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121,885 results • Page 20 of 2438
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3
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2.6k
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Has the TRON Expression Atlas closed?
RNA-Seq cell-line
updated 4 months ago by • 0 • written 6.3 years ago by ★ 1.7k
0
votes
0
replies
362
views
News: online course: Machine Learning Methods for Longitudinal Data
R LongitudinalData Epidemiology GeneExpression Forecasting
4 months ago by Physalia-courses ★ 2.6k
1
vote
3
replies
683
views
deseq2 batch effect correction
R batch-effects Deseq2
updated 4 months ago by ★ 1.6k • written 4 months ago by • 0
2
votes
22
replies
2.0k
views
How to generate identiy score between aligned sequences with Mauve?
identity score alignment mauve
updated 5 weeks ago by 153k • written 4 months ago by ▴ 760
1
vote
3
replies
532
views
Error in deconvolution using CIBERSORTx
CIBERSORTx deconvolution
updated 4 months ago by ▴ 390 • written 4 months ago by • 0
3
votes
7
replies
1.9k
views
Tool: A c library for reading and writing sequences in fasta and fastq format.
seqio
4 months ago by dwpeng ▴ 120
0
votes
0
replies
452
views
pLoF variants for gnomAD v.4
gnomAD pLoF variants grch38
4 months ago by Damianos P. Melidis ▴ 60
0
votes
2
replies
856
views
Genomic Data Portal (GDC) download a given a link file
GDC R TCGA TCGAbiolinks maftools
updated 4 months ago by ★ 1.3k • written 4 months ago by • 0
0
votes
1
reply
545
views
Finding matched RNA-seq and Ribo-seq datasets for Nicotiana benthamiana under the same condition
rna-seq ribo-seq translation-efficiency dataset-search nicotiana-benthamiana
updated 4 months ago by 7.9k • written 4 months ago by • 0
3
votes
5
replies
1.0k
views
Limma model gives weird results
model multivariate Limma
7 weeks ago by leranwangcs ▴ 150
5
votes
5
replies
1.2k
views
How to download the entire C. elegans genome from WormBase into Excel with automated gene descriptions
Gene Wormbase Celegans
4 months ago by bioinformatics_rk ▴ 10
0
votes
0
replies
796
views
Job: Postdoctoral Research Fellow, multi-omics, Univ of Nebraska Medical Center, Omaha, NE, USA
microbiome Postdoc metagenome transcriptome metabolome
updated 4 months ago by 153k • written 4 months ago by • 0
0
votes
0
replies
465
views
How to deal with the clusterProfiler analysis result?
clusterProfiler
updated 4 months ago by 153k • written 4 months ago by ▴ 10
0
votes
0
replies
519
views
News: Genome Bioinformatics Summer School: OMICSS-25
training bioinformatics school
4 months ago by Lilit • 0
1
vote
2
replies
640
views
Unable to find mitochondrial genes in latest rat genome(GRCr8)
seurat genome mitochondrialgenes NCBI Singlecell
4 months ago by dxj294 • 0
0
votes
0
replies
437
views
Haplotype reference for ShapeIt (ShapeIt5)
Phasing
4 months ago by evan.kransdorf • 0
6
votes
6
replies
950
views
Pre-Made STAR Index for mm10 Mouse Genome
STAR
updated 4 months ago by 7.9k • written 4 months ago by • 0
1
vote
1
reply
512
views
The volcano plot shows data with an arm-shaped enrichment.
