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1,000 results • Page
1 of 20
Sort: Rank
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0
votes
0
replies
9
views
Trajectory analysis using Monocle3 with Seurat sub-clustering
scRNA-seq
Trajectory
Seurat
analysis
Monocle3
20 minutes ago by
joonhong kwon
▴ 40
0
votes
0
replies
26
views
News:
The Canadian Bioinformatics Workshops are back for summer 2023
CBW
training
workshop
2 hours ago by
bioinformatics.ca
• 0
0
votes
0
replies
23
views
Error parsing strand (?) from GFF line
assembly
2 hours ago by
hafiz.talhamalik
▴ 350
0
votes
1
reply
30
views
Most efficient way to run Diamond against a very very large database (i.e., NCBI's NR)?
protein
annotation
alignment
diamond
nr
updated 1 hour ago by
Mensur Dlakic
★ 23k • written 2 hours ago by
O.rka
▴ 650
0
votes
0
replies
24
views
Variant caller reports a homozygous variant genotype, but more reads are associated with reference
bcftools
variants
46 minutes ago by
rebeliscu
▴ 50
0
votes
3
replies
101
views
Sample size for population genetics
Population-genetics
sample-size
updated 2 hours ago by
Jeremy Leipzig
21k • written 7 hours ago by
zimmer.schweiz
• 0
730
votes
161
replies
108k
views
100 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 13 days ago by
Biostar
1.6k • written 6.3 years ago by
Istvan Albert
97k
1
vote
0
replies
55
views
List of Ongoing and Planned Long Read Sequencing studies?
long-read-sequencing
third-generation
updated 7 hours ago by
Ram
38k • written 7 hours ago by
Vincent Laufer
★ 2.5k
3
votes
8
replies
3.7k
views
counting the unmapped reads
RNA-Seq
updated 8 hours ago by
chemkhi.ali13
• 0 • written 7.9 years ago by
fi1d18
★ 4.1k
0
votes
1
reply
86
views
SNP ID (rsID) to Chr no. and Position
Annotation
7 hours ago by
Jewahir
• 0
0
votes
0
replies
68
views
how to plot distribution of SNPs across a set of genes based on distance between snp and gene
snp
genes
updated 7 hours ago by
Ram
38k • written 8 hours ago by
rheab1230
▴ 140
0
votes
0
replies
58
views
Reactome Species Comparison - analysis table
reactome
8 hours ago by
a11msp
▴ 120
0
votes
1
reply
137
views
Discordinant aligment
Paired-end
HISAT2
updated 8 hours ago by
Istvan Albert
97k • written 15 hours ago by
ali
• 0
0
votes
1
reply
101
views
Using multimaping reads or unique reads on featurecounts?
featurecounts
HISAT2
updated 9 hours ago by
GenoMax
127k • written 10 hours ago by
omargmc.tak
• 0
0
votes
0
replies
62
views
News:
Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS
DNA-Seq
calling
RNA-Seq
workshop
variant
10 hours ago by
David Langenberger
9.9k
0
votes
1
reply
217
views
module and trait correlation for WGCNA
treatment
WGCNA
relation
microarray
module-treatment
updated 10 hours ago by
andres.firrincieli
3.1k • written 1 day ago by
Shriyansh
• 0
3
votes
7
replies
180
views
1000 genomes hg38 with dbSNP rsid
1000genomes
dbsnp
updated 8 hours ago by
Ram
38k • written 11 hours ago by
Vince
▴ 150
0
votes
0
replies
57
views
How to import impute2.dosage files to analyse it in R (GWAS)
regression
GWAS
impute2
dosage
10 hours ago by
Sebastian
• 0
5
votes
3
replies
374
views
What's the correct way to map to hg38 with alternative contigs?
