Biostar

8,689 results • Page 1 of 174

Hello to everyone I am searching for a new laptop as I am starting to getting deeper into bioinformatics. The budget is around 1000 dollars. Also is there any reason to...search for laptops with dedicated gpu instead of integrated graphics as demanding graphics aren't needed for bioinformatics. Thanks

hardware Laptops

updated 17 months ago • tsomakiank

Hello everyone, I am planning to buy a new laptop to work in bioinformatics, I have intermediate knowledge in bioinformatics. Do we have to buy a mac to work in bioinformatics...or is it okay to work on other laptops with good specifications. What kind of specs are usually required to work in bioinformatics efficiently? Thanks

hardware NGS

updated 17 months ago • ashwing.kofficial

In the market for a new laptop, wondering if anyone had suggestions for reasonably priced laptops that can handle multiple bioinformatics softwares

suggestion software tech

updated 6.5 years ago • mollie.passacantando

Hello everyone, It appears that I won't be able to use a Mac laptop for my analysis at my new workplace. They don't have a Linux-based server available, so I will need to set up everything...Hello everyone, It appears that I won't be able to use a Mac laptop for my analysis at my new workplace. They don't have a Linux-based server available, so I will need to set up everything for my analysis o…

Windows mac

updated 10 months ago • SHN

Hi All I need some advices and suggestions in choosing a machine for regular bioinformatics and some advanced modeling works and mostly deal with sequence and data analysis. I am in dilemma in choosing...model and select configuration. Which one will be better A laptop with 8gb ram and 128gb SSD or A laptop with 16gb ram and 500gb HDD. I heard SSD is better option even though it is bit cost…

suggestion

updated 6.6 years ago • ThulasiS

Hi everyone, I'm in need of a new laptop. Could anyone please recommend some important specs that I should look out for when choosing one. I do have access to

laptop hardware

updated 4.3 years ago • emily.amor.stander

like to be able to run most any of the typical ChIP-seq and RNA-seq tools (e.g. MACS2) from a home laptop computer; in other words, without access to HPC. I will be working with data from the relatively small eukaryotic genome...lt;5,400 genes across 14 chromosomes). Q1: Is there a preference for Mac (e.g. Macbook Pro) vs a PC laptop? Q2: What processor, memory and storage should I be looking a…

laptop

updated 2.6 years ago • mfeather

Hi, Would want to buy a laptop under 600 Euros 700 Dollars, that would be somewhat futureproof. Will be doing some alignment work and multiplex amplicon...be possible. Any info about this, if I could upgrade to 32 GB that would be a reason to buy the Laptop, otherwise hearing that 32 GB or at least that possibility would "futureproof" the laptop has got me thinking. ANYONE

alignment

updated 4.7 years ago • davehor

Hello, Biostars! I'm new here and I'm really interested in pursuing bioinformatics. I'm currently a first-year MSc student working in a project involving genomics. The actual computer work...manage. My undergrad is a classic, broad BSc in Biology so I have practically zero experience doing bioinformatics, save for a molecular phylogenetics exercise we did in my elementary genetics course. So my…

hardware next-gen

updated 19 months ago • Angelo Victoria

Hello, Bioinformaticians! I'm new here and I'm really interested in pursuing bioinformatics. I'm currently a first-year MSc student. The actual computer work will be concentrated next year so I have some...My undergrad is a classic, broad BSc in Biochemistry so I have practically zero experience doing bioinformatics. So my question is, how different is MacOS/Linux/Windows in the context of bioi…

computer hardware

updated 11 months ago • kstangline

Dear All, I have little experience with Bioinformatics. In the moment I do not have access to a HPC-Cluster which seems to be indispensable for big data analysis. Do...small enough and yet instructive**, so as to be possible to perform the data analysis in the own laptop. I have a HP laptop with **7 CPU and 16 GB RAM**. In the best scenario the data set would come from a eucaryotic genome for…

RNA-Seq ChIP-Seq

updated 5.2 years ago • iibrams07

purchasing a computer for personal investment(for BI analysis), so I am also considering a laptop such as below. (The cost is under consideration at around $ 2,000 or less.) - Macbook Pro 13, M2, RAM 24GB - DELL Inspiron 16 DN5620...use due to compatibility issues compared to intel, and I would like to ask for advice on this. Which laptop is best to buy and use? And as considered above, as a per…