volcanoplot
updated 4 months ago by 89k • written 4 months ago by • 0
0
votes
0
replies
368
views
Tool: GENetLib: A Python Library for Gene–environment Interaction Analysis via Deep Learning
gene-environment interaction analysis
4 months ago by Barry • 0
9
votes
10
replies
1.3k
views
STAR vs. Kallisto
STAR kallisto alignment RNA-Seq mapping
updated 4 months ago by ★ 7.7k • written 4 months ago by ▴ 80
1
vote
1
reply
521
views
News: Phylogenetic Comparative Methods in R (12–16 May, Online) - only 2 seats left
R Phylogenetic-Comparative-Methods
4 months ago by Physalia-courses ★ 2.6k
0
votes
1
reply
605
views
Biostar handbook
Handbook Biostar
updated 4 months ago by 153k • written 4 months ago by • 0
2
votes
2
replies
1.8k
views
pangenome - Create a diagram venn
roary grep awk pangenome venn
updated 4 months ago by ▴ 40 • written 2.4 years ago by • 0
4
votes
4
replies
842
views
Addressing two nuisance factors in RNAseq
bulkRNAseq
updated 4 months ago by 89k • written 4 months ago by ▴ 220
1
vote
5
replies
1.1k
views
DRAGEN FILTER
dragen variant-calling
updated 4 months ago by 153k • written 4 months ago by ▴ 10
1
vote
1
reply
742
views
Interpretation of the results: PCA
proteomics PCA
4 months ago by Ariadna ▴ 20
3
votes
5
replies
993
views
How to check normal BAM_files before create a Panel Of Normals (PoN)
GATK variant_calling PoN
4 months ago by AIMAR ▴ 70
0
votes
1
reply
504
views
how to handle infinite M-values in methylation array data
M-value methylation infinite array
updated 4 months ago by ★ 2.1k • written 4 months ago by • 0
1
vote
3
replies
2.1k
views
Free and redistributable genomic data sets?
data software-development genomics
written 9.6 years ago by ▴ 170
3
votes
6
replies
1.6k
views
Rna-seq data
data rna-seq
updated 4 months ago by ▴ 90 • written 3.5 years ago by ▴ 60
6
votes
3
replies
1.4k
views
RNAseq example data
expression RNA-Seq data next-gen
updated 4 months ago by ▴ 90 • written 5.0 years ago by ▴ 10
0
votes
1
reply
674
views
Transcript_id with "-0" after "flair collapse"
flair
updated 4 months ago by 153k • written 10 months ago by • 0
0
votes
0
replies
440
views
Can I use glucose measured using two different devices in my study?
normalization standardization transformation
4 months ago by Faith ▴ 50
1
vote
3
replies
1.3k
views
Snakemake - pipeline shut down without error
snakemake
4 months ago by bhumm ▴ 200
3
votes
2
replies
682
views
Source for `transcript_name` in GTFs
GTF
updated 4 months ago by ▴ 30 • written 4 months ago by ▴ 130
5
votes
5
replies
1.5k
views
Tool: Lightweight bash pipeline for ddRADseq read pre-processing, demultiplexing, and de-duplication using cutadapt
rad-seq ddRADseq demultiplexing deduplication
4 months ago by Rafal ▴ 70
0
votes
2
replies
580
views
How to normalised DNA sequencing depth for genomic variant discovery ?
normalisation read-depth variant-calling
updated 4 months ago by 45k • written 4 months ago by ▴ 70
2
votes
4
replies
808
views
RNASeq featureCounts Help Needed
fungi featurecounts RNASeq
4 months ago by SomeOne ▴ 240
0
votes
1
reply
514
views
PAUP* error with exporting result file
PAUP SVDquartet
updated 4 months ago by ★ 1.7k • written 4 months ago by • 0
0
votes
1
reply
557
views
I need to convert Axiom output to PLINK format I did not find annotation.db
Axiom PLINK apt-format-result
updated 4 months ago by 153k • written 4 months ago by • 0
1
vote
3
replies
697
views
How to merge heterogeneously normalized RNA-seq datasets for meta-analysis?
normalization rna-seq
updated 4 months ago by 89k • written 4 months ago by • 0
1
vote
1
reply
590
views
Tool: I packaged some tools in python pypi for Windows (fastqc, bowtie2, samtools)
python pypi
updated 4 months ago by ★ 2.9k • written 4 months ago by ▴ 10
0
votes
4
replies
793
views
Transcript ID
id transcript
updated 4 months ago by 3.4k • written 4 months ago by • 0
0
votes
2
replies
626
views
Galaxy + RStudio
R RNA-seq RStudio
updated 4 months ago by ★ 1.7k • written 4 months ago by • 0
8
votes
18
replies
3.8k
views
8 follow
How to limit fasta header to 40 characters?
