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1
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2
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441
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Nextflow crash on AWS Batch with transition error
BWA Nextflow AWS
updated 3 months ago by ★ 2.2k • written 3 months ago by ▴ 180
0
votes
0
replies
819
views
Comment: Comment: CNV-calling single sample
4 months ago by hkarakurt ▴ 180
0
votes
1
reply
507
views
Comment: Comment: Transcript Based Annotation of Variants Using Annovar
5 months ago by hkarakurt ▴ 180
3
votes
4
replies
507
views
Transcript Based Annotation of Variants Using Annovar
Annovar SNV Transcript Variant
updated 5 months ago by ★ 2.7k • written 5 months ago by ▴ 180
0
votes
0
replies
693
views
Comment: Comment: 4 Fastq files for a single run generated by 10X
6 months ago by hkarakurt ▴ 180
2
votes
2
replies
693
views
4 Fastq files for a single run generated by 10X
scRNA-Seq Fastq SRA 10X
6 months ago by hkarakurt ▴ 180
0
votes
2
replies
468
views
Finding the Sequence of a Protein with Variant
WES Variant-Annotation WGS
updated 10 months ago by 44k • written 10 months ago by ▴ 180
4
votes
6
replies
1.5k
views
Using Specific Regions of Genome as Reference for Alignment Using STAR
RNA-Seq Alignment STAR
updated 19 months ago by ★ 2.4k • written 19 months ago by ▴ 180
0
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0
replies
1.5k
views
Comment: Comment: Using Specific Regions of Genome as Reference for Alignment Using STAR
19 months ago by hkarakurt ▴ 180
2
votes
2
replies
986
views
Weighted gene regulatory networks
regulatory ChIP-Seq network
updated 20 months ago by ▴ 470 • written 4.0 years ago by ▴ 180
2
votes
1
reply
509
views
A method to find if a variant is Genomic or an RNA-Editing variant
Editing RNA-Seq WES RNA Variant
updated 22 months ago by 19k • written 22 months ago by ▴ 180
0
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0
replies
676
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Inserting Junctions Into Genome after Indexing with STAR
splicing alternative Junctions STAR RNA-Seq
2.0 years ago by hkarakurt ▴ 180
0
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0
replies
1.9k
views
Comment: Comment: Using DESeq2 as one sample vs. population
2.1 years ago by hkarakurt ▴ 180
0
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0
replies
1.9k
views
Comment: Comment: Using DESeq2 as one sample vs. population
2.1 years ago by hkarakurt ▴ 180
0
votes
1
reply
1.9k
views
Comment: Comment: Using DESeq2 as one sample vs. population
2.1 years ago by hkarakurt ▴ 180
0
votes
1
reply
1.9k
views
Comment: Comment: Using DESeq2 as one sample vs. population
2.1 years ago by hkarakurt ▴ 180
4
votes
8
replies
1.9k
views
Using DESeq2 as one sample vs. population
expression differential test DESeq2 RNA-Seq one-sample
2.1 years ago by hkarakurt ▴ 180
0
votes
0
replies
673
views
Comment: Comment: Formula for Differential Expression Analysis of 2 conditions and 2 cell types
2.2 years ago by hkarakurt ▴ 180
5
votes
2
replies
673
views
Formula for Differential Expression Analysis of 2 conditions and 2 cell types
Differential edgeR Expression Formula RNA-Seq
2.2 years ago by hkarakurt ▴ 180
0
votes
0
replies
442
views
Prediction Tool for Pathogenicity of Alternatively Spliced Proteins
protein mRNA RNA-Seq splicing
2.4 years ago by hkarakurt ▴ 180
0
votes
0
replies
2.5k
views
Comment: Comment: Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
2.7 years ago by hkarakurt ▴ 180
8
votes
5
replies
2.5k
views
Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
Variant Calling SNP MinION ONT
2.7 years ago by hkarakurt ▴ 180
0
votes
0
replies
2.5k
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Comment: Comment: Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
2.7 years ago by hkarakurt ▴ 180
2
votes
1
reply
3.2k
views
MinION Data Examples (FAST5) Database
ONT FAST5 MinION DNA
updated 2.9 years ago by 143k • written 2.9 years ago by ▴ 180
3
votes
1
reply
2.7k
views
