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121,888 results • Page
21 of 2438
Sort: Rank
Rank
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Votes
Replies
0
votes
0
replies
416
views
Model diagnostics for GAM (Generalised Additive Model)
gam
mgcv
generalized-additive-model
4 months ago by
Tuấn Anh
• 0
2
votes
5
replies
1.6k
views
Forum:
Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
biotech
startup
updated 4 months ago by
Darked89
4.7k • written 5 months ago by
Novoo
▴ 10
1
vote
1
reply
542
views
landscape of RNA types and their functions/ scRNA
transcriptomics
scRNA
biology
updated 4 months ago by
ATpoint
89k • written 4 months ago by
Ariadna
▴ 20
4
votes
7
replies
1.2k
views
Is vg toolkit suitable for haplotype calling?
pangenome
haplotype
vg
updated 4 months ago by
Jordan M Eizenga
▴ 760 • written 4 months ago by
Pau
• 0
0
votes
0
replies
392
views
Dfam annotations
dfam
4 months ago by
frarodmar17
• 0
0
votes
3
replies
899
views
miRNA alignment and count generation
aligment
Mapping
Bowtie
miRNAs
updated 4 months ago by
i.sudbery
22k • written 5 months ago by
omicon
▴ 40
1
vote
2
replies
558
views
Cytoscape Node Size Mapping
Cytoscape
4 months ago by
William
▴ 20
1
vote
2
replies
629
views
Deeptools: Custom gcbias plots in R possible?
computegcbias
deeptools
4 months ago by
RJDan
• 0
0
votes
3
replies
1.2k
views
HOMER Motif Analysis-- homer2 error
rna-seq
homer
updated 4 months ago by
ATpoint
89k • written 19 months ago by
HypoGG
• 0
4
votes
0
replies
17k
views
Herald:
The Biostar Herald for Monday, April 21, 2025
herald
4 months ago by
Biostar
3.6k
0
votes
4
replies
955
views
Forum:
ELISA‑Focused Lab Management & Analysis App – Would You Use It?
biotech
startup
updated 4 months ago by
Ram
45k • written 4 months ago by
Novoo
▴ 10
0
votes
0
replies
809
views
Job:
Research Fellow in Cancer Evolution (Deadline 30 Apr 2025)
Cancer-Phylogenetics
Chromosomal-Instability
updated 4 months ago by
Ram
45k • written 4 months ago by
Bingxin
• 0
2
votes
10
replies
2.0k
views
Proper preprocessing for ML after limma, quantile normalization and log2 transformation: Is standardization still necessary?
featureselection
microarray
preprocessing
updated 4 months ago by
Mensur Dlakic
★ 30k • written 5 months ago by
Sib
▴ 80
0
votes
0
replies
432
views
How to get gene count and transcript count from Stringtie
Stringtie
updated 5 months ago by
GenoMax
153k • written 5 months ago by
Abieskawa
• 0
1
vote
1
reply
725
views
Any recommendation for calculating Fu and Li's D using RStudio?
PopGenome
updated 4 months ago by
Michael
56k • written 5 months ago by
Chatchapon
• 0
1
vote
4
replies
955
views
Running out of disc space with wsl2
Memory
WSL2
capacity
Disc
updated 5 months ago by
Mensur Dlakic
★ 30k • written 5 months ago by
vladimir_vinarsky
• 0
0
votes
2
replies
718
views
Filtering vcf file for variants - including non-selected variants
bedtools
calling
variant
bcftools
5 months ago by
andrebolerbarros
• 0
0
votes
4
replies
1.0k
views
UCSC's NCBI RefSeq Track tables: header differences
ucsc-genome-browswer
refseq
ncbi
5 months ago by
Synanth
• 0
3
votes
2
replies
1.8k
views
How do you do differential splicing using edgeR command diffSpliceDGE?
differential-splicing
diffSpliceDGE
edger
updated 5 months ago by
Gordon Smyth
★ 8.3k • written 3.6 years ago by
Assa Yeroslaviz
★ 1.9k
0
votes
0
replies
507
views
sequenced noise elimination in searching for snp
snp
sequencing
virus
5 months ago by
gagi1993
• 0
0
votes
1
reply
643
views
Issue with Agilent 2100 BioAnalyzer HS DNA Assay Trace
library-preparation
DNA
bioanalyzer
updated 5 months ago by
GenoMax
153k • written 5 months ago by
Beatrice
• 0
1
vote
2
replies
1.2k
views
QIAseq 16S/ITS Screening Panel Primers?