Microbiome

updated 15 months ago • yonghyun09

Dear one, Can't I use STAR in my laptop which has 4GB RAM? I want to align mouse RNA-Seq data! It is written that STAR requires 30GB of RAM for human genome! Thanks

star RNA-Seq

updated 6.3 years ago • John

analysis of the pedigree (which has a high degree of endogamy/consanguinity). Will a high-end laptop (e.g. msi GS65 i7, 16GB, NVIDIA GTX1070, 512GB SSD) work? I am making some progress with R on a simpler laptop but will have to

SNP R genome

updated 5.6 years ago • paul.watkins

Is it possible to run NGS analysis on a core i3 laptop only? If not, will it be advisable for me to buy a separate hard disk for the NGS analysis only to sort of compensate with

next-gen sequencing ngs alignment

updated 7.8 years ago • Darth Winter

Delegates Collaborator/Sponsor/ Exhibitor to the 12th International Conference on Advancements in Bioinformatics and Drug Discovery which is scheduled during November 26-27, 2018 Dublin, Ireland. This is a fabulous open...to communicate with the world class Scientists. Conference focuses on fore most topics such as: Bioinformatics | Drug Discovery | Epitranscriptomics | Computational biology &…

sequencing alignment RNA-Seq gene sequence

updated 11 months ago • bioinformatics

Hi Some could share publically available bioinformatics grant application links

next-gen RNA-Seq

updated 5.1 years ago • B- for bioinformatics

Recently I purchased biostar handbook and am trying to follow it. I have a basic question......my laptop configuration is as follows: memory 2GB, Intel core 2 Duo CPU T7250@2.00GH X 2, graphics intel 965GM, OS type 64 bit, Ubuntu

RNA-Seq ChIP-Seq

updated 7.0 years ago • s_bio

2018 would like to take this wonderful opportunity to welcome everyone interested in Bioinformatics to “12th International Conference on Advancements in Bioinformatics and Drug Discovery” that is scheduled...experts all over the world and intends in advancing the scientific discoveries. The Congress foci on Bioinformatics & Computational Biology & Metabolomics, Proteomics, Biomedi…

Assembly next-gen-sequencing

updated 11 months ago • bioinformatics

from my career as a bioinformatician. So to upgrade myself is much needed since I'm looking for a laptop to perform some RNA-seq, ChIP-seq analysis (not bulk data analysis) what would be the minimum specification required

chip-seq rna-seq ngs

updated 6 months ago • ashaneev07

2018 would like to take this wonderful opportunity to welcome everyone interested in Bioinformatics to "12th International Conference on Advancements in Bioinformatics and Drug Discovery" that is scheduled...all over the world and intends in advancing the scientific discoveries. The Congress foci on Bioinformatics & Computational Biology, Proteomics, Biomedical & Health Informat…

genome Computational-Biology

updated 11 months ago • bioinformatics

for calculation of codon usage indices. I sourced the program and tried to install in my laptop but it failed as the codonW installer is missing extension for installation. I am getting an error: ``` #Provisional failure

fasta codonW sequence-alignment

updated 17 months ago • makoye

Hello to everyone! I am considering starting a masters in bioinformatics next year. I also have to analyse some RNA-seq data for my current thesis study. I have minor knowledge in computer...Hello to everyone! I am considering starting a masters in bioinformatics next year. I also have to analyse some RNA-seq data for my current thesis study. I have minor knowledge in computer science, so I am wo…

hardware

updated 17 months ago • tsomakiank

One computer would be used by lab members to perform routine analyses that they cannot run on their laptops and for which the standard desktops that we have available can't do the job because of too low RAM or processing power...I'm not thinking about high end servers, rather something to serve as middle-ground between student laptops and weak lab desktops on one hand and servers and super-comput…

linux

updated 14 months ago • Eric Normandeau

Any one here using a laptop/server/cluster with a [Solid State Drive][1] for bioinformatics data processing ? A friend recommended to use them for

hardware

updated 5.7 years ago • Khader Shameer

Dear all, Would a laptop with the following specs be able to run RNA-seq provided the reference genome is available? - Graphic Cards: Single 8GB

