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122,232 results • Page
18 of 2445
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Job:
Biomedical Data Scientist / Systems Biologist / Omics Data Analyst / Bioinformatician / Computational Biologist (Tulane University, New Orleans, LA)
TUPulm
5 months ago by
yzhou40
• 0
0
votes
0
replies
559
views
Batch effect in codominant microsatellite data – how to correct
population-genetics
batch-effect
R
microsatellite
genotyping
5 months ago by
shervin
• 0
2
votes
3
replies
888
views
UCSC genome browser negative strand positions
Genomic
Data
Browser
UCSC
Visualization
Genome
updated 5 months ago by
Maximilian Haeussler
★ 1.8k • written 5 months ago by
ijarne
▴ 20
0
votes
1
reply
574
views
Error when computing bedtools bamtobed -bedpe
human
bedtools
libraries
illumina
bamtobed
updated 5 months ago by
ATpoint
90k • written 5 months ago by
María José
▴ 10
1
vote
9
replies
1.5k
views
Ligand-Receptor analysis using LIANA - question about specificity
scRNA-seq
communication
cell-cell
updated 5 months ago by
Muhammad
▴ 20 • written 5 months ago by
abedkurdi10
▴ 190
2
votes
4
replies
1.7k
views
PRS calculation from two sample genotype results
prs
calculation
updated 5 months ago by
Muhammad
▴ 20 • written 11 months ago by
Arun
• 0
1
vote
16
replies
7.5k
views
PRS in UK Biobank - no covariate file and no phenotype file
UK
Biobank
PRS
4.2 years ago by
Jalil Sharif
▴ 80
40
votes
14
replies
4.4k
views
13 follow
Forum:
How do you estimate time to complete a project or task?
career
ngs
written 10 months ago by
sviatoslav.kendall
▴ 990
0
votes
0
replies
868
views
News:
Introduction to Deep Learning for Biologists - online course, 3–7 November
MachineLearning
Python
deepLearning
ConvolutionalNeuralNetwork
5 months ago by
Physalia-courses
★ 2.7k
1
vote
2
replies
1.1k
views
Running trajectory and velocity analysis with multiple samples
seurat
velocity
loom
trajectory
written 20 months ago by
gogeni5529
▴ 90
0
votes
1
reply
500
views
NMR modelling using xplor-NIH
peptide
xplor-NIH
NMR
5 months ago by
npk107
• 0
2
votes
5
replies
1.0k
views
PCA interpretation
chip
seq
PCA
updated 4 months ago by
ATpoint
90k • written 5 months ago by
Irving
• 0
0
votes
0
replies
800
views
News:
course: Reproducibility in Bioinformatics - Only 2 seats remain!
Singularity
Git
Reproducibility
Docker
Snakemake
5 months ago by
Physalia-courses
★ 2.7k
0
votes
0
replies
439
views
Annotate phylogenetic trees with bars or strips
otu
phylogenetics
R
taxonomy
metabarcoding
5 months ago by
Luca Arbore
▴ 10
3
votes
2
replies
723
views
Identifying Long Reads Spanning Chromosomal Breakpoints
ONT
samtools
Whole-Genome
updated 5 months ago by
trausch
★ 2.0k • written 5 months ago by
Noah
▴ 30
0
votes
2
replies
577
views
PAML output
PAML
Codeml
Selection
updated 4 months ago by
cfos4698
★ 1.2k • written 5 months ago by
Morjina
• 0
1
vote
2
replies
760
views
how to produce your own Nx plot
R
contiguity
plot
Nx
4 months ago by
Matteo Ungaro
▴ 140
1
vote
2
replies
686
views
Interpreting inconsistency between BLAST hits and phylogenetic clustering i
tree
phylogenetic
blast
5 months ago by
triplee0305
▴ 20
0
votes
0
replies
462
views
News:
Online course - Environmental Metagenomics - 13-17 October
Illumina
MAGs
Nanopore
Metagenomics
5 months ago by
Physalia-courses
★ 2.7k
0
votes
2
replies
591
views
Deg Difference in Deseq2
Deg
updated 5 months ago by
swbarnes2