unix seqkit fasta
updated 4 months ago by ▴ 330 • written 2.0 years ago by • 0
1
vote
2
replies
650
views
Transcript level quantification and gene length scaling for rRNA depleted libraries
RNASeq
updated 4 months ago by ★ 7.7k • written 4 months ago by ▴ 10
0
votes
0
replies
416
views
Model diagnostics for GAM (Generalised Additive Model)
gam mgcv generalized-additive-model
4 months ago by Tuấn Anh • 0
2
votes
5
replies
1.6k
views
Forum: Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
biotech startup
updated 4 months ago by 4.7k • written 5 months ago by ▴ 10
1
vote
1
reply
541
views
landscape of RNA types and their functions/ scRNA
transcriptomics scRNA biology
updated 4 months ago by 89k • written 4 months ago by ▴ 20
4
votes
7
replies
1.2k
views
Is vg toolkit suitable for haplotype calling?
pangenome haplotype vg
updated 4 months ago by ▴ 760 • written 4 months ago by • 0
121,885 results • Page 20 of 2438
Recent Votes
Comment: How to load sam.gz files on IGV?
Comment: How to load sam.gz files on IGV?
Comment: How to debug faulty BBmap clumpify command?
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Comment: Fastq reads to csv - How can I make a csv with the read number of several fastq
Answer: Fastq reads to csv - How can I make a csv with the read number of several fastq
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Recent Replies
Comment: Is this PCA plot correct?? by GenoMax 153k
It would also help to add information about what kind of data this is and what you did to the data to get to this point.
Comment: How to load sam.gz files on IGV? by marongiu.luigi ▴ 760
I can now see the alignment, thank you.
Comment: How to load sam.gz files on IGV? by marongiu.luigi ▴ 760
Thank you, it worked!
Comment: Fungal Genome Assembly: In a messed up situation by SomeOne ▴ 240
HI, Just to add some information here. I tried that merging of Hifi + ONT data then assembly using hifiasm --ont. It didnot work as expect…
Comment: Is this PCA plot correct?? by dthorbur ★ 3.1k
In addition to these comments, I would suggest checking other PCs, the first two PCs only explain a combined 39% of the variance. Since you…
Answer: Is this PCA plot correct?? by ATpoint 89k
Assuming that the PCA was "technically" done correctly (bulletproof way would be to use plotPCA from DESeq2 as a wrapper) -- then the separ…
Answer: Is this PCA plot correct?? by Mensur Dlakic ★ 30k
I can tell you what you already know: this result is unexpected. Nobody can tell you whether the plot is "correct" or not - it depends on w…
Comment: Strange pattern in pct_counts_mt from bin2cell deconvolved VisiumHD data by danielpintard ▴ 10
Update: take a look at the plot below ![enter image description here][1] [1]: /media/images/2a939635-9920-46b9-9b15-6028022d
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
Experiments with global changes in the RNA production usually need spike-in normalization to estimate the library sizes. Questions about th…
Comment: Best way to do protein structure guided similarity search? by Dunois ★ 2.9k
`Foldseek` perhaps? They have a server for it too: [https://search.foldseek.com/][1] . [1]: https://search.foldseek.com/
Comment: Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates by GenoMax 153k
As of Sept 2025 this script is coded only for human gene symbol lookups as noted on GitHub page, with a promise to make it flexible later.
Comment: How to debug faulty BBmap clumpify command? by GenoMax 153k
> worked flawlessly on another machine If you rearranged/moved the contents of BBMap software bundle from default, it can lead to the "cla…
Answer: Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates by Thanujay S • 0
Hey! A bit late to the party! I’ve built a simple wrapper (named SESC) around biomaRt to streamline Ensembl ID conversions. It supports bo…
Comment: How to debug faulty BBmap clumpify command? by marongiu.luigi ▴ 760
It makes sense since the command worked flawlessly on another machine... Thanks
Comment: Finding RNA genes associated with X protein expression in CITE-seq Seurat object by ATpoint 89k
One way would be to make a correlation test between every pair of gene-ADT, and test for significance. Another would be to run something li…
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