RNA-Seq

updated 2.2 years ago • abdullahrenk

I was wondering if this laptop would be sufficient for small dataset/sequence analysis? My focus currently is mainly around cancer genomic datasets...do a little programming/code development, but it will not be intensive This will not be my primary laptop, and I don't intend to lug it around much, if at all. I am comfortable in the event it takes multiple days to process/run. **Specs

DeSEQ2 tcga Xena laptop

updated 2.8 years ago • BioinformaticsEnthusiast

it is possible, please suggest me some applications. I have both windows 7 and Linux Mint 14.7 on my laptop. If it is not possible, please tell me what can I do? [1]: http://www.ncbi.nlm.nih.gov/sra?term=SRP052616

RNA-Seq Assembly saffron

updated 7.9 years ago • utsafar

I work in a genomics team where we sometimes teach people from other labs how to run bioinfo command line tools in Linux. Almost all of them are **Windows users** and never experienced using Linux. We usually help them set up Linux in **dual boot** so that they can run the tools later on their own. We also use conda extensively to install bioinformatics tools. But, the problem is each of them ha…

Docker

updated 7 months ago • arriyaz.nstu

I'm setting up a new laptop and want to work on RNA-seq and other genomic datasets in R, Python, Perl and R. I've got a 1 TB SSD and have a few days before...ll be adding Linux Mint — there doesn't seem to be any overwhelming warnings against this distro for bioinformatics. This isn't asking for any guidance on how to partition, just the recommended sizes for a bioinformatics machine...is really…

hardware

updated 10.1 years ago • Louis

Bioinformatics may suck... but I am here to help! For many years, I have seen and helped people struggle with basic bioinformatic...PI is extremely pushy or etc... So this is a service for such people who are seeking out anonymized bioinformatic expertise for a small task and willing to pay small amounts out of their pocket in bitcoins to get the job done

software-error

updated 13 months ago • bioinformatics-help

Bioinformatics for Beginners ][1] Training in Bioinformatics for Beginners @NIH ----------------------------------- August 18-21, 2020 ------------------------------ Where? --------------------------------- National Institutes...Pike Building 60, Room 162 Bethesda, MD 20892, USA ----------------------------- **Background** Bioinformatics (Computational Biology) is a must skill requir…

NGS Biomedical Training Biomedical-Informatics

updated 11 months ago • AABI

I am just getting started learning the R language for bioinformatics. First I want to install R and R Studio on my laptop. I read somewhere that the installer package needs to be the...right one for my computer. How do I install the right installer? My laptop is 8GB RAM and Intel dual core i5 processor. I know this is a very basic question. Please advise

studio R

updated 12 months ago • Franklin

hi I am begginer in Bioinformatics and I have a laptop with OS Ubuntu. The question is: How can extract nucleotide frequency for position on aligned

sequencing frecuency of nucleotides clustal omega

updated 6.4 years ago • algas2006

Hi everyone, I am thinking about buying a new laptop for bioinformatics. The new Macbook Pro with M1 processor looks really powerful. But does anyone know if there is any...compatible issues for bioinformatic softwares with the Apple M1? Is there any potential issues? Thanks a lot

software error RNA-Seq R genome sequence

updated 3.2 years ago • 1215045934

value from genetic data. *We are open to all applications that have significant expertise in bioinformatics including current masters or doctoral students, postdocs and seasoned bioinformatics experts.* ## Job Description...Sequencing LLC is growing and we're seeking a **Director of Bioinformatics** and a **Senior Bioinformatics Developer** to join our team on either a contract or full-time bas…

NGS Open-Source Data-Analysis API

updated 23 months ago • Bioinformatics @ Sequencing LLC

Hi everyone, I'm a new phd student and struggling to analyse microarray data in R. If anyone could help it would be so appreciated. Thankyou!

differentially genes expressed microarray

updated 2.6 years ago • bioinformatics

Dear Sir/Madam, Can i use this configuration laptop for MD Simulation of ligand-receptor complex in GROMACS. The specifications are mentioned below: HP Envy 15- 11th Gen