16s
primers
metagenomics
ITS
updated 5 months ago by
GenoMax
153k • written 3.6 years ago by
Isaac
• 0
3
votes
2
replies
1.0k
views
Analysing gene CNV from TCGA using TCGAbiolinks
TCGA
4 months ago by
Matt
• 0
1
vote
3
replies
897
views
How to use LOEUF plugin in VEP?
LOEUF
VEP
updated 5 months ago by
GenoMax
153k • written 5 months ago by
Sd
• 0
0
votes
0
replies
825
views
Trouble with CIBERSORTx: All P-values > 0.05, Low Correlation, High RMSE – What Could Be Going Wrong?
R
CIBERSORTx
CIBERSORT
script
updated 5 months ago by
GenoMax
153k • written 5 months ago by
Pumla
• 0
0
votes
1
reply
658
views
How can I identify genes with the MSTRG notation?
R
stringtie
RNA-Seq
updated 5 months ago by
GenoMax
153k • written 5 months ago by
pinheirofabiano
▴ 130
0
votes
0
replies
2.1k
views
dittoHeapmap didn't work in my data set(error code :Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds)
dittoseq
scRNAseq
updated 5 months ago by
ATpoint
89k • written 5 months ago by
kayah
▴ 20
1
vote
3
replies
852
views
Visualise duplications and inversions
inversions
duplications
updated 5 months ago by
cmdcolin
★ 4.3k • written 5 months ago by
priya.bmg
▴ 70
1
vote
3
replies
812
views
Exon-level counts via featureCounts
diffSpliceDGE
exon
RNASeq
featureCounts
edgeR
updated 4 months ago by
rfran010
★ 1.6k • written 5 months ago by
n_navy
▴ 10
0
votes
5
replies
1.0k
views
Picard : Bait_interval and Target_interval
Picard
Bed
read-depth
coverage
updated 5 months ago by
Ram
45k • written 5 months ago by
AIMAR
▴ 70
3
votes
2
replies
791
views
Does vg giraffe output secondary and supplimentary alignments?
vg
giraffe
5 months ago by
lushjia
• 0
0
votes
0
replies
518
views
Question about Calculation of Dietary index in the NHANES Database
index
DI-GM
Dietary
NHANES
5 months ago by
城玮
• 0
1
vote
1
reply
678
views
Detection SNPs and Indels Bacteria
SNPs
updated 5 months ago by
Istvan Albert
103k • written 5 months ago by
Eltercertopico
• 0
1
vote
4
replies
833
views
protease candidates for my protein of interest
cleaving-site
proteases
protein
5 months ago by
Fatemeh
▴ 50
1
vote
3
replies
763
views
Different number of fragments after doublets removal in each run
ArchR
5 months ago by
Bioinformatics_16
• 0
1
vote
2
replies
665
views
Seeking Guidance on Next Steps for DNA Methylation Biomarker Screening in Cancer Prognosis
early-cancer-screening
TCGA
Epigenomics
DNA-Methylation
cancer-prognosis
5 months ago by
Riley J
• 0
0
votes
1
reply
616
views
Help with Panel of Normal (PON)
somatic-mutation
PoN
updated 5 months ago by
Ram
45k • written 5 months ago by
TJ
• 0
9
votes
5
replies
1.3k
views
6 follow
Why don't I see people calculating FPKM from normalized read counts?
normalization
RNA-seq
updated 5 months ago by
kalavattam
▴ 380 • written 5 months ago by
shelkmike
★ 1.8k
1
vote
9
replies
1.7k
views
Error during running wf-bacterial-genome (nextflow run epi2me-labs/wf-bacterial-genomes).
EPI2ME
MEDAKA
updated 5 months ago by
GenoMax
153k • written 5 months ago by
Anurag
• 0
0
votes
0
replies
490
views
freebayes with pools of different number of individuals
freebayes
poolseq
5 months ago by
Jeanlain
• 0
0
votes
3
replies
786
views
Insight into Trimmomatic
Trimmomatic
Trimming
Reads
updated 5 months ago by
GenoMax
153k • written 5 months ago by
jh5ym
• 0
1
vote
3
replies
937
views
Trouble when uploading FASTQ files on NCBI
rnaseq
ncbi
5 months ago by
Gerard
▴ 20
1
vote
4
replies
1.0k
views
SyntaxError in file /snakefile, line 22: invalid decimal literal: None
python
snakemake
updated 5 months ago by
Jesse
▴ 880 • written 5 months ago by
Ana
▴ 10
3
votes
2
replies
993
views
News:
Building an mmCIF parser for enzyme structure analysis — feedback & ideas welcome!
mmcif
5 months ago by
Shravya
• 0
0
votes
0
replies
569
views
News:
Course: Introduction to Genome Annotation (Online, 19–22 May) - last call
Gene-Prediction
Genome-Annotation
Gene-Models
4 months ago by
Physalia-courses
★ 2.6k
0
votes
1
reply
682
views
Error with running cellranger-atac count
cellranger
atac
single-cell
updated 5 months ago by
Ram
45k • written 5 months ago by
Khôi
• 0
0
votes
2
replies
822
views
HIC-pro with Forward and reverse reads not paired even when I use their test data.