NGS
bwa
16 hours ago by
Belanov
▴ 10
4
votes
4
replies
130
views
Download NCBI compiled protein database for specific genus
protein
NCBI
updated 10 hours ago by
GenoMax
127k • written 12 hours ago by
saadleeshehreen
▴ 110
0
votes
0
replies
63
views
Michigan Imputation server failed job
michigan-imputation-server
vcf
updated 12 hours ago by
Ram
38k • written 12 hours ago by
Najla
• 0
0
votes
0
replies
64
views
MD simulation error
MD
schrodinger
updated 12 hours ago by
Ram
38k • written 12 hours ago by
mixmatchey
• 0
0
votes
0
replies
70
views
File has zero value indivuals
Haploview
updated 12 hours ago by
Ram
38k • written 13 hours ago by
Nai
▴ 50
0
votes
3
replies
175
views
Kallisto bustools for scRNA-seq
Kallisto
updated 9 hours ago by
dsull
★ 4.0k • written 14 hours ago by
t.ru
• 0
0
votes
0
replies
88
views
KEGGList Error in R
KEGGList
14 hours ago by
GiV17
▴ 50
0
votes
1
reply
186
views
How to analyze RepeatProteinMask results
RepeatProteinMask
14 hours ago by
zijian
• 0
0
votes
1
reply
257
views
how to look at interaction between SNP and gene
SNP
Gene
Hi-C
updated 11 hours ago by
Ram
38k • written 4 days ago by
rheab1230
▴ 140
1
vote
2
replies
310
views
Remove part of headers in FASTA file
Fasta
updated 15 hours ago by
Mark
★ 1.2k • written 2 days ago by
fatemeh
• 0
0
votes
2
replies
178
views
How to get a list of genes information for a pathway?
pathway
updated 16 hours ago by
ATpoint
70k • written 19 hours ago by
WUSCHEL
▴ 720
0
votes
0
replies
90
views
GATK VariantAnnotator -A PossibleDeNovo
VariantAnnotator
GATK
17 hours ago by
zihanss
• 0
0
votes
0
replies
92
views
Tool:
BioLabImage - Mac program for DNA/RNA/protein gel/blot, cells/colonies image analysis
image-analysis
gel
blot
cells
colonies
updated 11 hours ago by
Ram
38k • written 18 hours ago by
vytarasov
▴ 180
0
votes
1
reply
267
views
getTable ignores query ranges
rtracklayer
18 hours ago by
Kyle
▴ 10
0
votes
2
replies
185
views
Installing rlang version 1.1.0
ExomeDepth
rlang
R
1 hour ago by
Medha
• 0
2
votes
1
reply
133
views
Somatic truth set
benchmarking
Somatic
21 hours ago by
samuel
▴ 200
3
votes
5
replies
403
views
GetBM - GERP conservation score for GRCm39
ensembl
biomaRt
updated 15 hours ago by
GenoMax
127k • written 3 days ago by
Kyle
▴ 10
0
votes
0
replies
137
views
Job:
Bioinformatician - Cancer Research (Melbourne, Australia)
single-cell
RNAseq
22 hours ago by
ahnje770
▴ 20
0
votes
4
replies
711
views
MapSplice2 gives error if the thread count (-p value) is greater than 2
Mapsplice2
fusion_candidates
updated 15 hours ago by
GenoMax
127k • written 20 months ago by
nkmalini97
• 0
0
votes
1
reply
150
views
Confused on strandedness, what are antisense transcripts?
rnaseq
strandedness
updated 20 hours ago by
dsull
★ 4.0k • written 1 day ago by
coboyfan12
• 0
4
votes
4
replies
216
views
Hard clip fastq
fastq
updated 1 day ago by
GenoMax
127k • written 1 day ago by
samuel
▴ 200
0
votes
1
reply
139
views
using GRanges metadata to constrain overlap searches between objects
plyranges
Bioconductor
GRanges
R
GenomicRanges
updated 5 hours ago by
seidel
11k • written 1 day ago by
Charles Murtaugh
▴ 40
0
votes
0
replies
104
views
TrN (df = k+5) and TrNe (df = k+2) - which of these Tamura-Nei model variants is used in MEGAx?
