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Recent Replies
Comment: Structural Variant identification on pangenome graphs
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That's a very comprehensive list! Thanks for sharing!
`minigraph` better suits my needs because all I need is SVs for my genomes. As far a…
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I have ~2.01 Gb of ONT data and the target genome is ~20–23 Mb (90–100× coverage). My ONT read N50 is ~3.8 kb, so contiguity may be limited…
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By the way, these errors are not unique. If you look through the `magpurify` GitHub issues, both types have been reported already.
- https…
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There is absolutely no chance that a contig labeled `k127_4584534` doesn't exist in your fasta files. These names are not made up out of th…
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Yes the --prefix Option exists. There is no count per chromosome. You can do it by splitting your input and analyse one sequence at a time…
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You could open a new issue and ask the developers of `maftools` if this was something they can add.
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To me that sounds like an error in sequence header formatting. Maybe some contig headers are repeated? Or their sequences are short or miss…
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A general answer is to always Google the error message. Hopefully you do that in the future. This is the outcome of Googling `AttributeErro…
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