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121,910 results • Page 49 of 2439
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miRNA analysis
miRNA vescicles extracellular
9 months ago by deniselavezzari • 0
3
votes
1
reply
651
views
tRNA nomenclature / numbering conventions
tRNA RNAseq
updated 9 months ago by ★ 2.0k • written 9 months ago by ▴ 650
0
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2
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687
views
Where can I get gtf file for Adenovirus 5?
gtf files virus
9 months ago by new ▴ 10
5
votes
6
replies
2.0k
views
Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
10X scRNA-seq stranded
updated 3 months ago by ★ 7.7k • written 9 months ago by ▴ 310
1
vote
2
replies
635
views
The quality of the linear reference genome used for constructing a pan-genome
cactus-minigraph
9 months ago by chiyong4783 • 0
1
vote
2
replies
970
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HLA alignment, approximation and frequencies
Fastq
9 months ago by oumo • 0
0
votes
6
replies
1.9k
views
Convert RNASeq V2 data in cBioPortal having RSEM normalized results to TPM values
TPM RNA-Seq cbioportal RSEM
updated 6 weeks ago by • 0 • written 24 months ago by • 0
0
votes
0
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361
views
Mutational Signatures, General Standard Refit, Cosine similarity
Standard Refit selected in signatures
9 months ago by shakyaram079 • 0
4
votes
1
reply
1.1k
views
Dorado for m6A modification detection
dorado m6A nanopore
updated 9 months ago by 153k • written 9 months ago by ▴ 60
1
vote
17
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3.0k
views
7 follow
The BUSCO assessment of the MAKER annotation results shows a low completeness
BUSCO MAKER
updated 9 months ago by 56k • written 10 months ago by • 0
0
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2
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743
views
Create custom references for Macaca fascicularis using Cellranger -arc
fascicularis references Cellranger Macaca custom -arc
9 months ago by tranhangk15cnsh • 0
1
vote
4
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1.2k
views
vg mod changes a graph, but what about a gam or gamp to the original graph?
vg
updated 9 months ago by ▴ 760 • written 9 months ago by ▴ 10
0
votes
3
replies
959
views
Getting an Expression Matrix from GDC Manifest File
RNAseq
updated 9 months ago by ★ 1.3k • written 10 months ago by ▴ 110
0
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5
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1.8k
views
Scale-free topology fit index WGCNA
unsigned signed WGCNA
updated 9 months ago by 3.9k • written 9 months ago by • 0
0
votes
2
replies
733
views
RNA seq analysis in R
R pca heatmap
updated 9 months ago by ★ 19k • written 9 months ago by ▴ 140
3
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0
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21k
views
Herald: The Biostar Herald for Thursday, December 05, 2024
herald
9 months ago by Biostar 3.6k
0
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0
replies
344
views
How to get the differential abundant taxa of the first time point in time series analysis
LRT
9 months ago by leranwangcs ▴ 150
0
votes
2
replies
755
views
Sequence duplication in fastqc
fastqc duplication RNASeq
9 months ago by rajdeepboral00 ▴ 70
5
votes
6
replies
1.5k
views
Forum: How do I start my journey as bioinformatics?
Student Education Career Bioinformatics Programming
updated 9 months ago by ★ 19k • written 9 months ago by • 0
0
votes
1
reply
568
views
Mice DEGs for SBGNview plot
SBGNview RNA-seq DEGs mice
updated 8 months ago by ▴ 110 • written 9 months ago by ▴ 40
1
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4
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3.0k
views
Motif Scanning: HOMER vs MEME, settings?
homer fimo
updated 9 months ago by 5.1k • written 18 months ago by • 0
12
votes
9
replies
1.9k
views
7 follow
Best Approach to Identify Human-C. elegans Orthologs?
c.elegans Orthologs Homologs Genomics
9 months ago by bioinformatics_rk ▴ 10
3
votes
3
replies
705
views
How to retain interactive plots from Glimma in R Markdown HTML Document
R glimma markdown
updated 9 months ago by ▴ 820 • written 9 months ago by ▴ 10
4
votes
11
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1.9k
views
Counts after using feature counts is low
hisat2 featureCounts lowcounts
updated 9 months ago by 153k • written 9 months ago by ▴ 70
4
votes
6
replies
1.1k
views
PCA interpretation
RNASeq PCA
updated 9 months ago by ▴ 130 • written 9 months ago by ▴ 20
1
vote
3
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712
views
samtools reheader error
samtools
updated 9 months ago by ▴ 390 • written 9 months ago by • 0
0
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0
replies
1.1k
views
Job: Postdoctoral Research Associate
postdoc
9 months ago by Ta-Chiang • 0
2
votes
2
replies
798
views
Paired End Data Merging: Before Or After ?
Workflow Merging Paired Metagenomics Fastq
9 months ago by Aytaç • 0
0
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0
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328
views
Small Molecule Databases and clustering
polyethylene MolecularDatabase Molecule PET trephthalate
9 months ago by yarrowmadrona ▴ 10
0
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3
replies
1.1k
views
Computational tools for predicting novel substrates for a class of enzymes
substrate catalysis enzyme
updated 9 months ago by ▴ 60 • written 10 months ago by ▴ 10
3
votes
2
replies
1.0k
views
biomart hangs
biomaRt
updated 9 months ago by ★ 1.7k • written 9 months ago by ▴ 60
1
vote
2
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610
views
abra2 error java.lang.NumberFormatException
abra2 pangenome java
9 months ago by chiyong4783 • 0
2
votes
4
replies
892
views
Convert ensembl ids to gene names
R mus musculus
9 months ago by anasjamshed ▴ 140
2
votes
1
reply
466
views
gene annotation of an eukaryotic organism
Gene annotation
updated 9 months ago by ▴ 280 • written 9 months ago by • 0
0
votes
3
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784
views
contrast matrix design for a continuous variable at multiple groups
design contrast limma
updated 7 months ago by 10k • written 9 months ago by ▴ 10
0
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2
replies
589
views
Genome comperison showing unaligned sequence of 70kb in synteny
assembly fungi synteny comperison genome
9 months ago by SomeOne ▴ 240
0
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4
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1.3k
views
RNA-seq to look at the Effect of Viral Infection
virus DESeq2 differential-gene-expression
updated 9 months ago by 15k • written 10 months ago by • 0
2
votes
0
replies
496
views
Tool: ENA-data brokers, I think you need this...