Tamura-Nei
phylogeny
phangorn
modelTest
mega
1 day ago by
poecile.pal
▴ 50
0
votes
1
reply
242
views
Adding median value to VlnPlot in Seurat
Median
Seurat
updated 22 hours ago by
seidel
11k • written 2 days ago by
Swati
• 0
0
votes
3
replies
307
views
how to know what adapter sequences to trim for RNA-seq?
fastq
RNA-seq
cutadapt
1 day ago by
lunarskye222
• 0
0
votes
1
reply
168
views
Variant Calling with Multiple Individuals in Freebayes
freebayes
variant-calling
updated 10 hours ago by
Ram
38k • written 1 day ago by
Laurence
• 0
1
vote
4
replies
321
views
Log2 FC Threshold
GEO2R
updated 11 hours ago by
Mensur Dlakic
★ 23k • written 2 days ago by
leenkhoury282
• 0
0
votes
0
replies
164
views
How to sort graph based on fold change and instead of activated and suppressed, how to add up and downregulated in graph header?
clusterprofiler
1 day ago by
sharmatina189059
▴ 110
1
vote
4
replies
236
views
Protein name in GenBank
genbank
python
biopython
updated 1 day ago by
GenoMax
127k • written 1 day ago by
Daniel
• 0
0
votes
1
reply
171
views
doing PBS(population branch statistics) in ANGSD
fst
pbs
ANGSD
1 day ago by
Blessing
• 0
2
votes
2
replies
222
views
Cellranger count with error information "... which wasn't expected, or isn't valid in this context"
count
cellranger
scRNAseq
1 day ago by
diqixiaoyaoer
▴ 10
0
votes
1
reply
161
views
Tell me about making a transcriptome model of a specific tissue.
model
transcriptome
updated 1 day ago by
ATpoint
70k • written 1 day ago by
Soliloquy
▴ 10
1,000 results • Page
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smoothing or binning bigWig file
List of Ongoing and Planned Long Read Sequencing studies?
Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Answer: Read lengths greater than insert length
A: Changing Output From Gene ID to Symbol When Running findMarkers from Scran
Answer: BLAST Database error: No alias or index file found for nucleotide database
Answer: How to get gene from PSIBLAST resuts
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Comment: split fasta file to train deep learning model
by
pinheirofabiano
▴ 10
@shenwei356, thank you very much for your help, perfect! But now I realized that some fasta sequences contain the letter "B", which is ou…
Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI
by
Mensur Dlakic
★ 23k
I think it depends on the speed of your local disks and the memory amount. On a single node, breaking up the database doesn't sound like a …
Comment: Sample size for population genetics
by
Jeremy Leipzig
21k
Other populations just make the model harder to generalize, not easier.
Comment: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
by
Vincent Laufer
★ 2.5k
i think there is some of that - my most upvoted comment of all time was a dismissive comment i made while extremely tired. for context i ha…
Comment: Molecular biologist / clinical pharmacologist (f/m/d)
by
Jeremy
▴ 770
Is this job on site in Vienna or remote?
Comment: smoothing or binning bigWig file
by
rls_08
▴ 40
if you use bigwigCompare , that would not create a sliding window, but instead, it will output the mean for each bin, according to the -bin…
Comment: Sample size for population genetics
by
zimmer.schweiz
• 0
Thank you so much for your answer. For common polygenic diseases, would it make sense to increase the number of populations sampled, in ord…
Answer: Sample size for population genetics
by
Jeremy Leipzig
21k
For a rare penetrant monogenic disease? A few cases. For a common polygenic disease or trait? 500k-10M
Answer: using GRanges metadata to constrain overlap searches between objects
by
seidel
11k
Rather than do all overlaps all the time for all samples, why not restrict the data by sample when you can. The code below works about 4 ti…
Comment: How to get gene from PSIBLAST resuts
by
Tom
• 0
Hello, thank you for your answer, I have a question, Why the information from the GFF file and from the feature table is different? I see …
Comment: SNP ID (rsID) to Chr no. and Position
by
Jewahir
• 0
Yeah, thank you for that!!
Comment: 1000 genomes hg38 with dbSNP rsid
by
Ram
38k
It should be pretty straightforward. Just to save you some pain, run these on the 1000g VCF once you download it: 1. `vt decompose -s` to …
Comment: 1000 genomes hg38 with dbSNP rsid
by
Vince
▴ 150
Yeah, I had some hope that I wouldn't need to mess with doing this ...
Answer: counting the unmapped reads
by
chemkhi.ali13
• 0
> Hi all, > > I have a sam file, my supervisor asked me to count the number of > unmapped reads, which command I should use? > > sam…
Comment: 1000 genomes hg38 with dbSNP rsid
by
Ram
38k
In that case, you'll need to get the VCF from 1000g - that's probably going to be the only place where individual level data is available, …
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