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227 results • Page 4 of 5
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Job: Postdoc position in bioinformatics: gene regulatory network inference
gene-regulatory-network-inference
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 40
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votes
1
reply
1.3k
views
Job: Bioinformatics Scientist/Programmer, Clinical Cancer Genomics Laboratory at UCSF
next-gen-sequencing R snp RNA-Seq
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 20
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0
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588
views
Job: Cloud Software Developer/Full-stack Developer, School of Medicine, Stanford University, Stanford, CA, USA
developer python google-cloud javascript
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 20
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0
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705
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Job: Postdoctoral position | Computational genomics | UMass Amherst
computational-genomics
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 20
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0
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30
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normalize for sample size in single cell rna seq cluster frequencies data
scRNAseq seurat 10x
4 hours ago by chi.delta ▴ 40
0
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0
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627
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Job: Immediate postdoc positions available for PhDs with informatics, RNA, muscle, or pulmonary interest [Washington University @ St. Louis, Missouri, USA]
R python RNA-Seq pulmonary
updated 4 hours ago by 39k • written 3.4 years ago by • 0
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0
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460
views
News: precisionFDA and Georgetown-ICBI Brain Cancer Predictive Modeling Challenge Submission Reminder
genome
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 150
0
votes
1
reply
823
views
Error in MEGAHIT
Assembly next-gen metagenomic
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 10
0
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0
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570
views
News: Training in Molecular Modeling and Molecular Dynamics @NIH,February 18-21,2020
Structural-biology Modeling next-gen
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 130
0
votes
1
reply
755
views
differential expression of geodataset using limma (input files)
R gene
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 30
0
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3
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838
views
meta-analysis of geo dataset
R microarray gene
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 30
0
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0
replies
536
views
News: Ensembl reduced functionality - Monday 20th January
Service Ensembl
updated 4 hours ago by 39k • written 3.4 years ago by ★ 2.2k
0
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0
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663
views
Resources recommendations for cloud computing (AWS) beginners
cloud aws hpc
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 400
0
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0
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880
views
Job: Postdoctoral position in data omics, Laboratory of Translational Genetics, VIB-KU Leuven Center for Cancer Biology, Leuven, Belgium
single-cell omics
updated 4 hours ago by 39k • written 3.4 years ago by • 0
0
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0
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654
views
News: Training in Programming for Biomedical Researchers @NIH, USA,March 2-5,2020
Researchers Biomedical Programming
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 130
0
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0
replies
541
views
News: 2nd Workshop on Single-Cell Sequencing
single-cell sequencing
updated 4 hours ago by 39k • written 3.4 years ago by • 0
0
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0
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1.1k
views
Job: Genomic Data Analysis - Bioinformatician
Data-Analysis Bioinformatician Biology
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 30
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0
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1.1k
views
Job: Postdoctoral Fellow - Bioinformatician with experience in biological data analysis
Bioinformatician Biology
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 30
0
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0
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457
views
News: precisionFDA & Georgetown ICBI Brain Cancer Predictive Modeling Challenge Extension and New Incentive
genome
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 150
0