15k • written 5 months ago by
j.k.owaresat
• 0
0
votes
0
replies
464
views
No gene_trans_map file in CD-HIT-EST output
cd-hit-est
Trinity
RNAseq
Trinotate
updated 5 months ago by
GenoMax
154k • written 5 months ago by
Olivia
• 0
0
votes
3
replies
766
views
MultiQC report - unique reads from sequence counts
fastQC
unique
reads
multiQC
5 months ago by
Rozita
▴ 40
2
votes
3
replies
699
views
NCBI Reference Genomes
genomes
ncbi
updated 5 months ago by
GenoMax
154k • written 5 months ago by
anna
▴ 70
0
votes
0
replies
471
views
GATK HaplotypeCaller missed variants in amplicon gene panel data
amplicon
gene_panel
haplotypecaller
variant_calling
gatk
5 months ago by
Sofya
• 0
0
votes
3
replies
1.0k
views
Missing gem_classification.csv in Cell Ranger 9.0.0 Output Using cellranger multi with Combined Human-Mouse Reference
gem_classification
10x
cellranger_multi
combined_human-mouse_reference
updated 4 months ago by
GenoMax
154k • written 5 months ago by
tlallihuacan
• 0
0
votes
1
reply
618
views
Statistical analysis in a metagenomics study to validate biological differences
Metagenomics
analysis
updated 5 months ago by
chen
★ 2.5k • written 5 months ago by
Chijioke
• 0
1
vote
2
replies
828
views
Assembly issues
adapters
Assembly
Spades
updated 5 months ago by
chen
★ 2.5k • written 6 months ago by
anna
• 0
0
votes
5
replies
1.1k
views
Trouble removing adapters from sequences using cutadapt
removal
cutadapt
adapter
primer
updated 5 months ago by
chen
★ 2.5k • written 5 months ago by
k.lagan
• 0
0
votes
5
replies
2.4k
views
Fastp
fastp
updated 5 months ago by
chen
★ 2.5k • written 3.6 years ago by
nishimalhotra2612
▴ 50
5
votes
10
replies
1.5k
views
Need help using ExpansionHunter
ExpansionHunter
5 months ago by
brianhill_nc
• 0
0
votes
0
replies
438
views
Comparing and plotting multinomial elastic net performance
ROC
elasticnet
plotting
glmnet
machinelearning
5 months ago by
bioinfo
• 0
4
votes
3
replies
820
views
How to add gene lable on GSEA plot
gseaplot
R
updated 5 months ago by
yura.grabovska
▴ 890 • written 5 months ago by
Emy Alade
▴ 40
0
votes
0
replies
382
views
Adding New Samples to Existing VCF Files graphtyper2
graphtyper2
existing_vcf
add_new_samples
5 months ago by
upadhyay.maulik
• 0
2
votes
5
replies
882
views
Seurat dims and QC questions
dims
updated 5 months ago by
1769mkc
★ 1.3k • written 5 months ago by
reddyornah
• 0
1
vote
1
reply
637
views
Duplication rate as reported by fastp.
fastp
duplication
RNA-seq
updated 5 months ago by
GenoMax
154k • written 5 months ago by
Anjan
▴ 850
0
votes
2
replies
972
views
Is it appropriate to include singleton reads with paired-end datasets for low-coverage Anaplasma marginale comparative genome analysis?
assembly
analysis
coverage
genome
singletons
comparative
updated 5 months ago by
Mensur Dlakic
★ 30k • written 5 months ago by
ashiqullah024
• 0
0
votes
1
reply
710
views
ComBat for Multiple Batch Effects in Methylation Data (Chip, Row, Plate)
ComBat
methylation
EPIC
batch-correction
updated 5 months ago by
Basti
★ 2.1k • written 5 months ago by
Eliveri
▴ 350
0
votes
1
reply
515
views
Using a Seurat object to create a cellchat object
cellchat
5 months ago by
m.sharghi
• 0
0
votes
0
replies
435
views
WGCNA - High R2 and Mean connectivity at low soft power
WGCNA
5 months ago by
Leonard Barnabas
• 0
0
votes
0
replies
561
views
How do I combine or integrate my VDJ data for TCR and BCR with seurat object?
