴ 820 • written 4 months ago by ▴ 10
0
votes
2
replies
600
views
Combining scRNA-seq datasets that have been processed differently
immunology Seurat
3 months ago by S • 0
6
votes
8
replies
13k
views
7 follow
WGCNA package in R: dendogram plot error
wgcna R
updated 4 months ago by 153k • written 8.6 years ago by ▴ 40
1
vote
1
reply
529
views
Problem with galaxy's Maxquant
Proteomics Maxquant Galaxy
updated 4 months ago by 153k • written 4 months ago by ▴ 10
0
votes
0
replies
456
views
Workflow for DE after high-resolution CibersortX deconvolution
CibersortX Deconvolution
4 months ago by Aspire ▴ 390
0
votes
0
replies
408
views
Is there any way to treat antibody titers as continuous data for microbiome analysis?
antibody-titers immunology microbiome
4 months ago by nmarin • 0
56
votes
11
replies
51k
views
When and why is bwa aln better then bwa mem?
aln comparison bwa mem
4 months ago by dariober 15k
2
votes
1
reply
490
views
How to deal polyploid and aneuploid sugarcane genome R570 for variant calling
aneuploid
updated 4 months ago by ★ 3.1k • written 4 months ago by ▴ 70
2
votes
2
replies
562
views
False positives annotation of Augustus?
Augustus training
updated 4 months ago by 15k • written 4 months ago by • 0
1
vote
2
replies
749
views
Mapping SNPs to genes
biomart SNP ensembl r gene
4 months ago by Nigussie • 0
0
votes
2
replies
547
views
Rockhopper Reference Genome Error
Rockhopper
4 months ago by ATS ▴ 10
0
votes
0
replies
424
views
What can cause Faststructure to produce really high K clusters as optimal (e.g. 12 - 14)
SNP vcf population
4 months ago by Drew ▴ 10
1
vote
7
replies
1.6k
views
Trouble finding datasets
GEO SRA
updated 4 months ago by ▴ 90 • written 23 months ago by ▴ 20
4
votes
2
replies
1.3k
views
Imputation server failing to see samples in VCF files
imputation VCF
updated 4 months ago by • 0 • written 23 months ago by ▴ 10
0
votes
3
replies
617
views
Read Mapping of Reads to Reference Genome Shows Extreme Bias
mapping read bwa-mem coverage
updated 4 months ago by 56k • written 4 months ago by • 0
0
votes
0
replies
416
views
News: Introduction to Python for Biologists (IPYB01)
Python
updated 4 months ago by 153k • written 4 months ago by ▴ 110
0
votes
0
replies
410
views
News: Machine Learning using Python (MLUP01)
Python
updated 4 months ago by 153k • written 4 months ago by ▴ 110
2
votes
2
replies
592
views
Interpreting a vcf file
variant vcf
updated 4 months ago by ★ 4.3k • written 4 months ago by ▴ 60
3
votes
0
replies
17k
views
Herald: The Biostar Herald for Tuesday, April 29, 2025
herald
4 months ago by Biostar 3.6k
5
votes
2
replies
841
views
Best choices for DGE and pathway enrichment analysis in single cell data using pseudobulk?
DEG GSEA single-cell pseudobulk
4 months ago by txema.heredia ▴ 250
6
votes
8
replies
3.1k
views
7 follow
Cluster annotation in single cell
Single-cell
updated 4 months ago by • 0 • written 2.0 years ago by ▴ 120
3
votes
6
replies
7.4k
views
Manual annotation of cell types in single cell RNA-seq
Seurat single_cell annotation
updated 4 months ago by • 0 • written 4.1 years ago by ▴ 240
3
votes
7
replies
885
views
Clustal Omega stand alone versus website percent identity matrix
clustal MSA identity percent
4 months ago by sorrymouse ▴ 120
0
votes
1
reply
483
views
PCA vs sparse PCA : differences in results
ML
updated 4 months ago by 45k • written 4 months ago by ▴ 20
121,885 results • Page 19 of 2438
Recent Votes
Comment: How to load sam.gz files on IGV?
Comment: How to load sam.gz files on IGV?
Comment: How to debug faulty BBmap clumpify command?
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Comment: Fastq reads to csv - How can I make a csv with the read number of several fastq
Answer: Fastq reads to csv - How can I make a csv with the read number of several fastq
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Recent Replies
Answer: Conversion of Gene Name to Ensembl ID by Thanujay S • 0
Hey! A bit late to the party! I’ve built a simple wrapper (named SESC) around biomaRt to streamline Ensembl ID conversions. It supports bo…
Comment: Variant analysis for mouse WES by barslmn ★ 2.4k
You can try Ensembl VEP which can also annotate organism other than human.
Comment: Variant analysis for mouse WES by GenoMax 153k
> I’d like to analyze using a package similar to maftools. Looks like `maftools` works with mouse data: https://github.com/PoisonAlien/ma…
Comment: Is this PCA plot correct?? by GenoMax 153k
It would also help to add information about what kind of data this is and what you did to the data to get to this point.
Comment: How to load sam.gz files on IGV? by marongiu.luigi ▴ 760
I can now see the alignment, thank you.
Comment: How to load sam.gz files on IGV? by marongiu.luigi ▴ 760
Thank you, it worked!
Comment: Fungal Genome Assembly: In a messed up situation by SomeOne ▴ 240
HI, Just to add some information here. I tried that merging of Hifi + ONT data then assembly using hifiasm --ont. It didnot work as expect…
Comment: Is this PCA plot correct?? by dthorbur ★ 3.1k
In addition to these comments, I would suggest checking other PCs, the first two PCs only explain a combined 39% of the variance. Since you…
Answer: Is this PCA plot correct?? by ATpoint 89k
Assuming that the PCA was "technically" done correctly (bulletproof way would be to use plotPCA from DESeq2 as a wrapper) -- then the separ…
Answer: Is this PCA plot correct?? by Mensur Dlakic ★ 30k
I can tell you what you already know: this result is unexpected. Nobody can tell you whether the plot is "correct" or not - it depends on w…
Comment: Strange pattern in pct_counts_mt from bin2cell deconvolved VisiumHD data by danielpintard ▴ 10
Update: take a look at the plot below ![enter image description here][1] [1]: /media/images/2a939635-9920-46b9-9b15-6028022d
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
Experiments with global changes in the RNA production usually need spike-in normalization to estimate the library sizes. Questions about th…
Comment: Best way to do protein structure guided similarity search? by Dunois ★ 2.9k
`Foldseek` perhaps? They have a server for it too: [https://search.foldseek.com/][1] . [1]: https://search.foldseek.com/
Comment: Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates by GenoMax 153k
As of Sept 2025 this script is coded only for human gene symbol lookups as noted on GitHub page, with a promise to make it flexible later.
Comment: How to debug faulty BBmap clumpify command? by GenoMax 153k
> worked flawlessly on another machine If you rearranged/moved the contents of BBMap software bundle from default, it can lead to the "cla…
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