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3
replies
1.9k
views
METAL (gwas meta-analysis tool)
meta-analysis gwas metal genomics
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 10
0
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0
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1.1k
views
Job: Computational postdoc in NGS data analysis at CIBIO, Trento (Italy)
next-gen-sequencing genome SNP
updated 4 hours ago by 39k • written 3.4 years ago by ▴ 10
0
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1
reply
53
views
sgRNA design
gene-editing
updated 3 hours ago by 39k • written 4 hours ago by • 0
0
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0
replies
909
views
Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
lipidomics R clinical-research metabolomics
updated 3 hours ago by 39k • written 3.3 years ago by • 0
0
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3
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114
views
Is PanCan data microarray or rna-seq
pancan rna rna-seq microarray data
updated 3 hours ago by 130k • written 13 hours ago by • 0
0
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1
reply
474
views
Msc in bioinformatics recommendation
career
updated 3 hours ago by 39k • written 3.3 years ago by ▴ 70
0
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0
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612
views
News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
Genomics RNA-Seq Biomedical next-gen
updated 3 hours ago by 39k • written 3.3 years ago by ▴ 130
0
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0
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262
views
fragments.tsv.gz file in ATAC seq
ATAC-seq
updated 3 hours ago by 39k • written 9 weeks ago by ▴ 100
0
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2
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422
views
Promoter regions and visualization on IGV
ATAC-seq IGV
updated 3 hours ago by 39k • written 4 months ago by ▴ 10
0
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0
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195
views
scATAC low fragments quality
scATAC-seq single-cell
updated 3 hours ago by 39k • written 16 months ago by ▴ 50
0
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0
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327
views
Recovering summit position from ENCODE narrowPeak (BED6+4) format
Summit IDR Peak-Calling ATAC-seq
updated 2 hours ago by 39k • written 16 months ago by ▴ 20
0
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0
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190
views
ATAC seq - Odd insert size distribution
atac atac-seq qc
updated 2 hours ago by 39k • written 14 months ago by ▴ 10
0
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2
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355
views
BedGraph to bigWig
bigWig BedGraph Galaxy ATAC-seq
updated 2 hours ago by 39k • written 5 months ago by ▴ 10
0
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0
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313
views
TSS enrichement plot : Are scores different between paired and single end ?
atac-seq encode chip-seq
updated 2 hours ago by 39k • written 19 months ago by ▴ 20
0
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3
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875
views
dba.count reduces binding matrix, why?
diffbind3 bioconductor diffbind atac-seq chip-seq
updated 2 hours ago by 39k • written 21 months ago by ▴ 30
0
votes
2
replies
946
views
How exactly does diffBind count reads?
atac-seq diffbind
updated 2 hours ago by 39k • written 2.2 years ago by ▴ 10
0
votes
1
reply
866
views
deeptools plotHeatmap gives blurry pixelated image
computeMatrix plotHeatmap deeptools ATAC-seq
updated 2 hours ago by 39k • written 2.4 years ago by • 0
0
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5
replies
955
views
bigwigs to reads in peaks
R atac-seq
updated 2 hours ago by 39k • written 2.4 years ago by ▴ 60
0
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6
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1.9k
views
Variable read length distribution after cutadapt running for my ATAC-seq datasets
cutadapt read-length alignment ATAC-seq
updated 2 hours ago by 39k • written 3.1 years ago by • 0
0
votes
2
replies
779
views
Using ATACseq to do motif analysis in the promoters of a gene set
bedtools RNA-Seq ATAC-seq
updated 2 hours ago by 39k • written 3.3 years ago by • 0
0
votes
1
reply
900
views
Strange output from Homer findPeaks
homer atac-seq
updated 2 hours ago by 39k • written 3.5 years ago by ▴ 200
0
votes
1
reply
934
views
ATAC seq enhancer help
alignment ATAC-seq bowtie2 DNA Enhancers
updated 2 hours ago by 39k • written 3.7 years ago by • 0
0
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0
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784
views
BWA MEM paramenter
alignment sequencing
updated 2 hours ago by 39k • written 3.3 years ago by • 0
0
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4
replies
825
views
News: Pan-Structural Variation hackathon in the Cloud!
