updated 13 hours ago by
Kevin Blighe
85k
•
written 5.5 years ago by
Mike
★
1.8k
129
votes
22
replies
52k
views
15 follow
7
votes
6
replies
1.1k
views
updated 23 hours ago by
Joseph
•
0
•
written 8 months ago by
Devon Ryan
103k
5
votes
5
replies
195
views
3
votes
4
replies
270
views
3
votes
2
replies
217
views
updated 6 hours ago by
Pierre Lindenbaum
154k
•
written 2 days ago by
guntul
•
0
3
votes
6
replies
2.0k
views
3
votes
3
replies
314
views
Forum:
[Meta] Use of AI
updated 23 hours ago by
GenoMax
129k
•
written 1 day ago by
Vincent Laufer
★
2.9k
3
votes
10
replies
1.6k
views
6 follow
updated 3 hours ago by
biofalconch
▴
580
•
written 10 months ago by
MYousry
▴
20
2
votes
2
replies
114
views
updated 8 hours ago by
shenwei356
8.1k
•
written 9 hours ago by
Sapphire
•
0
2
votes
2
replies
121
views
13 hours ago by
Dan
▴
120
2
votes
3
replies
129
views
1
vote
3
replies
272
views
1
vote
1
reply
73
views
1
vote
3
replies
326
views
3 hours ago by
kirillkirilenko
▴
10
1
vote
1
reply
118
views
1
vote
2
replies
162
views
updated 1 hour ago by
GenoMax
129k
•
written 21 hours ago by
kwhiggins27
▴
10
1
vote
2
replies
197
views
0
votes
1
reply
120
views
updated 8 hours ago by
Mensur Dlakic
★
23k
•
written 15 hours ago by
neto.pvp
•
0
0
votes
0
replies
84
views
0
votes
2
replies
135
views
updated 7 hours ago by
LChart
2.6k
•
written 16 hours ago by
Jennifer M
•
0
0
votes
0
replies
108
views
updated 7 hours ago by
zhang yi xing
▴
10
•
written 4 days ago by
oksana03fel
•
0
0
votes
5
replies
356
views
updated 6 hours ago by
Basti
★
1.5k
•
written 3 days ago by
atemedorri137798
•
0
0
votes
3
replies
289
views
0
votes
1
reply
144
views
updated 21 hours ago by
Hamid Ghaedi
2.9k
•
written 1 day ago by
younglin113
▴
50
0
votes
0
replies
29
views
3 hours ago by
english.server
▴
290
0
votes
5
replies
315
views
0
votes
4
replies
121
views
0
votes
0
replies
27
views
2 hours ago by
nicolo.gualandi
•
0
0
votes
6
replies
325
views
0
votes
2
replies
69
views
0
votes
0
replies
68
views
1 hour ago by
Fungi-Beware!
▴
10
0
votes
1
reply
9
views
updated 10 minutes ago by
GenoMax
129k
•
written 21 minutes ago by
subashini.fbtpb106
•
0
0
votes
1
reply
203
views
0
votes
1
reply
122
views
updated 16 hours ago by
WouterDeCoster
47k
•
written 17 hours ago by
Fatemeh
•
0
0
votes
0
replies
77
views
0
votes
7
replies
550
views
0
votes
2
replies
208
views
updated 14 hours ago by
benformatics
3.6k
•
written 1 day ago by
sam7459
•
0
0
votes
3
replies
146
views
0
votes
1
reply
21
views
Recent Locations •
All
London, just now
Spain, just now
India, just now
McGill University, 1 minute ago
Austria, 1 minute ago
United States, 1 minute ago
United States, 3 minutes ago
Recent Awards •
All
Teacher to
antonioggsousa
2.8k
Teacher to
Kevin Blighe
85k
Popular Question to
bioinfo_ga
▴
50
Popular Question to
english.server
▴
290
Teacher to
Pierre Lindenbaum
154k
Voter to
pilargmarch
▴
100
Popular Question to
anna
▴
10
Recent Replies
Answer: Installation of PPFinder
by
GenoMax
129k
Since the software is still [**listed on the Brent lab**][1] website your best bet would be to email the investigator and ask that they fix…
Comment: How to calculate TPM from featureCounts output
by
rpolicastro
12k
If you want to go that route, yes.
Comment: Difference between USCS exon coordinates and ensembl
by
ATpoint
72k
What did you download from UCSC? 1-off usually means one file is zero-based and the other 1-based. BED files from UCSC are 0-based, Ensembl…
Comment: Alignment of case vs. control from different origin
by
sativus
•
0
Thank you kindly for the explanation, it is highly appreciated. I suppose i was a bit confused as you quite often see people validating the…
Answer: Gene enrichment analysis
by
nux
▴
10
Hello. For this you have to select 'hyper' as your method and then provide a complete list of genes which both include the candidate and no…
Comment: CNNScoreVariants Error
by
bestone
▴
10
Thank you for replying I updated it worked but it gives another Error A USER ERROR has occurred: Invalid argument ' -V'.
Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
by
jrodrigu
•
0
Thank you so much. I made the suggested changes. However, I still have the same problem. Please check the new log file.
https://github.c…
Comment: Getting same value for start and end position, "DNA methylation"
by
ATpoint
72k
That's a comment, not an answer, please use `ADD COMMENT`.
Comment: Getting same value for start and end position, "DNA methylation"
by
bioinfo_ga
▴
50
Are you working on bisulphite kind of data or chipseq ????
Answer: How to calculate TPM from featureCounts output
by
bioinfo_ga
▴
50
hi ,
You can use a python package rnanorm [https://pypi.org/project/rnanorm/]. The input required are your read count values from feature …
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
by
biofalconch
▴
580
Hey, if you arelady have the barcodes, you could use samtools
`samtools view -h -b -f CB:Z:TAAGAGATCCTATGTT > TAAGAGATCCTATGTT.bam`
Hope…
Answer: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
by
biofalconch
▴
580
Here is a code that should work, but just like everyone else in the comments I'm a little confused why would you need to separate them:
…
Comment: CNNScoreVariants Error
by
Pierre Lindenbaum
154k
check you have a complete environment for GATK , including the python module "keras". https://gatk.broadinstitute.org/hc/en-us/articles/360…
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
by
Cathal
•
0
Did you have any luck in splitting the BAM file based on the 10x cell barcode? I would like to split a BAM file based to only include 5 spe…
Traffic: 2697 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6