GROMACS hardware requirements installation

updated 2.0 years ago • pkpraveen2006

Original source: http://madhadron.com/?p=263 A farewell to bioinformatics Published: March 26, 2012 Category: biology:nontechnical I’m leaving bioinformatics to go work at a software...lot more money. This seems like an opportune time to set forth my accumulated wisdom and thoughts on bioinformatics. My attitude towards the subject after all my work in it can probably be best summarized thus…

bioinformatics

updated 14 months ago • Martin A Hansen

Sorry for posting this question, which is not about bioinformatics. I am not a native english speaker and I am often confused about the difference between the words *bioinformatic...and *bioinformatics*. For instance when used like: "I have experience with many different bioinformatics tools". Should I write *bioinformatic...or *bioinformatics* in this sentence? And when should I use the differ…

spelling

updated 12 months ago • jon.brate

Hi, I'm trying to perform microarray differential expression analyses in R using this NCBI dataset: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159659. These are the commands I have used so far: library(GEOquery) library(limma) library(preprocessCore) options("download.file.method.GEOquery" = "wget") # obtain GE data -----------------------------------…

microarray

updated 17 months ago • bioinformatics

Hi, I'm trying to perform a microarray differential expression analysis using data downloaded from NCBI. These are the commands I've done: files = list.files("/user/GSM4837048_JX65.CEL.gz,GSM4837049_JX66.CEL.gz",full.names = TRUE) affy.data = ReadAffy(filenames = files) eset.mas5 = mas5(affy.data) However for the last command I get the error message: background correction: mas P…

differentially expressed genes microarray

updated 19 months ago • bioinformatics

Bioinformatics is a rapidly developing branch of biology and is highly interdisciplinary, using techniques and concepts...similarities in the genetic makeup of species as varied as sponges and humans. Some sophisticated bioinformatic tools allow for correlation studies between genes and diseases. This allows us to understand a mechanism...was thinking “wow! that’s amazing! we can do a lot of s…

biology bioinformatics chemistry

updated 5 months ago • 53 naveen kumar

I am looking for small, short and lightweight bioinformatics pipelines to use for demonstration purposes which can be easily run without downloading large amounts...something that I can bundle in with a large program as a basic placeholder to show that "generic bioinformatic pipeline is working". This would be something that meets criteria such as: - required input data is small, less...total ex…

workflow pipeline

updated 11 months ago • steve

Only 5 spots left!!! Hello all, The UMD Bioinformatics Core will be offering hands-on Bioinformatics training again this summer. This week long course is perfect...for those with little to no bioinformatics experience but whom have a need to learn next-generation data handling methods. The workshop, Bioinformatics...Bioinformatics Crash Course Where: U of Maryland - College Park When: June 8t…

next-gen RNA-Seq workshop assembly

updated 15 months ago • ianmisner17

An Introduction to bioinformatics with Dr. Steve Jones, Head, Bioinformatics, Genome Sciences Centre, BC Cancer Agency. https://www.youtube.com...An Introduction to bioinformatics with Dr. Steve Jones, Head, Bioinformatics, Genome Sciences Centre, BC Cancer Agency. https://www.youtube.com/watch?v=dJrpSvsFXFI A very brief high-level introduction to some background history related to…

bioinformatics

updated 14 months ago • Malachi Griffith

Performs software programming for applied clinical genomics team. - In collaboration with bioinformatics specialists, maintains and runs, software systems for bioinformatics processing of sequence data, including...flat files, APIs, or other types of services. - Develops robust, efficient and fault tolerant bioinformatics analysis pipelines using scripting languages within a Linux environment. …

Assembly sequence R genome gene

updated 11 months ago • vannim

Bioinformatic Analysis of Next Generation Sequencing Data][1] Training in Bioinformatic Analysis of Next Generation Sequencing...access to two screens is highly recommended for adequate learning experience. Examples include two laptops, one computer with two screens, one laptop and one tablet, etc. **Objectives** Participants will start with a general introduction

RNA-Seq Biomedical next-gen

updated 11 months ago • AABI

the wall. We should not need massive infrastructure, CPU farms, cloud computing, system admins to do bioinformatics. We could just use a laptop or even a phone. Biology is immensely complicated, cutting out the unnecessary complexities

kallisto computational-cost

updated 15 months ago • Istvan Albert

Hi, Can someone help me understand the quality control steps. Specifically, I want to know if it filtered the bad probes and what is considered a bad probe? Also I wanted to know what the purpose of the box plots and density plot is? and if you perform quality control after creating these plots. Thanks! library(GEOquery) library(limma) library(preprocessCore) …

updated 8 months ago • bioinformatics

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