HIC-pro
5 months ago by
Aki
▴ 20
1
vote
1
reply
774
views
Using DEXseq on kallisto tsv outputs ?
alignement
DEXseq
kallisto
updated 5 months ago by
Gordon Smyth
★ 8.3k • written 5 months ago by
Gerard
▴ 20
0
votes
1
reply
1.1k
views
Job:
2025 Arrowhead AI/LLM for Computational Biology and Data Science Internship
intern
updated 9 weeks ago by
Simon
• 0 • written 5 months ago by
Shicheng Guo
★ 9.6k
1
vote
2
replies
1.0k
views
ChIP-seq gene blacklist for Rattus norvegicus
rat
blacklist
ChIP-seq
updated 5 months ago by
GenoMax
153k • written 17 months ago by
Thomas
• 0
121,888 results • Page
21 of 2438
Recent Votes
Comment: Is this PCA plot correct??
Comment: How to load sam.gz files on IGV?
Comment: How to load sam.gz files on IGV?
Comment: How to debug faulty BBmap clumpify command?
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Comment: Fastq reads to csv - How can I make a csv with the read number of several fastq
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★ 8.3k
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Comment: Yeast reference-based genome assembly
by
GenoMax
153k
> The gene originates from yeast, What does this mean? Are you putting a gene from a different genus/species into some other yeast? Can yo…
Comment: Variant analysis for mouse WES
by
alba
• 0
Hi, thanks for the suggestion! I’m aware of Ensembl VEP, and in fact, I already have my VCFs annotated with VEP. The challenge I’m facing i…
Answer: Structural Variant identification on pangenome graphs
by
colindaven
7.9k
There might be something here for you : https://github.com/colindaven/awesome-pangenomes Otherwise, I know creating a pangenome with `mi…
Comment: replace gene names in gff file
by
ja569116
• 0
Hi @juke34 Is it possible to specify the prefix/ custom gene name to rename all the genes in the gff3 file with AGAT, so that the differen…
Answer: Yeast reference-based genome assembly
by
colindaven
7.9k
Nanopore reads are long enough to create a full assembly. Why not first try to create a whole genome assembly with a tool like Flye if you …
Comment: Variant analysis for mouse WES
by
alba
• 0
I saw that but it looks like it only works for trinucleotideMatrix() specifically, I was looking to be able to generate rainfallPlot(), for…
Comment: RTG (Real Time Genomics) docker image - Problem dealing with different VCFs
by
stuckinanendlessfebruary
• 0
Dr. Jeremy, Thank you sincerely for your time! I wanted to close the loop: the issue appears to have been the RTG Tools Docker image versi…
Answer: Conversion of Gene Name to Ensembl ID
by
Thanujay S
• 0
Hey! A bit late to the party! I’ve built a simple wrapper (named SESC) around biomaRt to streamline Ensembl ID conversions. It supports bo…
Comment: Variant analysis for mouse WES
by
barslmn
★ 2.4k
You can try Ensembl VEP which can also annotate organism other than human.
Comment: Variant analysis for mouse WES
by
GenoMax
153k
> I’d like to analyze using a package similar to maftools. Looks like `maftools` works with mouse data: https://github.com/PoisonAlien/ma…
Comment: Is this PCA plot correct??
by
GenoMax
153k
It would also help to add information about what kind of data this is and what you did to the data to get to this point.
Comment: How to load sam.gz files on IGV?
by
marongiu.luigi
▴ 760
I can now see the alignment, thank you.
Comment: How to load sam.gz files on IGV?
by
marongiu.luigi
▴ 760
Thank you, it worked!
Comment: Fungal Genome Assembly: In a messed up situation
by
SomeOne
▴ 240
HI, Just to add some information here. I tried that merging of Hifi + ONT data then assembly using hifiasm --ont. It didnot work as expect…
Comment: Is this PCA plot correct??
by
dthorbur
★ 3.1k
In addition to these comments, I would suggest checking other PCs, the first two PCs only explain a combined 39% of the variance. Since you…
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