SV sequencing
updated 2 hours ago by 39k • written 3.3 years ago by 9.6k
0
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0
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1.0k
views
Job: Postdoctoral Scientist in Computational Immunology
assembly
updated 2 hours ago by 39k • written 3.3 years ago by • 0
0
votes
0
replies
1.3k
views
Job: Research scientist in bioinformatics, Sweden
postdoc data-analysis cancer
updated 2 hours ago by 39k • written 3.3 years ago by ▴ 10
0
votes
0
replies
464
views
News: Georgetown ICBI and precisionFDA Brain Cancer Challenge Final Reminder
R
updated 2 hours ago by 39k • written 3.3 years ago by ▴ 150
0
votes
0
replies
1.0k
views
Job: Applications invited for Microbiome specialist
microbiome
updated 2 hours ago by 39k • written 3.3 years ago by • 0
0
votes
0
replies
890
views
Job: Target Discovery Genetics Project Leader at C4X Discovery - London Office
mathematics statistics R SNP next-gen
updated 2 hours ago by 39k • written 3.3 years ago by • 0
0
votes
0
replies
571
views
News: Training in Advanced Transcriptomics (RNA-Seq) Analysis
Transcriptome-analysis RNA-Seq Biomedical next-gen
updated 2 hours ago by 39k • written 3.3 years ago by ▴ 130
0
votes
0
replies
576
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
RNA-Seq Biomedical next-gen
updated 2 hours ago by 39k • written 3.3 years ago by ▴ 130
227 results • Page 4 of 5
Recent Votes
Answer: Saving results from yeastgenome.org blastp search
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data.
Answer: Saving results from yeastgenome.org blastp search
Comment: snps from empty well, Illumina Sequencing
Extract sequences from a fastq file by a list of IDs
Answer: Extract sequences from a fastq file by a list of IDs
Answer: Differences in GTF files hg19 and hg38
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Recent Awards • All
Popular Question to Payal ▴ 140
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Recent Replies
Comment: VCF file CSQ flag by Payal ▴ 140
Its a gvcf file #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT S101 S102 S103 S104 S105
Comment: CellRanger problem by GenoMax 130k
And how much memory do you have assigned for this job? Likely you do not have enough memory for this process.
Comment: VCF file CSQ flag by Ram 39k
> a g.VCF file A `.vcf` file or a `gvcf` file?
Comment: CellRanger problem by Ram 39k
What is the cellranger command you're using?
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data. by Yeeshouw • 0
I see, I believe I was running an older version or have missed the option, I have updated to v2.10.5 and can see this option now. Thank you…
Answer: Saving results from yeastgenome.org blastp search by GenoMax 130k
Looks like yeastgenome site does not provide a way to export or save the results in any other format. You could do the search over at NCBI …
Answer: Differences in GTF files hg19 and hg38 by GenoMax 130k
Not sure where you got your GTF for GRCh38 from but [**one from GENCODE**][1] has the level info you are looking for. chr1 HAVANA…
Comment: CHiP-Seq Questions by B.N. • 0
Thank you for the suggestions Dr. Stark.
Comment: Diff Bind Questions by B.N. • 0
Thank you so much for the insight Dr. Stark!
Comment: Is PanCan data microarray or rna-seq by GenoMax 130k
This particular example ("GeneChip") is an array. Early TCGA samples may have been done using arrays and later sequenced. Appears to be thi…
Comment: ChatGPT optimized for bioinformatics questions by Sasha ▴ 280
Hoping to add functionality around this. Stay tuned. Big problem for our space that needs to be resolved.
Comment: Is PanCan data microarray or rna-seq by solarchan7 • 0
Hi, so this [paper](https://www.nature.com/articles/s41598-019-45165-4) uses the TCGA dataset and in the supplementary information, it ment…
Comment: counts matrix should be numeric, currently it has mode: character when using a c by Darked89 4.4k
Since the input file is named `normalized.csv` and the values look like floats most likely the counts have been already normalized somehow.
Comment: Embryo transcriptome by Basti ★ 1.6k
https://www.ebi.ac.uk/ena/browser/view/PRJEB11202 https://www.ebi.ac.uk/ena/browser/view/PRJNA153427
Comment: ChatGPT optimized for bioinformatics questions by ATpoint 72k
How is it trained on PubMed/papers? One major drawback of ChatGPT is that it wildly makes up papers that do not even exist but with great c…
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