repository ENA broker submission
9 months ago by Michael 56k
1
vote
3
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853
views
Quantification of RNAseq data
Illumina RNAseq
updated 9 months ago by 103k • written 9 months ago by • 0
0
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3
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1.9k
views
Ensembl vep GRCh38 cache version
vep cache ensembl gatk
9 months ago by sg197 ▴ 40
5
votes
3
replies
1.1k
views
Merging VCF files from different populations
SNPs alleles GBS merging vcf
8 months ago by Armin ▴ 10
0
votes
0
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263
views
Newbie question on how to use multi2di
multifurcating tree phylogenetic multi2di
9 months ago by Stavros • 0
0
votes
1
reply
631
views
How to control for UV mutational signature? (for recurrent somatic mutation)
UV somatic-signature melanoma
updated 9 months ago by • 0 • written 23 months ago by ▴ 60
0
votes
1
reply
541
views
Blog: Novogene Single-cell and Spatial Multi-omics Case Study -Hematological Oncology Research and Application
Multi-omics Single-cell
updated 9 months ago by ▴ 130 • written 9 months ago by ▴ 510
4
votes
5
replies
1.1k
views
Parameter Settings for Haplotype-Aware Aligner
vg
updated 9 months ago by 153k • written 9 months ago by • 0
0
votes
1
reply
562
views
Retrieve MeSH Unique ID (CUI) from Entrez eFetch
MeSH Entrez NCBI
updated 9 months ago by 153k • written 9 months ago by • 0
0
votes
0
replies
768
views
problem with reading cel files from [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20stv1_Hs_ENTREZG_17.0.0]
normalization microarray
updated 9 months ago by 153k • written 9 months ago by • 0
2
votes
4
replies
1.2k
views
How does Salmon handle multimapped reads?
rnaseq multimapping nf-core salmon
updated 9 months ago by 153k • written 9 months ago by • 0
1
vote
1
reply
1.0k
views
How to determine intra-run and inter-run repeatability in statistically sound manner?
Validation
updated 9 months ago by 5.1k • written 9 months ago by 4.2k
4
votes
0
replies
477
views
Tool: Introducing Amplicon: AI Nextflow Pipeline Generator
nextflow pipeline ai workflow
9 months ago by Semir ▴ 60
121,910 results • Page 49 of 2439
Recent Votes
GSEA vs GO enrichment
Blastn and Kraken2 short reads clssification
Live Online course: Bioinformatic tools for transcriptomic data, Oct 2025
Tried building a compact sequence format with 4-bit storage
Comment: Tried building a compact sequence format with 4-bit storage
Answer: Tried building a compact sequence format with 4-bit storage
Tried building a compact sequence format with 4-bit storage
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Answer: Trouble when installing arb by SilentGene ▴ 120
I've got the same error when installing from `arb-6.0.6-source.tgz` and `arb-7.0-source.tgz`. Anyone has any solution?
Comment: Hifiasm is getting killed while trying to assemble a genome by pranavdatar01 • 0
Yes, I did check for adaptor contamination, and did not find any. I have kept all the reads with quality score of more than 30.
Comment: Hifiasm is getting killed while trying to assemble a genome by Panos ★ 1.8k
No overlapping reads? Have you checked for contamination?
Comment: Tried building a compact sequence format with 4-bit storage by Pranava ▴ 10
I see, but the reason I was planning on using a 4bit system is so that there wouldn't be too much data loss but thank you for the suggesti…
Comment: Splice junctions plots for long-read seq data by alison.ludzki • 0
Thank you! I will check out miso!
Comment: Hifiasm is getting killed while trying to assemble a genome by pranavdatar01 • 0
I did subsample the data to 30x coverage. I did run hifiasm on it, the log file did show some contents, but hifiasm ended again, stating th…
Comment: Tried building a compact sequence format with 4-bit storage by Alex Reynolds 36k
Using four bits for storage won't beat 2bit, of course, but direct access to a sequence of interest sounds interesting and useful and might…
Comment: Hifiasm is getting killed while trying to assemble a genome by Panos ★ 1.8k
Why don't you subsample your HiFi reads and try running hifiasm again? Maybe this will help if you have memory problems. However, I haven't…
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
RNA-seq is very good at relative analyes. It would be straightforward to determine which miRNAs are relatively more abundant, compared to o…
Comment: Tried building a compact sequence format with 4-bit storage by Pranava ▴ 10
Woah!!! Thank you very much, Matthias. I honestly didn't even know some of those existed and I will definitely go through them and try to u…
Answer: Tried building a compact sequence format with 4-bit storage by Matthias Zepper 5.1k
Hello Pranava, Thanks for sharing your repository. Devising a new file format is an interesting undertaking and certainly a task with many…
Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest by piffelpaff • 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads by YuZJ • 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
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