Limit : all time
all time today this week this month this year
121,891 results • Page 23 of 2438
Sort: Rank
Rank Views Votes Replies
0
votes
8
replies
1.2k
views
Discrepancy between positions on IGV and NCBI's PrimerBLAST
igv primer blast
5 months ago by Rozita ▴ 40
0
votes
2
replies
560
views
Steps for meta-analysis
Meta-Analysis differential-expression
updated 5 months ago by 45k • written 5 months ago by • 0
5
votes
1
reply
593
views
News: The IGB team needs your help! Write a letter of support to keep the Integrated Genome Browser running!
IGB Integrated-Genome-Browser Funding
updated 5 months ago by ★ 2.0k • written 5 months ago by ▴ 900
0
votes
0
replies
415
views
how pd tag were defined in gaf file
vg
5 months ago by chuanj8848 • 0
5
votes
4
replies
1.2k
views
SRA Toolkit - three fastq files - which is which?
scrna sratoolkit
updated 4 months ago by 153k • written 5 months ago by • 0
1
vote
0
replies
18k
views
Herald: The Biostar Herald for Wednesday, April 09, 2025
herald
5 months ago by Biostar 3.6k
6
votes
6
replies
1.1k
views
Methods for directional pathway analysis of DEGs?
Pathway-analysis ORA GSEA Limma
updated 5 months ago by ★ 8.3k • written 5 months ago by ▴ 10
0
votes
0
replies
491
views
GTDB-tk classify_wf
GTDB-tk classification taxonomic
5 months ago by pranjalarun10 • 0
0
votes
1
reply
780
views
Help finding proteases that most likely cleaved a peptide from a full-length protein
R peptides proteasix
updated 5 months ago by ▴ 50 • written 23 months ago by • 0
0
votes
1
reply
1.2k
views
ADMIXTOOLS: qp3pop fatal error (probably missing pop)
qp3pop f3test admixtools
updated 5 months ago by • 0 • written 3.2 years ago by • 0
0
votes
2
replies
699
views
Annotate GFA with coverage depth
vg
5 months ago by elcortegano ▴ 210
3
votes
4
replies
1.6k
views
Query coverage high, E-value low, and identity low - Blastp results interpretation and article recommended?
sequence-analysis blastp protein
updated 5 months ago by ★ 30k • written 5 months ago by • 0
0
votes
0
replies
353
views
Need Help Regarding Back-Splicing Junction Coordinates in CIRI2 Output
circRNA CIRI2
updated 5 months ago by 153k • written 5 months ago by • 0
1
vote
6
replies
1.0k
views
Short reads to identify stuctural variants
SV long-read short-read
5 months ago by priya.bmg ▴ 70
0
votes
0
replies
573
views
Best approach for SNP calling in tumor single-cell multiome data (scRNA-seq + scATAC-seq) for CNV analysis
variant SNP single-cell
5 months ago by nilaylale88 • 0
0
votes
0
replies
390
views
News: News:Workshop:Virtual Genome Assembly, April 15-17
virtual-workshop Genome-Assembly UConn
updated 5 months ago by 45k • written 5 months ago by ▴ 10
0
votes
3
replies
608
views
C.reinhardtii single-cell Seurat object - gene names instead of loci
loci Chlamydomonas single-cell
updated 5 months ago by 153k • written 5 months ago by ▴ 10
1
vote
4
replies
773
views
Snakemake Global Environment Container
Snakemake Conda Singularity
5 months ago by meetmet ▴ 10
0
votes
2
replies
691
views
GTF repeatmasker annotation file
repeatmasker GTF
updated 5 months ago by ★ 1.6k • written 5 months ago by • 0
0
votes
2
replies
1.6k
views
Searching for online tools to prepare mitochondrial codon usage
genome
updated 5 months ago by ▴ 30 • written 5.1 years ago by • 0
1
vote
1
reply
453
views
Getting sequences fragments using pysam
sequencing pysam reads wgs
updated 5 months ago by 22k • written 5 months ago by • 0
6
votes
9
replies
3.5k
views
Does EnhancedVolcano() supports crosstalk()?