VDJ
scRepertoire
Seurat
updated 5 months ago by
GenoMax
154k • written 5 months ago by
Jaber
▴ 30
0
votes
4
replies
2.3k
views
DGE analysis in Seurat using paired samples per donor ?
paired
seurat
dge
sample
4 months ago by
Picasa
▴ 700
2
votes
3
replies
993
views
RNA-seq: TPM batch effect correction
TPM
Combat
RNA-seq
updated 5 months ago by
rfran010
★ 1.7k • written 5 months ago by
Samuel
▴ 10
1
vote
3
replies
712
views
Error running pbrun fq2bam: No space left on device
disk
space
updated 5 months ago by
DBScan
▴ 530 • written 5 months ago by
Ritu
• 0
2
votes
3
replies
2.1k
views
How to find the annotation file for GPL16956 platform of Arraystar human lncRNA microarray V3 (Probe Name Version)?
annotation
lncRNA
microarray
probe
updated 5 months ago by
GenoMax
154k • written 5.5 years ago by
daphneolivia39
▴ 20
1
vote
5
replies
850
views
Statistics for bins
data
shotgun
updated 5 months ago by
GenoMax
154k • written 5 months ago by
shevch2009
▴ 20
5
votes
4
replies
837
views
twist exome panel analysis
twist
exome
updated 5 months ago by
GenoMax
154k • written 5 months ago by
1769mkc
★ 1.3k
0
votes
1
reply
461
views
Run hifiasm without error correction module?
hifiasm
assembly
wgs
nanopore
genomics
updated 5 months ago by
shelkmike
★ 1.8k • written 5 months ago by
Mark
▴ 60
1
vote
1
reply
464
views
PhageTerm Galaxy
error
phageterm
genomics
updated 5 months ago by
GenoMax
154k • written 5 months ago by
NIkita
• 0
1
vote
1
reply
491
views
Demultiplexing of snAtcSeq data using demuxlet gives an empty output
genotype
demuxlet
scatacseq
demultiplexing
updated 5 months ago by
GenoMax
154k • written 5 months ago by
Bioiris
▴ 10
0
votes
1
reply
689
views
PbJelly Resume
Gap-filling
PacBio
PbJelly
written 18 months ago by
Lissa Cruz Saavedra
• 0
122,232 results • Page
18 of 2445
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Comment: "sortmerna" quitting early--is this is a memory issue?
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• 0
Ok, here's the output: https://pastebin.com/uEHSckHS This run had the working directory in the default location, in sortmerna\run, but it …
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Try to re run the command by first starting meeko and rdkit . to convert PDB files to PDQT files. It can help vina recognize the atom . a…
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Do you mean the maximum % RAM usage it reaches right before the moment it quits? As I said, the computer has 16 GB RAM, and the run fails w…
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Thank you very much for always answering my doubts and questions. I truly value and appreciate it because it helps me understand the result…
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Many thanks !
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> I have access to both the raw reads and the previously assembled transcriptome submitted to TSA. and > I am trying to determine wheth…
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There are a few factors to consider: **The quality of the existing reference.** If there is a high quality chromosome level assembly,…
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Pls add the output and your system (especially RAM), no one here can guess.
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There are software packages for power analysis such as https://academic.oup.com/bioinformaticsadvances/article/5/1/vbaf150/8173951.
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3.5k
Run QC for each sample separately, then merge run SCTransform, PCA, then Harmony, UMAP, FindNeighbors and FindClusters.
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Thank you for the quick answer. I still have a doubt. It would be better to pre-process each sample separately (*filtering, SCTransform…
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I checked the memory before executing this command. I made a bash script on Ubuntu to run it on 15 folders. But, this problem happened in f…
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Many proteins have multiple domains, and are correctly classified with multiple KO numbers. That's not a bug in `kofam_scan` but rather a r…
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If you want to visualise the mapping; take a look at using IGV. It just requires the genome you used to map the reads and the BAM output (n…
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Thanks, I had completely forgotten that METABOLIC works with protein sequences. That will work :) I was just trying to figure out how peop…
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