Normalization and Batch Effect of bulk RNA-Seq
batch RNA-Seq correction normalization
updated 2.9 years ago by 14k • written 3.0 years ago by ▴ 180
0
votes
1
reply
963
views
Multiple Transctipr ID (NM ) from MyVariantInfo
snp transcript dna-seq
updated 3.2 years ago by ▴ 660 • written 3.2 years ago by ▴ 180
1
vote
1
reply
685
views
Genomic Variant calling from RNA-Seq Data
RNA-Seq SNP Genomic Variant
updated 3.3 years ago by 88k • written 3.3 years ago by ▴ 180
30
votes
15
replies
21k
views
8 follow
Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
RNA-Seq R Seurat Monocle Pseudotime
updated 3.4 years ago by ▴ 120 • written 5.0 years ago by ▴ 180
0
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1
reply
1.0k
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Comment: C: Optimal Number of SNPs in NA12878 WES Data
3.5 years ago by hkarakurt ▴ 180
0
votes
3
replies
1.0k
views
Optimal Number of SNPs in NA12878 WES Data
WES GATK SNP
3.5 years ago by hkarakurt ▴ 180
4
votes
3
replies
1.8k
views
Calculating GC content around a specific genomic location
WGS WES GC genome SNP
updated 3.5 years ago by 4.0k • written 3.5 years ago by ▴ 180
0
votes
0
replies
750
views
Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
RNA-Seq scRNA-Seq batch-effect
updated 8 weeks ago by 44k • written 3.6 years ago by ▴ 180
2
votes
1
reply
1.1k
views
Trimmomatic trims most of the reverse strand
fastq trim trimmomatic bwa
updated 3.7 years ago by 143k • written 3.7 years ago by ▴ 180
0
votes
0
replies
1.1k
views
Comment: C: SNPs on a single transcript of a gene with multiple transcripts
3.8 years ago by hkarakurt ▴ 180
3
votes
3
replies
1.1k
views
SNPs on a single transcript of a gene with multiple transcripts
WGS WES SNP Gene
updated 3.9 years ago by ★ 1.9k • written 3.9 years ago by ▴ 180
0
votes
1
reply
1.1k
views
Comment: C: Network Analysis of Each Cluster of Protein Interaction Network
3.9 years ago by hkarakurt ▴ 180
0
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0
replies
1.1k
views
Comment: C: Network Analysis of Each Cluster of Protein Interaction Network
3.9 years ago by hkarakurt ▴ 180
4
votes
5
replies
1.1k
views
Network Analysis of Each Cluster of Protein Interaction Network
R Python Network PPI
updated 3.9 years ago by ▴ 520 • written 3.9 years ago by ▴ 180
0
votes
0
replies
2.9k
views
Comment: C: Differential Expression Analysis of Two Groups Time Series Data with Limma
4.7 years ago by hkarakurt ▴ 180
1
vote
2
replies
2.9k
views
Differential Expression Analysis of Two Groups Time Series Data with Limma
limma microarray differential expression RNA-Seq
4.7 years ago by hkarakurt ▴ 180
0
votes
1
reply
4.2k
views
Comment: C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
4.7 years ago by hkarakurt ▴ 180
0
votes
1
reply
4.2k
views
Comment: C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
4.7 years ago by hkarakurt ▴ 180
0
votes
1
reply
4.2k
views
Comment: C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
4.7 years ago by hkarakurt ▴ 180
3
votes
8
replies
4.2k
views
Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
fpkm scRNA-seq RNA-Seq tpm batch-effect
updated 8 weeks ago by 44k • written 4.7 years ago by ▴ 180
2
votes
1
reply
1.6k
views
Automatic Coloring for Each Node According to Names in Cytoscape
cytoscape network intercation
updated 4.9 years ago by ▴ 620 • written 5.0 years ago by ▴ 180
0
votes
1
reply
21k
views
Comment: C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
5.0 years ago by hkarakurt ▴ 180
0
votes
0
replies
21k
views
Comment: C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
5.0 years ago by hkarakurt ▴ 180
0
votes
1
reply
21k
views
Comment: C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
5.0 years ago by hkarakurt ▴ 180
0
votes
0
replies
2.1k
views
Comment: C: Dunn Index for Clusters from scRNA-Seq
5.3 years ago by hkarakurt ▴ 180
0
votes
1
reply
2.1k
views
Comment: C: Dunn Index for Clusters from scRNA-Seq
5.3 years ago by hkarakurt ▴ 180
91 results • Page 1 of 2
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