EnhancedVolcano crosstalk R ggplot
updated 5 months ago by 153k • written 5.6 years ago by ▴ 100
0
votes
1
reply
497
views
How to select GEO datasets for differential expression analysis using GEO2R
GEO DEGs GEO2R
updated 5 months ago by 89k • written 5 months ago by • 0
0
votes
0
replies
469
views
Blog: Unlocking the Cellular Universe: The Importance of Single-Cell Sequencing in Animal and Plant Research
Single-cell
5 months ago by Novogene ▴ 510
0
votes
4
replies
1.1k
views
PopGenome lost individual information
PopGenome
updated 5 months ago by 3.4k • written 18 months ago by • 0
2
votes
2
replies
665
views
Question About Handling Technical Replicates in ATAC-seq
technical-replicate atacseq
7 weeks ago by LuciaNhu ▴ 10
12
votes
16
replies
20k
views
8 follow
How to convert vcf to 23andme format
genome sequencing SNP
updated 5 months ago by • 0 • written 8.0 years ago by ▴ 390
0
votes
7
replies
957
views
Poor alignment rates using Bowtie
aligment bowtie2 bowtie miRNAs
updated 5 months ago by 103k • written 5 months ago by ▴ 40
1
vote
5
replies
776
views
Polishing raw nanopore reads with Pacbio
polishing assembly
5 months ago by samuel.a.odonnell ▴ 600
2
votes
5
replies
1.0k
views
bbduk.sh trimming to BAM output file
bbduk.sh
updated 4 weeks ago by • 0 • written 5 months ago by • 0
0
votes
3
replies
666
views
Identifying domain of long-read assembled contig
longread taxonomy identification contig
updated 5 months ago by ★ 30k • written 5 months ago by ▴ 10
0
votes
1
reply
753
views
Why does Radian run so much slower than vanilla R?
R Python Radian VS-Code
updated 5 months ago by 103k • written 5 months ago by • 0
7
votes
9
replies
2.8k
views
About the Tool FASTP
Quality-control reads fastp
updated 5 months ago by ★ 1.8k • written 5 months ago by ▴ 70
0
votes
0
replies
345
views
Significant SNPs with the same effect in FarmCPU
effect-size gwas FarmCPU likage-disequilibrium
5 months ago by AndrMod • 0
6
votes
11
replies
1.5k
views
Larger genome size than expected-please help
genome nanopore size minimap2
5 months ago by alexandrakortsi • 0
0
votes
0
replies
769
views
Job: Postdoc ML/AI in Genomics & Bioinformatics at Duke University
Postodoc Genomics AI
5 months ago by alwayshope ▴ 40
0
votes
1
reply
471
views
analyze gene expression of 3 genes in RNA-Seq data
R RNA-Seq
updated 5 months ago by 89k • written 5 months ago by ▴ 130
1
vote
1
reply
676
views
methRead takes too long
MethylKit
updated 5 months ago by ▴ 10 • written 13 months ago by ▴ 140
0
votes
0
replies
330
views
rrvgo::getGoSize error
ReViGO GO-terms rrvgo
updated 5 months ago by 45k • written 5 months ago by ▴ 10
0
votes
0
replies
356
views
Genotype Imputation for VCF File via API Using R ?
Genotype-Imputation VCF API
5 months ago by Ahmed Jaber • 0
0
votes
0
replies
321
views
How label Group list after integratin scRNA-seq and scATAC-seq data
ArchR
5 months ago by Bioinformatics_16 • 0
0
votes
1
reply
767
views
Forum: Questions on what to focus on in the next 3-4 years of my research
Career offtopic path
5 months ago by Abiodun • 0
0
votes
7
replies
1.0k
views
Error in importing data from 10x genomics into RStudio
H5 file scRNA RStudio
5 months ago by himanshu0102 • 0
1
vote
2
replies
545
views
WGS for CNV and Aneuploidy analysis
CNV Aneuploidy WGS
5 months ago by bioinfo1990 ▴ 10
0
votes
0
replies
379
views
News: Course: Phylogenetic Comparative Methods in R – May 12–16 (Online)
R Phylogenetic-Comparative-Methods Ultrametric-Phylogenies
updated 5 months ago by 45k • written 5 months ago by ★ 2.6k
2
votes
2
replies
655
views
Merge and unique multiple complete sam files from identical fastq files
samtools aligment sambamba WGBS WGS
5 months ago by JustinZhang ▴ 140
0
votes
1
reply
861
views
Issues with T2T in pigeon prepare from isoseq
long-read isoseq rna-seq
updated 5 months ago by 45k • written 12 months ago by • 0
1
vote
1
reply
706
views
How to obtain TPM data after batch effect correction from count data obtained using RSEM
STAR RNA-seq Batch RSEM effect
updated 5 months ago by ★ 8.3k • written 5 months ago by ▴ 190
2
votes
2
replies
841
views
Missing short indels from vcf
bcftools shortindels mpileup
9 weeks ago by kbranger • 0
1
vote
2
replies
702
views
Choosing the best clustering method for a certain methylation data
DMR k-means hierarchical clustering methylation
updated 5 months ago by 11k • written 5 months ago by • 0
121,891 results • Page 23 of 2438
Recent Votes
Comment: Tool 'sra_source' does not exist.
Answer: TCGA -derived Large RangeSummarizeExperient file
Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
Answer: Structural Variant identification on pangenome graphs
Answer: Stringtie de novo VS reference guided (-G)
Answer: Yeast reference-based genome assembly
How to Identify Conserved 21-mers Across TE Insertions in Drosophila?
Recent Locations • All
United States, 2 minutes ago
Bologna, 11 minutes ago
United Kingdom, 15 minutes ago
Germany, 19 minutes ago
Norway, 21 minutes ago
Germany, Mannheim, UMM, 22 minutes ago
Sweden, 22 minutes ago
Recent Awards • All
Popular Question to Atefeh • 0
Popular Question to RelativeOptics ▴ 40
Great Question to Sam • 0
Popular Question to manikin_python9f ▴ 20
Popular Question to shevch2009 ▴ 20
Scholar to Tm ★ 1.1k
Popular Question to Panos ★ 1.8k
Recent Replies
Comment: How to Identify Conserved 21-mers Across TE Insertions in Drosophila? by manikin_python9f ▴ 20
Since they are transposons, we don’t know the exact location of them. We know their sequence of insertions from repeatmasker in dm6 genome.…
Comment: Tool 'sra_source' does not exist. by Atefeh • 0
Thanks for your kindness.
Comment: TCGA -derived Large RangeSummarizeExperient file by Tom • 0
It works well. Thank you very much ! @atpoint
Answer: TCGA -derived Large RangeSummarizeExperient file by ATpoint 89k
For the end user these `DFrames` are just regular data.frames, so you can do `col_data[,c("barcode", "patient", "whatever")]` or just do `a…
Comment: magpurify errors by shevch2009 ▴ 20
I have checked with my eyes, and I didn't find it, I have only one contig that starts with k127_458 .... but the name is different - k127_4…
Comment: Yeast reference-based genome assembly by Michael 56k
So, you aren't sure about the exact species? Then you might want to be careful with reference-based assembly in general. I recommend the fo…
Comment: Structural Variant identification on pangenome graphs by Panos ★ 1.8k
That's a very comprehensive list! Thanks for sharing! `minigraph` better suits my needs because all I need is SVs for my genomes. As far a…
Comment: Yeast reference-based genome assembly by amy967107 • 0
I have ~2.01 Gb of ONT data and the target genome is ~20–23 Mb (90–100× coverage). My ONT read N50 is ~3.8 kb, so contiguity may be limited…
Comment: Yeast reference-based genome assembly by amy967107 • 0
This is a yeast strain (probably Rhodotorula spp.) and I'm trying to assemble the entire genome from nanopore reads using a reference-based…
Answer: Yeast reference-based genome assembly by Michael 56k
The new [hifiassm ONT][1] may be all you need for getting a good assembly. I would not recommend LRSDAY, except for its annotation part (wh…
Comment: magpurify errors by Mensur Dlakic ★ 30k
By the way, these errors are not unique. If you look through the `magpurify` GitHub issues, both types have been reported already. - https…
Comment: magpurify errors by Mensur Dlakic ★ 30k
There is absolutely no chance that a contig labeled `k127_4584534` doesn't exist in your fasta files. These names are not made up out of th…
Comment: magpurify errors by shevch2009 ▴ 20
Strange but there are no such headers or contig names in my fasta files
Comment: replace gene names in gff file by Juke34 9.3k
Yes the --prefix Option exists. There is no count per chromosome. You can do it by splitting your input and analyse one sequence at a time…
Comment: Variant analysis for mouse WES by GenoMax 153k
You could open a new issue and ask the developers of `maftools` if this was something they can add.
Traffic: 4867 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6